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New Insights on the Sister Lineage of Percomorph Fishes with an Anchored Hybrid Enrichment Dataset
Molecular Phylogenetics and Evolution 110 (2017) 27–38 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev New insights on the sister lineage of percomorph fishes with an anchored hybrid enrichment dataset ⇑ Alex Dornburg a, , Jeffrey P. Townsend b,c,d, Willa Brooks a, Elizabeth Spriggs b, Ron I. Eytan e, Jon A. Moore f,g, Peter C. Wainwright h, Alan Lemmon i, Emily Moriarty Lemmon j, Thomas J. Near b,k a North Carolina Museum of Natural Sciences, Raleigh, NC, USA b Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA c Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA d Department of Biostatistics, Yale University, New Haven, CT 06510, USA e Marine Biology Department, Texas A&M University at Galveston, Galveston, TX 77554, USA f Florida Atlantic University, Wilkes Honors College, Jupiter, FL 33458, USA g Florida Atlantic University, Harbor Branch Oceanographic Institution, Fort Pierce, FL 34946, USA h Department of Evolution & Ecology, University of California, Davis, CA 95616, USA i Department of Scientific Computing, Florida State University, 400 Dirac Science Library, Tallahassee, FL 32306, USA j Department of Biological Science, Florida State University, 319 Stadium Drive, Tallahassee, FL 32306, USA k Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA article info abstract Article history: Percomorph fishes represent over 17,100 species, including several model organisms and species of eco- Received 12 April 2016 nomic importance. Despite continuous advances in the resolution of the percomorph Tree of Life, resolu- Revised 22 February 2017 tion of the sister lineage to Percomorpha remains inconsistent but restricted to a small number of Accepted 25 February 2017 candidate lineages. -
CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
Acanthopterygii, Bone, Eurypterygii, Osteology, Percomprpha
Research in Zoology 2014, 4(2): 29-42 DOI: 10.5923/j.zoology.20140402.01 Comparative Osteology of the Jaws in Representatives of the Eurypterygian Fishes Yazdan Keivany Department of Natural Resources (Fisheries Division), Isfahan University of Technology, Isfahan, 84156-83111, Iran Abstract The osteology of the jaws in representatives of 49 genera in 40 families of eurypterygian fishes, including: Aulopiformes, Myctophiformes, Lampridiformes, Polymixiiformes, Percopsiformes, Mugiliformes, Atheriniformes, Beloniformes, Cyprinodontiformes, Stephanoberyciformes, Beryciformes, Zeiformes, Gasterosteiformes, Synbranchiformes, Scorpaeniformes (including Dactylopteridae), and Perciformes (including Elassomatidae) were studied. Generally, in this group, the upper jaw consists of the premaxilla, maxilla, and supramaxilla. The lower jaw consists of the dentary, anguloarticular, retroarticular, and sesamoid articular. In higher taxa, the premaxilla bears ascending, articular, and postmaxillary processes. The maxilla usually bears a ventral and a dorsal articular process. The supramaxilla is present only in some taxa. The dentary is usually toothed and bears coronoid and posteroventral processes. The retroarticular is small and located at the posteroventral corner of the anguloarticular. Keywords Acanthopterygii, Bone, Eurypterygii, Osteology, Percomprpha following method for clearing and staining bone and 1. Introduction cartilage provided in reference [18]. A camera lucida attached to a Wild M5 dissecting stereomicroscope was used Despite the introduction of modern techniques such as to prepare the drawings. The bones in the first figure of each DNA sequencing and barcoding, osteology, due to its anatomical section are arbitrarily shaded and labeled and in reliability, still plays an important role in the systematic the others are shaded in a consistent manner (dark, medium, study of fishes and comprises a major percent of today’s and clear) to facilitate comparison among the taxa. -
