Echinodermata: Ophiuroidea) in the Gulf of Mexico
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Filename Bibw.Wpd
May 11, 2016 filename bibw.wpd Wachsmuth, C. and F. Springer. 1897. North American Crinoidea Camerata. Memoirs of the Museum of Comparative Zoology [Harvard], vols. 20, 21 + atlas of eighty-three plates. [vol. 21 contains pp. 361-837 of the monograph] [source WKS p. 332 regarding Onychaster] [see plate 55 fig. 3 and text on p. 566: Remarks on Actinocrinus multiramosus W &Sp. from Keokuk group, from Indian creek, Montgomery Co., Ind. and from Canton, Washington Co., Ind.] [Onychaster rarely found by itself. Onychaster at Indian Creek is on A. multiramosos. Onychaster at Canton is on A. multiramosus and also on most specimens of Scytalocrinus robustus (Hall). Not seen on any other species] ["The fact that this Ophiurid is only found associated with certain species, and there always under similar conditions, and the frequency of this occurrence, would seem to indicate that the position between the arms of these crinoids was its favorite resting place, in which it either found protection, or some special facility for obtaining nourishment."] Waddington, Janet, Peter H. von Bitter, and Desmond Collins. 1978. Catalogue of type invertebrate, plant, and trace fossils in the Royal Ontario Museum. Life Sciences Miscellaneous Publications, Royal Ontario Museum, 151 pp. [Asterozoa on p. 132; the list is incomplete as it does not include material mentioned by Schuchert, nor Johnson's master's thesis Encrinaster primordialis which was listed in the Fritz ROM type catalog; also now there are newer types described by Eckert] Walcott, C. D. 1890. The value of the term "Hudson River Group" in geologic nomenclature. Bull. G.S.A. -
Preliminary Mass-Balance Food Web Model of the Eastern Chukchi Sea
NOAA Technical Memorandum NMFS-AFSC-262 Preliminary Mass-balance Food Web Model of the Eastern Chukchi Sea by G. A. Whitehouse U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service Alaska Fisheries Science Center December 2013 NOAA Technical Memorandum NMFS The National Marine Fisheries Service's Alaska Fisheries Science Center uses the NOAA Technical Memorandum series to issue informal scientific and technical publications when complete formal review and editorial processing are not appropriate or feasible. Documents within this series reflect sound professional work and may be referenced in the formal scientific and technical literature. The NMFS-AFSC Technical Memorandum series of the Alaska Fisheries Science Center continues the NMFS-F/NWC series established in 1970 by the Northwest Fisheries Center. The NMFS-NWFSC series is currently used by the Northwest Fisheries Science Center. This document should be cited as follows: Whitehouse, G. A. 2013. A preliminary mass-balance food web model of the eastern Chukchi Sea. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-262, 162 p. Reference in this document to trade names does not imply endorsement by the National Marine Fisheries Service, NOAA. NOAA Technical Memorandum NMFS-AFSC-262 Preliminary Mass-balance Food Web Model of the Eastern Chukchi Sea by G. A. Whitehouse1,2 1Alaska Fisheries Science Center 7600 Sand Point Way N.E. Seattle WA 98115 2Joint Institute for the Study of the Atmosphere and Ocean University of Washington Box 354925 Seattle WA 98195 www.afsc.noaa.gov U.S. DEPARTMENT OF COMMERCE Penny. S. Pritzker, Secretary National Oceanic and Atmospheric Administration Kathryn D. -
Brittle-Star Mass Occurrence on a Late Cretaceous Methane Seep from South Dakota, USA Received: 16 May 2018 Ben Thuy1, Neil H
www.nature.com/scientificreports OPEN Brittle-star mass occurrence on a Late Cretaceous methane seep from South Dakota, USA Received: 16 May 2018 Ben Thuy1, Neil H. Landman2, Neal L. Larson3 & Lea D. Numberger-Thuy1 Accepted: 29 May 2018 Articulated brittle stars are rare fossils because the skeleton rapidly disintegrates after death and only Published: xx xx xxxx fossilises intact under special conditions. Here, we describe an extraordinary mass occurrence of the ophiacanthid ophiuroid Brezinacantha tolis gen. et sp. nov., preserved as articulated skeletons from an upper Campanian (Late Cretaceous) methane seep of South Dakota. It is uniquely the frst fossil case of a seep-associated ophiuroid. The articulated skeletons overlie centimeter-thick accumulations of dissociated skeletal parts, suggesting lifetime densities of approximately 1000 individuals per m2, persisting at that particular location for several generations. The ophiuroid skeletons on top of the occurrence were preserved intact most probably