STUDIES on CRUCIFERAE: VIII. NOMENCLATURAL ADJUSTMENTS in DIPLOTAXIS DC. Until Recently, Only D.Erucoides and D.Acris Were Known
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Phenotypic Landscape Inference Reveals Multiple Evolutionary Paths to C4 Photosynthesis
RESEARCH ARTICLE elife.elifesciences.org Phenotypic landscape inference reveals multiple evolutionary paths to C4 photosynthesis Ben P Williams1†, Iain G Johnston2†, Sarah Covshoff1, Julian M Hibberd1* 1Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom; 2Department of Mathematics, Imperial College London, London, United Kingdom Abstract C4 photosynthesis has independently evolved from the ancestral C3 pathway in at least 60 plant lineages, but, as with other complex traits, how it evolved is unclear. Here we show that the polyphyletic appearance of C4 photosynthesis is associated with diverse and flexible evolutionary paths that group into four major trajectories. We conducted a meta-analysis of 18 lineages containing species that use C3, C4, or intermediate C3–C4 forms of photosynthesis to parameterise a 16-dimensional phenotypic landscape. We then developed and experimentally verified a novel Bayesian approach based on a hidden Markov model that predicts how the C4 phenotype evolved. The alternative evolutionary histories underlying the appearance of C4 photosynthesis were determined by ancestral lineage and initial phenotypic alterations unrelated to photosynthesis. We conclude that the order of C4 trait acquisition is flexible and driven by non-photosynthetic drivers. This flexibility will have facilitated the convergent evolution of this complex trait. DOI: 10.7554/eLife.00961.001 Introduction *For correspondence: Julian. The convergent evolution of complex traits is surprisingly common, with examples including camera- [email protected] like eyes of cephalopods, vertebrates, and cnidaria (Kozmik et al., 2008), mimicry in invertebrates and †These authors contributed vertebrates (Santos et al., 2003; Wilson et al., 2012) and the different photosynthetic machineries of equally to this work plants (Sage et al., 2011a). -
Flora Mediterranea 26
FLORA MEDITERRANEA 26 Published under the auspices of OPTIMA by the Herbarium Mediterraneum Panormitanum Palermo – 2016 FLORA MEDITERRANEA Edited on behalf of the International Foundation pro Herbario Mediterraneo by Francesco M. Raimondo, Werner Greuter & Gianniantonio Domina Editorial board G. Domina (Palermo), F. Garbari (Pisa), W. Greuter (Berlin), S. L. Jury (Reading), G. Kamari (Patras), P. Mazzola (Palermo), S. Pignatti (Roma), F. M. Raimondo (Palermo), C. Salmeri (Palermo), B. Valdés (Sevilla), G. Venturella (Palermo). Advisory Committee P. V. Arrigoni (Firenze) P. Küpfer (Neuchatel) H. M. Burdet (Genève) J. Mathez (Montpellier) A. Carapezza (Palermo) G. Moggi (Firenze) C. D. K. Cook (Zurich) E. Nardi (Firenze) R. Courtecuisse (Lille) P. L. Nimis (Trieste) V. Demoulin (Liège) D. Phitos (Patras) F. Ehrendorfer (Wien) L. Poldini (Trieste) M. Erben (Munchen) R. M. Ros Espín (Murcia) G. Giaccone (Catania) A. Strid (Copenhagen) V. H. Heywood (Reading) B. Zimmer (Berlin) Editorial Office Editorial assistance: A. M. Mannino Editorial secretariat: V. Spadaro & P. Campisi Layout & Tecnical editing: E. Di Gristina & F. La Sorte Design: V. Magro & L. C. Raimondo Redazione di "Flora Mediterranea" Herbarium Mediterraneum Panormitanum, Università di Palermo Via Lincoln, 2 I-90133 Palermo, Italy [email protected] Printed by Luxograph s.r.l., Piazza Bartolomeo da Messina, 2/E - Palermo Registration at Tribunale di Palermo, no. 27 of 12 July 1991 ISSN: 1120-4052 printed, 2240-4538 online DOI: 10.7320/FlMedit26.001 Copyright © by International Foundation pro Herbario Mediterraneo, Palermo Contents V. Hugonnot & L. Chavoutier: A modern record of one of the rarest European mosses, Ptychomitrium incurvum (Ptychomitriaceae), in Eastern Pyrenees, France . 5 P. Chène, M. -
Preliminary Review of the Rare Plants of the Niagara River Gorge, USA