Early Stages of Fishes in the Western North Atlantic Ocean Volume
ISBN 0-9689167-4-x Early Stages of Fishes in the Western North Atlantic Ocean (Davis Strait, Southern Greenland and Flemish Cap to Cape Hatteras) Volume One Acipenseriformes through Syngnathiformes Michael P. Fahay ii Early Stages of Fishes in the Western North Atlantic Ocean iii Dedication This monograph is dedicated to those highly skilled larval fish illustrators whose talents and efforts have greatly facilitated the study of fish ontogeny. The works of many of those fine illustrators grace these pages. iv Early Stages of Fishes in the Western North Atlantic Ocean v Preface The contents of this monograph are a revision and update of an earlier atlas describing the eggs and larvae of western Atlantic marine fishes occurring between the Scotian Shelf and Cape Hatteras, North Carolina (Fahay, 1983). The three-fold increase in the total num- ber of species covered in the current compilation is the result of both a larger study area and a recent increase in published ontogenetic studies of fishes by many authors and students of the morphology of early stages of marine fishes. It is a tribute to the efforts of those authors that the ontogeny of greater than 70% of species known from the western North Atlantic Ocean is now well described. Michael Fahay 241 Sabino Road West Bath, Maine 04530 U.S.A. vi Acknowledgements I greatly appreciate the help provided by a number of very knowledgeable friends and colleagues dur- ing the preparation of this monograph. Jon Hare undertook a painstakingly critical review of the entire monograph, corrected omissions, inconsistencies, and errors of fact, and made suggestions which markedly improved its organization and presentation. -
Larvae and Juveniles of the Deepsea “Whalefishes”
© Copyright Australian Museum, 2001 Records of the Australian Museum (2001) Vol. 53: 407–425. ISSN 0067-1975 Larvae and Juveniles of the Deepsea “Whalefishes” Barbourisia and Rondeletia (Stephanoberyciformes: Barbourisiidae, Rondeletiidae), with Comments on Family Relationships JOHN R. PAXTON,1 G. DAVID JOHNSON2 AND THOMAS TRNSKI1 1 Fish Section, Australian Museum, 6 College Street, Sydney NSW 2010, Australia [email protected] [email protected] 2 Fish Division, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. [email protected] ABSTRACT. Larvae of the deepsea “whalefishes” Barbourisia rufa (11: 3.7–14.1 mm nl/sl) and Rondeletia spp. (9: 3.5–9.7 mm sl) occur at least in the upper 200 m of the open ocean, with some specimens taken in the upper 20 m. Larvae of both families are highly precocious, with identifiable features in each by 3.7 mm. Larval Barbourisia have an elongate fourth pelvic ray with dark pigment basally, notochord flexion occurs between 6.5 and 7.5 mm sl, and by 7.5 mm sl the body is covered with small, non- imbricate scales with a central spine typical of the adult. In Rondeletia notochord flexion occurs at about 3.5 mm sl and the elongate pelvic rays 2–4 are the most strongly pigmented part of the larvae. Cycloid scales (here reported in the family for the first time) are developing by 7 mm; these scales later migrate to form a layer directly over the muscles underneath the dermis. By 7 mm sl there is a unique organ, here termed Tominaga’s organ, separate from and below the nasal rosette, developing anterior to the eye. -