because of increased methane seepage, killing the individuals and inducing rapid cementation, rather than due to storm-induced burial or slumping. The mass occurrence described herein is an unambiguous case of an autochthonous, dense ophiuroid community that persisted at a particular spot for some time. Thus, it represents a true fossil equivalent of a recent ophiuroid dense bed, unlike other cases that were used in the past to substantiate the claim of a mid-Mesozoic predation-induced decline of ophiuroid dense beds. Brittle stars, or ophiuroids, are among the most abundant and widespread components of the marine benthos, occurring at all depths and latitudes of the world oceans1. Most of the time, however, ophiuroids tend to live a cryptic life hidden under rocks, inside sponges, epizoic on corals or buried in the mud (e.g.2) to such a point that their real abundance is rarely appreciated at frst sight. -
A New Bathyal Ophiacanthid Brittle Star (Ophiuroidea: Ophiacanthidae) with Caribbean Affinities from the Plio-Pleistocene of the Mediterranean
Zootaxa 4820 (1): 019–030 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2020 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4820.1.2 http://zoobank.org/urn:lsid:zoobank.org:pub:ED703EC8-3124-413F-8B17-3C1695B789C5 A new bathyal ophiacanthid brittle star (Ophiuroidea: Ophiacanthidae) with Caribbean affinities from the Plio-Pleistocene of the Mediterranean LEA D. NUMBERGER-THUY & BEN THUY* Natural History Museum Luxembourg, Department of Palaeontology, 25, rue Münster, 2160 Luxembourg, Luxembourg; https://orcid.org/0000-0001-6097-995X *corresponding author: [email protected]; https://orcid.org/0000-0001-8231-9565 Abstract Identifiable remains of large deep-sea invertebrates are exceedingly rare in the fossil record. Thus, every new discovery adds to a better understanding of ancient deep-sea environments based on direct fossil evidence. Here we describe a collection of dissociated skeletal parts of ophiuroids (brittle stars) from the latest Pliocene to earliest Pleistocene of Sicily, Italy, preserved as microfossils in sediments deposited at shallow bathyal depths. The material belongs to a previously unknown species of ophiacanthid brittle star, Ophiacantha oceani sp. nov. On the basis of morphological comparison of skeletal microstructures, in particular spine articulations and vertebral articular structures of the lateral arm plates, we conclude that the new species shares closest ties with Ophiacantha stellata, a recent species living in the present-day Caribbean at bathyal depths. Since colonization of the deep Mediterranean following the Messinian crisis at the end of the Miocene was only possibly via the Gibraltar Sill, the presence of tropical western Atlantic clades in the Plio-Pleistocene of the Mediterranean suggests a major deep-sea faunal turnover yet to be explored. -
Phylogenomic Resolution of the Class Ophiuroidea Unlocks a Global Microfossil Record
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 24, 1874–1879, August 18, 2014 ª2014 Elsevier Ltd All rights reserved http://dx.doi.org/10.1016/j.cub.2014.06.060 Report Phylogenomic Resolution of the Class Ophiuroidea Unlocks a Global Microfossil Record Timothy D. O’Hara,1,* Andrew F. Hugall,1 Ben Thuy,2 We used a phylogenomic approach to address these defi- and Adnan Moussalli1 ciencies, obtaining 52 de novo ophiuroid transcriptomes and 1Museum Victoria, GPO Box 666, Melbourne, VIC 3001, three from other echinoderm classes, in addition to three pub- Australia lically available transcriptomes and three genomes (see Table 2Section Pale´ ontologie, Muse´ e National d’Histoire Naturelle du S1 available online). Twenty-nine of the ophiuroid transcrip- Luxembourg, 24 Rue Mu¨ nster, 2160 Luxembourg tomes were obtained from deep-sea (>500 m) samples, to ensure adequate taxonomic representation across the class. We identified and aligned 425 orthologous genes that could Summary be annotated using available sea urchin, hemichordate, or actinopterygian genomes (Table S2). After trimming, we used Our understanding of the origin, evolution, and biogeog- 102,143 amino acid positions to reconstruct a phylogeny of raphy of seafloor fauna is limited because we have insuf- the Echinodermata, with a focus on the ophiuroids (Figure 1). ficient spatial and temporal data to resolve underlying The resulting sequence matrix is 85% complete (Figure S1) processes [1]. The abundance and wide distribution of mod- and is the largest genetic data set ever assembled to analyze ern and disarticulated fossil Ophiuroidea [2], including brittle phylogenetic relationships within echinoderms. -