PRELIMINARY REVIEW OF THE RARE PLANTS OF THE NIAGARA RIVER GORGE, U.S.A. AND CANADA Patricia M. Eckel Res Botanica A Missouri Botanical Garden Web Site http://www.mobot.org/plantscience/ResBot/index.htm May 26, 2004 Home PRELIMINARY REVIEW OF THE RARE PLANTS OF THE NIAGARA RIVER GORGE, U.S.A. AND CANADA by P.M. Eckel Clinton Herbarium Buffalo Museum of Science [Originally published in Clintonia (Botanical Magazine of the Niagara Frontier Botanical Society) 6(2, Supplement): 1-8. 1991. Reprinted with permission.] Because of a number of recent proposals to develop the Niagara River gorge and its environment by government and private interests, it was thought important to put together certain information accumulated during work done by the author over the past decade regarding the value of the gorge as a natural resource to the governments of Ontario and New York. The Niagara River is a strait connecting Lakes Ontario and Erie. The gorge section of the Niagara River extends seven miles from the cataracts of the river, situated beside the cities of Niagara Falls, New York, and Niagara Falls, Ontario, north to the cities of Lewiston, New York, and Queenston, Ontario (Bastedo, in Tesmer, 1981). The Niagara River, including its gorge, forms the international territorial boundary between the United States of America and the Dominion of Canada. It is not the purpose of this paper to describe in detail the geophysical and biological characteristics of this gorge except in the most general terms. It is oriented generally north-south, with east/west exposures of the steep gorge walls. -
The C4 Plant Lineages of Planet Earth
Journal of Experimental Botany, Vol. 62, No. 9, pp. 3155–3169, 2011 doi:10.1093/jxb/err048 Advance Access publication 16 March, 2011 REVIEW PAPER The C4 plant lineages of planet Earth Rowan F. Sage1,*, Pascal-Antoine Christin2 and Erika J. Edwards2 1 Department of Ecology and Evolutionary Biology, The University of Toronto, 25 Willcocks Street, Toronto, Ontario M5S3B2 Canada 2 Department of Ecology and Evolutionary Biology, Brown University, 80 Waterman St., Providence, RI 02912, USA * To whom correspondence should be addressed. E-mail: [email protected] Received 30 November 2010; Revised 1 February 2011; Accepted 2 February 2011 Abstract Using isotopic screens, phylogenetic assessments, and 45 years of physiological data, it is now possible to identify most of the evolutionary lineages expressing the C4 photosynthetic pathway. Here, 62 recognizable lineages of C4 photosynthesis are listed. Thirty-six lineages (60%) occur in the eudicots. Monocots account for 26 lineages, with a Downloaded from minimum of 18 lineages being present in the grass family and six in the sedge family. Species exhibiting the C3–C4 intermediate type of photosynthesis correspond to 21 lineages. Of these, 9 are not immediately associated with any C4 lineage, indicating that they did not share common C3–C4 ancestors with C4 species and are instead an independent line. The geographic centre of origin for 47 of the lineages could be estimated. These centres tend to jxb.oxfordjournals.org cluster in areas corresponding to what are now arid to semi-arid regions of southwestern North America, south- central South America, central Asia, northeastern and southern Africa, and inland Australia. -
Citation: Badenes-Pérez, F. R. 2019. Trap Crops and Insectary Plants in the Order 2 Brassicales
1 Citation: Badenes-Pérez, F. R. 2019. Trap Crops and Insectary Plants in the Order 2 Brassicales. Annals of the Entomological Society of America 112: 318-329. 3 https://doi.org/10.1093/aesa/say043 4 5 6 Trap Crops and Insectary Plants in the Order Brassicales 7 Francisco Rubén Badenes-Perez 8 Instituto de Ciencias Agrarias, Consejo Superior de Investigaciones Científicas, 28006 9 Madrid, Spain 10 E-mail: [email protected] 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 ABSTRACT This paper reviews the most important cases of trap crops and insectary 26 plants in the order Brassicales. Most trap crops in the order Brassicales target insects that 27 are specialist in plants belonging to this order, such as the diamondback moth, Plutella 28 xylostella L. (Lepidoptera: Plutellidae), the pollen beetle, Meligethes aeneus Fabricius 29 (Coleoptera: Nitidulidae), and flea beetles inthe genera Phyllotreta Psylliodes 30 (Coleoptera: Chrysomelidae). In most cases, the mode of action of these trap crops is the 31 preferential attraction of the insect pest for the trap crop located next to the main crop. 32 With one exception, these trap crops in the order Brassicales have been used with 33 brassicaceous crops. Insectary plants in the order Brassicales attract a wide variety of 34 natural enemies, but most studies focus on their effect on aphidofagous hoverflies and 35 parasitoids. The parasitoids benefiting from insectary plants in the order Brassicales 36 target insects pests ranging from specialists, such as P. xylostella, to highly polyfagous, 37 such as the stink bugs Euschistus conspersus Uhler and Thyanta pallidovirens Stål 38 (Hemiptera: Pentatomidae). -