Order BERYCIFORMES ANOPLOGASTRIDAE Anoplogaster
click for previous page 2210 Bony Fishes Order BERYCIFORMES ANOPLOGASTRIDAE Fangtooths by J.R. Paxton iagnostic characters: Small (to 16 cm) Dberyciform fishes, body short, deep, and compressed. Head large, steep; deep mu- cous cavities on top of head separated by serrated crests; very large temporal and pre- opercular spines and smaller orbital (frontal) spine in juveniles of one species, all disap- pearing with age. Eyes smaller than snout length in adults (but larger than snout length in juveniles). Mouth very large, jaws extending far behind eye in adults; one supramaxilla. Teeth as large fangs in pre- maxilla and dentary; vomer and palatine toothless. Gill rakers as gill teeth in adults (elongate, lath-like in juveniles). No fin spines; dorsal fin long based, roughly in middle of body, with 16 to 20 rays; anal fin short-based, far posterior, with 7 to 9 rays; pelvic fin abdominal in juveniles, becoming subthoracic with age, with 7 rays; pectoral fin with 13 to 16 rays. Scales small, non-overlap- ping, spinose, cup-shaped in adults; lateral line an open groove partly covered by scales. No light organs. Total vertebrae 25 to 28. Colour: brown-black in adults. Habitat, biology, and fisheries: Meso- and bathypelagic. Distinctive caulolepis juvenile stage, with greatly enlarged head spines in one species. Feeding mode as carnivores on crustaceans as juveniles and on fishes as adults. Rare deepsea fishes of no commercial importance. Remarks: One genus with 2 species throughout the world ocean in tropical and temperate latitudes. The family was revised by Kotlyar (1986). Similar families occurring in the area Diretmidae: No fangs, jaw teeth small, in bands; anal fin with 18 to 24 rays. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Deep-Sea Mystery Solved: Astonishing Larval Transformations and Extreme
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central Biol. Lett. (2009) 5, 235–239 1. INTRODUCTION doi:10.1098/rsbl.2008.0722 New specimens from collecting expeditions continue Published online 20 January 2009 to provide insights into the many mysteries of the Evolutionary biology Earth’s largest ecological habitat, the midwaters of the deep sea between the sunlit surface waters and the bottom. The Cetomimidae (whalefishes), one Deep-sea mystery solved: of the most speciose bathypelagic fish families (nine genera, 20 species), were described by Goode & Bean astonishing larval (1895). There are no larvae among the 600C whale- fish specimens (26–408 mm standard length (SL)), transformations and collected below 1000 m; all sexually mature individ- uals are females (Paxton 1989). Adults have whale- extreme sexual shaped bodies, tiny eyes, huge horizontal mouths, dimorphism unite three cavernous lateral-line canals, and lack pelvic fins and external scales (figure 1f ). The Mirapinnidae (hairy- fish families fish and tapetails) were described as a new order by Bertelsen & Marshall (1956) and comprise five G. David Johnson1,*, John R. Paxton2, species in three genera; they lack scales and lateral Tracey T. Sutton3, Takashi P. Satoh4, lines, have large mouths with almost vertically Tetsuya Sado5, Mutsumi Nishida4 oriented jaws and pelvic fins (figure 1a–d ). The and Masaki Miya5 hairyfish, known from a single specimen, is uniquely 1Division of Fishes, National Museum of Natural History, characterized by a dense covering of hair-like out- Smithsonian Institution, Washington, DC 20560, USA growths over the head, body and fins. -
Distributionoffi00grey.Pdf