Key to the Common Shallow-Water Brittle Stars (Echinodermata: Ophiuroidea) of the Gulf of Mexico and Caribbean Sea
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/228496999 Key to the common shallow-water brittle stars (Echinodermata: Ophiuroidea) of the Gulf of Mexico and Caribbean Sea Article · January 2007 CITATIONS READS 10 702 1 author: Christopher Pomory University of West Florida 34 PUBLICATIONS 303 CITATIONS SEE PROFILE All content following this page was uploaded by Christopher Pomory on 21 May 2014. The user has requested enhancement of the downloaded file. All in-text references underlined in blue are added to the original document and are linked to publications on ResearchGate, letting you access and read them immediately. 1 Key to the common shallow-water brittle stars (Echinodermata: Ophiuroidea) of the Gulf of Mexico and Caribbean Sea CHRISTOPHER M. POMORY 2007 Department of Biology, University of West Florida, 11000 University Parkway, Pensacola, FL 32514, USA. [email protected] ABSTRACT A key is given for 85 species of ophiuroids from the Gulf of Mexico and Caribbean Sea covering a depth range from the intertidal down to 30 m. Figures highlighting important anatomical features associated with couplets in the key are provided. 2 INTRODUCTION The Caribbean region is one of the major coral reef zoogeographic provinces and a region of intensive human use of marine resources for tourism and fisheries (Aide and Grau, 2004). With the world-wide decline of coral reefs, and deterioration of shallow-water marine habitats in general, ecological and biodiversity studies have become more important than ever before (Bellwood et al., 2004). Ecological and biodiversity studies require identification of collected specimens, often by biologists not specializing in taxonomy, and therefore identification guides easily accessible to a diversity of biologists are necessary. -
National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
National monitoring program for biodiversity and non-indigenous species in Egypt January 2016 1 TABLE OF CONTENTS page Acknowledgements 3 Preamble 4 Chapter 1: Introduction 8 Overview of Egypt Biodiversity 37 Chapter 2: Institutional and regulatory aspects 39 National Legislations 39 Regional and International conventions and agreements 46 Chapter 3: Scientific Aspects 48 Summary of Egyptian Marine Biodiversity Knowledge 48 The Current Situation in Egypt 56 Present state of Biodiversity knowledge 57 Chapter 4: Development of monitoring program 58 Introduction 58 Conclusions 103 Suggested Monitoring Program Suggested monitoring program for habitat mapping 104 Suggested marine MAMMALS monitoring program 109 Suggested Marine Turtles Monitoring Program 115 Suggested Monitoring Program for Seabirds 117 Suggested Non-Indigenous Species Monitoring Program 121 Chapter 5: Implementation / Operational Plan 128 Selected References 130 Annexes 141 2 AKNOWLEGEMENTS 3 Preamble The Ecosystem Approach (EcAp) is a strategy for the integrated management of land, water and living resources that promotes conservation and sustainable use in an equitable way, as stated by the Convention of Biological Diversity. This process aims to achieve the Good Environmental Status (GES) through the elaborated 11 Ecological Objectives and their respective common indicators. Since 2008, Contracting Parties to the Barcelona Convention have adopted the EcAp and agreed on a roadmap for its implementation. First phases of the EcAp process led to the accomplishment of 5 steps of the scheduled 7-steps process such as: 1) Definition of an Ecological Vision for the Mediterranean; 2) Setting common Mediterranean strategic goals; 3) Identification of an important ecosystem properties and assessment of ecological status and pressures; 4) Development of a set of ecological objectives corresponding to the Vision and strategic goals; and 5) Derivation of operational objectives with indicators and target levels. -
The Echinoderm Fauna of Turkey with New Records from the Levantine Coast of Turkey