Ethnobotanical Study on Plant Used by Semi-Nomad Descendants’ Community in Ouled Dabbeb—Southern Tunisia
plants Article Ethnobotanical Study on Plant Used by Semi-Nomad Descendants’ Community in Ouled Dabbeb—Southern Tunisia Olfa Karous 1,2,* , Imtinen Ben Haj Jilani 1,2 and Zeineb Ghrabi-Gammar 1,2 1 Institut National Agronomique de Tunisie (INAT), Département Agronoime et Biotechnologie Végétale, Université de Carthage, 43 Avenue Charles Nicolle, 1082 Cité Mahrajène, Tunisia; [email protected] (I.B.H.J.); [email protected] (Z.G.-G.) 2 Faculté des Lettres, Université de Manouba, des Arts et des Humanités de la Manouba, LR 18ES13 Biogéographie, Climatologie Appliquée et Dynamiques Environnementales (BiCADE), 2010 Manouba, Tunisia * Correspondence: [email protected] Abstract: Thanks to its geographic location between two bioclimatic belts (arid and Saharan) and the ancestral nomadic roots of its inhabitants, the sector of Ouled Dabbeb (Southern Tunisia) represents a rich source of plant biodiversity and wide ranging of ethnobotanical knowledge. This work aims to (1) explore and compile the unique diversity of floristic and ethnobotanical information on different folk use of plants in this sector and (2) provide a novel insight into the degree of knowledge transmission between the current population and their semi-nomadic forefathers. Ethnobotanical interviews and vegetation inventories were undertaken during 2014–2019. Thirty informants aged from 27 to 84 were interviewed. The ethnobotanical study revealed that the local community of Ouled Dabbeb perceived the use of 70 plant species belonging to 59 genera from 31 families for therapeutic (83%), food (49%), domestic (15%), ethnoveterinary (12%), cosmetic (5%), and ritual purposes (3%). Moreover, they were knowledgeable about the toxicity of eight taxa. Nearly 73% of reported ethnospecies were freely gathered from the wild. -
Field Identification of the 50 Most Common Plant Families in Temperate Regions
Field identification of the 50 most common plant families in temperate regions (including agricultural, horticultural, and wild species) by Lena Struwe [email protected] © 2016, All rights reserved. Note: Listed characteristics are the most common characteristics; there might be exceptions in rare or tropical species. This compendium is available for free download without cost for non- commercial uses at http://www.rci.rutgers.edu/~struwe/. The author welcomes updates and corrections. 1 Overall phylogeny – living land plants Bryophytes Mosses, liverworts, hornworts Lycophytes Clubmosses, etc. Ferns and Fern Allies Ferns, horsetails, moonworts, etc. Gymnosperms Conifers, pines, cycads and cedars, etc. Magnoliids Monocots Fabids Ranunculales Rosids Malvids Caryophyllales Ericales Lamiids The treatment for flowering plants follows the APG IV (2016) Campanulids classification. Not all branches are shown. © Lena Struwe 2016, All rights reserved. 2 Included families (alphabetical list): Amaranthaceae Geraniaceae Amaryllidaceae Iridaceae Anacardiaceae Juglandaceae Apiaceae Juncaceae Apocynaceae Lamiaceae Araceae Lauraceae Araliaceae Liliaceae Asphodelaceae Magnoliaceae Asteraceae Malvaceae Betulaceae Moraceae Boraginaceae Myrtaceae Brassicaceae Oleaceae Bromeliaceae Orchidaceae Cactaceae Orobanchaceae Campanulaceae Pinaceae Caprifoliaceae Plantaginaceae Caryophyllaceae Poaceae Convolvulaceae Polygonaceae Cucurbitaceae Ranunculaceae Cupressaceae Rosaceae Cyperaceae Rubiaceae Equisetaceae Rutaceae Ericaceae Salicaceae Euphorbiaceae Scrophulariaceae -
Washington Flora Checklist a Checklist of the Vascular Plants of Washington State Hosted by the University of Washington Herbarium