r a I B R.AR.Y OF THE UNIVERSITY Of ILLINOIS cr> 52)0.5 CO FI 3 v.3G BIOLOGY The person charging this material is re- sponsible for its return on or before the Latest Date stamped below. Theft, and mutilation, underlining of books are reasons for disciplinary action and may result ,n dismissal from the University University of Illinois Library M^a^m UM*^V L161 O-1096 36 .2 THE DISTRIBUTION OF FISHES FOUND BELOW A DEPTH OF 2000 METERS MARION GREY FIELDIANA: ZOOLOGY VOLUME 36, NUMBER 2 Published by CHICAGO NATURAL HISTORY MUSEUM JULY 30, 1956 NAT. HIST. r THE DISTRIBUTION OF FISHES FOUND BELOW A DEPTH OF 2000 METERS MARION GREY Associate, Division of Fishes THE LIBRARY OF THE AUG H 1966 FIELDIANA: ZOOLOGY UHWB8I1Y OF ILLINOIS VOLUME 36, NUMBER 2 Published by CHICAGO NATURAL HISTORY MUSEUM JULY 30, 1956 PRINTED IN THE UNITED STATES OF AMERICA BY CHICAGO NATURAL HISTORY MUSEUM PRESS WD X^ CONTENTS PAGE Introduction 77 Terminology 78 Fishes found below 3660 meters 78 Distinctive character of deep-abyssal fauna 82 Endemism in deep-abyssal waters 83 Endemism of species 84 The bathypelagic fishes 88 Conclusion 92 Note 93 Editorial note 93 Acknowledgments 93 Synonymies and Distribution 94 Scylliorhinidae 94 Squalidae 95 Rajidae 98 Chimaeridae 100 Rhinochimaeridae 101 Alepocephalidae 102 Searsiidae 116 Gonostomatidae 119 Bathylaconidae 127 Harpadontidae 128 Chlorophthalmidae 129 Bathypteroidae 130 Ipnopidae 135 Eurypharyngidae 137 Simenchelyidae 139 Nettastomidae 140 Congridae 142 Ilyophidae 142 Synaphobranchidae 143 Serrivomeridae 148 Nemichthyidae 149 Cyemidae 151 75 76 CONTENTS PAGE Halosauridae 152 Notacanthidae 156 Moridae 158 Gadidae 161 Macrouridae 162 Stephanoberycidae 190 Melamphaidae 191 Acropomatidae(?) 192 Parapercidae 193 Chiasmodontidae 193 Bathydraconidae 194 Zoarcidae C . -
Highly Diversified Late Cretaceous Fish Assemblage Revealed by Otoliths (Ripley Formation and Owl Creek Formation, Northeast Mississippi, Usa)
Rivista Italiana di Paleontologia e Stratigrafia (Research in Paleontology and Stratigraphy) vol. 126(1): 111-155. March 2020 HIGHLY DIVERSIFIED LATE CRETACEOUS FISH ASSEMBLAGE REVEALED BY OTOLITHS (RIPLEY FORMATION AND OWL CREEK FORMATION, NORTHEAST MISSISSIPPI, USA) GARY L. STRINGER1, WERNER SCHWARZHANS*2 , GEORGE PHILLIPS3 & ROGER LAMBERT4 1Museum of Natural History, University of Louisiana at Monroe, Monroe, Louisiana 71209, USA. E-mail: [email protected] 2Natural History Museum of Denmark, Zoological Museum, Universitetsparken 15, DK-2100, Copenhagen, Denmark. E-mail: [email protected] 3Mississippi Museum of Natural Science, 2148 Riverside Drive, Jackson, Mississippi 39202, USA. E-mail: [email protected] 4North Mississippi Gem and Mineral Society, 1817 CR 700, Corinth, Mississippi, 38834, USA. E-mail: [email protected] *Corresponding author To cite this article: Stringer G.L., Schwarzhans W., Phillips G. & Lambert R. (2020) - Highly diversified Late Cretaceous fish assemblage revealed by otoliths (Ripley Formation and Owl Creek Formation, Northeast Mississippi, USA). Riv. It. Paleontol. Strat., 126(1): 111-155. Keywords: Beryciformes; Holocentriformes; Aulopiformes; otolith; evolutionary implications; paleoecology. Abstract. Bulk sampling and extensive, systematic surface collecting of the Coon Creek Member of the Ripley Formation (early Maastrichtian) at the Blue Springs locality and primarily bulk sampling of the Owl Creek Formation (late Maastrichtian) at the Owl Creek type locality, both in northeast Mississippi, USA, have produced the largest and most highly diversified actinopterygian otolith (ear stone) assemblage described from the Mesozoic of North America. The 3,802 otoliths represent 30 taxa of bony fishes representing at least 22 families. In addition, there were two different morphological types of lapilli, which were not identifiable to species level. -