Washington Flora Checklist A checklist of the Vascular Plants of Washington State Hosted by the University of Washington Herbarium The Washington Flora Checklist aims to be a complete list of the native and naturalized vascular plants of Washington State, with current classifications, nomenclature and synonymy. The checklist currently contains 3,929 terminal taxa (species, subspecies, and varieties). Taxa included in the checklist: * Native taxa whether extant, extirpated, or extinct. * Exotic taxa that are naturalized, escaped from cultivation, or persisting wild. * Waifs (e.g., ballast plants, escaped crop plants) and other scarcely collected exotics. * Interspecific hybrids that are frequent or self-maintaining. * Some unnamed taxa in the process of being described. Family classifications follow APG IV for angiosperms, PPG I (J. Syst. Evol. 54:563?603. 2016.) for pteridophytes, and Christenhusz et al. (Phytotaxa 19:55?70. 2011.) for gymnosperms, with a few exceptions. Nomenclature and synonymy at the rank of genus and below follows the 2nd Edition of the Flora of the Pacific Northwest except where superceded by new information. Accepted names are indicated with blue font; synonyms with black font. Native species and infraspecies are marked with boldface font. Please note: This is a working checklist, continuously updated. Use it at your discretion. Created from the Washington Flora Checklist Database on September 17th, 2018 at 9:47pm PST. Available online at http://biology.burke.washington.edu/waflora/checklist.php Comments and questions should be addressed to the checklist administrators: David Giblin ([email protected]) Peter Zika ([email protected]) Suggested citation: Weinmann, F., P.F. Zika, D.E. Giblin, B. -
E. Biondi, L. Gubellini, M. Pinzi & S. Casavecchia the Vascular Flora Of
Fl. Medit. 22: 67-167 doi: 10.7320/FlMedit22.067 Version of Record published online on 28 December 2012 E. Biondi, L. Gubellini, M. Pinzi & S. Casavecchia The vascular flora of Conero Regional Nature Park (Marche, Central Italy) To Aldo J. B. Brilli-Cattarini, eminent botanist and expert resear- cher on the Marche region flora and par- ticularly on the Conero flora. He was the founder of the “Centro Ricerche Floristiche Marche” of Pesaro and Urbino Province. He has been a master for all of us even in the preparation of this work, with great gene rosity, he offered us his unique experience with enthusiasm. Abstract Biondi E., Gubellini L., Pinzi M. & Casavecchia, S.: The vascular flora of Conero Regional Nature Park (Marche, Central Italy). — Fl. Medit. 22: 67-167. 2012. — ISSN: 1120-4052 print- ed, 2240-4538 online. It is presented the vascular flora of Conero Regional Park. The paper starts with a brief presen- tation of the park territory (geography, geomorphology and bioclimate) that arises in the cen- tral Adriatic side of the Italian peninsula. The vegetation is briefly described thanks to the detailed phytosociological analysis carried out in the territory and to detailed maps on different scales. The description of vegetation allows indicating, for most of the species listed, their par- ticipation in the plant communities present in the area. The floristic list comprises 1169 entities, of specific and sub specific levels, that belong to 101 families and 507 genera. It also includes 64 species currently disappeared or not recently found in the study area, indicated by NP acronym (not present). -
Brassica Spp.) – 151
II.3. BRASSICA CROPS (BRASSICA SPP.) – 151 Chapter 3. Brassica crops (Brassica spp.) This chapter deals with the biology of Brassica species which comprise oilseed rape, turnip rape, mustards, cabbages and other oilseed crops. The chapter contains information for use during the risk/safety regulatory assessment of genetically engineered varieties intended to be grown in the environment (biosafety). It includes elements of taxonomy for a range of Brassica species, their centres of origin and distribution, reproductive biology, genetics, hybridisation and introgression, crop production, interactions with other organisms, pests and pathogens, breeding methods and biotechnological developments, and an annex on common pathogens and pests. The OECD gratefully acknowledges the contribution of Dr. R.K. Downey (Canada), the primary author, without whom this chapter could not have been written. The chapter was prepared by the OECD Working Group on the Harmonisation of Regulatory Oversight in Biotechnology, with Canada as the lead