Appendices Appendices
APPENDICES APPENDICES APPENDIX 1 – PUBLICATIONS SCIENTIFIC PAPERS Aidoo EN, Ute Mueller U, Hyndes GA, and Ryan Braccini M. 2015. Is a global quantitative KL. 2016. The effects of measurement uncertainty assessment of shark populations warranted? on spatial characterisation of recreational fishing Fisheries, 40: 492–501. catch rates. Fisheries Research 181: 1–13. Braccini M. 2016. Experts have different Andrews KR, Williams AJ, Fernandez-Silva I, perceptions of the management and conservation Newman SJ, Copus JM, Wakefield CB, Randall JE, status of sharks. Annals of Marine Biology and and Bowen BW. 2016. Phylogeny of deepwater Research 3: 1012. snappers (Genus Etelis) reveals a cryptic species pair in the Indo-Pacific and Pleistocene invasion of Braccini M, Aires-da-Silva A, and Taylor I. 2016. the Atlantic. Molecular Phylogenetics and Incorporating movement in the modelling of shark Evolution 100: 361-371. and ray population dynamics: approaches and management implications. Reviews in Fish Biology Bellchambers LM, Gaughan D, Wise B, Jackson G, and Fisheries 26: 13–24. and Fletcher WJ. 2016. Adopting Marine Stewardship Council certification of Western Caputi N, de Lestang S, Reid C, Hesp A, and How J. Australian fisheries at a jurisdictional level: the 2015. Maximum economic yield of the western benefits and challenges. Fisheries Research 183: rock lobster fishery of Western Australia after 609-616. moving from effort to quota control. Marine Policy, 51: 452-464. Bellchambers LM, Fisher EA, Harry AV, and Travaille KL. 2016. Identifying potential risks for Charles A, Westlund L, Bartley DM, Fletcher WJ, Marine Stewardship Council assessment and Garcia S, Govan H, and Sanders J. -
An Early Oligocene Fish-Fauna from Japan Reconstructed from Otoliths
3 Zitteliana 90 An Early Oligocene fish-fauna from Japan reconstructed from otoliths Paläontologie GeoBio- 1 2 3 Bayerische Werner Schwarzhans *, Fumio Ohe & Yusuke Ando & Geobiologie Staatssammlung Center LMU München für Paläontologie und Geologie LMU München 1Ahrensburger Weg 103, D-22359 Hamburg, and Natural History Museum of Denmark, Zoological n München, 2017 Museum, Universitetsparken 15, DK-2100 Copenhagen, Denmark 2Nara National Research Institute for Cultural Properties, Nara 630-8577, Japan n Manuscript received 3Mizunami Fossil Museum, Mizunami, Gifu Prefecture 509-6132, Japan 27.04.2016; revision accepted 07.09.2016; *Corresponding author; E-mail: [email protected] available online: 30.05.2017 n ISSN 0373-9627 n ISBN 978-3-946705-02-4 Zitteliana 90, 3–26. Abstract The otoliths described in this study from the Late Eocene to Early Oligocene (biozone P18) of the Kishima Formation near Karatsu, Saga Prefecture, represent the earliest record of fossil otoliths from Japan and in fact the entire Northwest Pacific. They were obtained from outcrops along the Shimohirano River. A total of 13 otolith-based teleost taxa are recognized, 11 of which being identifiable to species level and new to science and five new genera. The new otolith-based genera are: Nishiberyx n. gen. (Berycidae), Sagaberyx n. gen. (Berycoidei family indet.), Namicauda n. gen. (Polymixiidae), Ortugobius n. gen. (tentatively placed in Gobiidae) and Cornusolea n. gen. (Soleidae); the new species are: Rhynchoconger placidus n. sp., Rhynchoconger subtilis n. sp., Saurida macilenta n. sp., Nishiberyx nishimotoi n. sp., Sagaberyx kishimaensis n. sp., Namicauda pulvinata n. sp., Liza brevirostris n. sp., Pontinus? karasawai n. sp., Ortugo- bius cascus n.