country. It updates and completes the original publication on the biology of Brassica napus issued in 1997, and was initially issued in December 2012. Data from USDA Foreign Agricultural Service and FAOSTAT have been updated. SAFETY ASSESSMENT OF TRANSGENIC ORGANISMS: OECD CONSENSUS DOCUMENTS, VOLUME 5 © OECD 2016 152 – II.3. BRASSICA CROPS (BRASSICA SPP.) Introduction The plants within the family Brassicaceae constitute one of the world’s most economically important plant groups. They range from noxious weeds to leaf and root vegetables to oilseed and condiment crops. The cole vegetables are perhaps the best known group. Indeed, the Brassica vegetables are a dietary staple in every part of the world with the possible exception of the tropics. -
Screening Effects of Methanol Extracts of Diplotaxis Tenuifolia and Reseda Lutea on Enzymatic Antioxidant Defense Systems and A
Turk J Pharm Sci 2018;15(1):97-102 DOI: 10.4274/tjps.82473 ORIGINAL ARTICLE Screening Effects of Methanol Extracts of Diplotaxis tenuifolia and Reseda lutea on Enzymatic Antioxidant Defense Systems and Aldose Reductase Activity Diplotaxis tenuifolia ve Reseda lutea Metanol Özütünün Antioksidan Savunma Sistemi Enzimleri ve Aldoz Redüktaz Aktivitesi Üzerinde Olan Etkisinin İncelenmesi Khalid Sharro ABDALRAHMAN1, Merve Gülşah GÜNEŞ1, Naznoosh SHOMALI1*, Belgin Sultan İŞGÖR2, Özlem YILDIRIM1 1Ankara University, Faculty of Science, Department of Biology, Ankara, Turkey 2Atılım University, Faculty of Engineering, Department of Chemical Engineering and Applied Chemistry, Ankara, Turkey ABSTRACT Objectives: The aim of the study was to investigate the effects of methanol extracts from the flowers and leaves of Diplotaxis tenuifolia and Reseda lutea on the activity of AR, CAT, GST, and GPx. Materials and Methods: Total phenolic and flavonoid contents of the plant samples were evaluated using Folin-Ciocalteu reagent and aluminum chloride colorimetric methods. Also, the effects of extracts on CAT, GST, GPx, and AR enzyme activities were investigated using kinetic assays. Results: The highest phenolic and flavonoid contents were detected in the methanol extract of D. tenuifolia leaves with 144.49±0.29 mg gallic acid equivalent/L and 250.485±0.002 quercetin equivalent/L, respectively. The best activity profile for GST and GPx were observed in the extract of leaves belonging to D. tenuifolia with IC50 values of 121±0.05 and 140±0.001 ng/mL, respectively. According to the results, methanol extracts from leaves of R. lutea and D. tenuifolia showed no significant activity potential on AR. Moreover, none of the studied extracts demonstrated any reasonable CAT activation potential. -
Checklist of the Washington Baltimore Area
Annotated Checklist of the Vascular Plants of the Washington - Baltimore Area Part I Ferns, Fern Allies, Gymnosperms, and Dicotyledons by Stanwyn G. Shetler and Sylvia Stone Orli Department of Botany National Museum of Natural History 2000 Department of Botany, National Museum of Natural History Smithsonian Institution, Washington, DC 20560-0166 ii iii PREFACE The better part of a century has elapsed since A. S. Hitchcock and Paul C. Standley published their succinct manual in 1919 for the identification of the vascular flora in the Washington, DC, area. A comparable new manual has long been needed. As with their work, such a manual should be produced through a collaborative effort of the region’s botanists and other experts. The Annotated Checklist is offered as a first step, in the hope that it will spark and facilitate that effort. In preparing this checklist, Shetler has been responsible for the taxonomy and nomenclature and Orli for the database. We have chosen to distribute the first part in preliminary form, so that it can be used, criticized, and revised while it is current and the second part (Monocotyledons) is still in progress. Additions, corrections, and comments are welcome. We hope that our checklist will stimulate a new wave of fieldwork to check on the current status of the local flora relative to what is reported here. When Part II is finished, the two parts will be combined into a single publication. We also maintain a Web site for the Flora of the Washington-Baltimore Area, and the database can be searched there (http://www.nmnh.si.edu/botany/projects/dcflora).