Proc. of middle East & North Africa Conf. For Future of Animal Wealth THE ECHINODERM FAUNA OF TURKEY WITH NEW RECORDS FROM THE LEVANTINE COAST OF TURKEY Elif Özgür1, Bayram Öztürk2 and F. Saadet Karakulak2 1Faculty of Fisheries, Akdeniz University, TR-07058 Antalya, Turkey 2İstanbul University, Faculty of Fisheries, Ordu Cad.No.200, 34470 Laleli- Istanbul, Turkey Corresponding author e-mail: [email protected] ABSTRACT The echinoderm fauna of Turkey consists of 80 species (two Crinoidea, 22 Asteroidea, 18 Ophiuroidea, 20 Echinoidea and 18 Holothuroidea). In this study, seven echinoderm species are reported for the first time from the Levantine coast of Turkey. These are, five ophiroid species; Amphipholis squamata, Amphiura chiajei, Amphiura filiformis, Ophiopsila aranea, and Ophiothrix quinquemaculata and two echinoid species; Echinocyamus pusillus and Stylocidaris affinis. Turkey is surrounded by four seas with different hydrographical characteristics and Turkish Straits System (Çanakkale Strait, Marmara Sea and İstanbul Strait) serve both as a biological corridor and barrier between the Aegean and Black Seas. The number of echinoderm species in the coasts of Turkey also varies due to the different biotic environments of these seas. There are 14 echinoderm species reported from the Black Sea, 19 species from the İstanbul Strait, 51 from the Marmara Sea, 71 from the Aegean Sea and 42 from the Levantine coasts of Turkey. Among these species, Asterias rubens, Ophiactis savignyi, Diadema setosum, and Synaptula reciprocans are alien species for the Turkish coasts. Key words: Echinodermata, new records, Levantine Sea, Turkey. Cairo International Covention Center , Egypt , 16 - 18 – October , (2008), pp. 571 - 581 Elif Özgür et al. -
Amphiura Filiformis, We First Highlighted a Blue-Green Light Sensitivity Using a Behavioural Approach
High opsin diversity in a non-visual infaunal brittle star Delroisse et al. Delroisse et al. BMC Genomics 2014, 15:1035 http://www.biomedcentral.com/1471-2164/15/1035 Delroisse et al. BMC Genomics 2014, 15:1035 http://www.biomedcentral.com/1471-2164/15/1035 RESEARCH ARTICLE Open Access High opsin diversity in a non-visual infaunal brittle star Jérôme Delroisse1*, Esther Ullrich-Lüter2, Olga Ortega-Martinez3, Sam Dupont3, Maria-Ina Arnone4, Jérôme Mallefet5 and Patrick Flammang1 Abstract Background: In metazoans, opsins are photosensitive proteins involved in both vision and non-visual photoreception. Echinoderms have no well-defined eyes but several opsin genes were found in the purple sea urchin (Strongylocentrotus purpuratus) genome. Molecular data are lacking for other echinoderm classes although many species are known to be light sensitive. Results: In this study focused on the European brittle star Amphiura filiformis, we first highlighted a blue-green light sensitivity using a behavioural approach. We then identified 13 new putative opsin genes against eight bona fide opsin genes in the genome of S. purpuratus. Six opsins were included in the rhabdomeric opsin group (r-opsins). In addition, one putative ciliary opsin (c-opsin), showing high similarity with the c-opsin of S. purpuratus (Sp-opsin 1), one Go opsin similar to Sp-opsins 3.1 and 3.2, two basal-branch opsins similar to Sp-opsins 2 and 5, and two neuropsins similar to Sp-opsin 8, were identified. Finally, two sequences from one putative RGR opsin similar to Sp-opsin 7 were also detected. Adult arm transcriptome analysis pinpointed opsin mRNAs corresponding to one r-opsin, one neuropsin and the homologue of Sp-opsin 2. -
Echinodermata, Ophiuroidea)
Vol. 16: 105–113, 2012 AQUATIC BIOLOGY Published online July 19 doi: 10.3354/ab00435 Aquat Biol Slow arm regeneration in the Antarctic brittle star Ophiura crassa (Echinodermata, Ophiuroidea) Melody S. Clark*, Terri Souster British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, Cambridge CB3 0ET, UK ABSTRACT: Regeneration of arms in brittle stars is thought to proceed slowly in low temperature environments. Here a survey of natural arm damage and arm regeneration rates is documented in the Antarctic brittle star Ophiura crassa. This relatively small ophiuroid, a detritivore found amongst red macroalgae, displays high levels of natural arm damage and repair. This is largely thought to be due to ice damage in the shallow waters it inhabits. The time scale of arm regener- ation was measured in an aquarium-based 10 mo experiment. There was a delayed regeneration phase of 7 mo before arm growth was detectable in this species. This is 2 mo longer than the longest time previously described, which was in another Antarctic ophiuroid, Ophionotus victo- riae. The subsequent regeneration of arms in O. crassa occurred at a rate of approximately 0.16 mm mo−1. To date, this is the slowest regeneration rate known of any ophiuroid. The confir- mation that such a long delay before arm regeneration occurs in a second Antarctic species pro- vides strong evidence that this phenomenon is yet another characteristic feature of Southern Ocean species, along with deferred maturity, slowed growth and development rates. It is unclear whether delayed initial regeneration phases are adaptations to, or limitations of, low temperature environments. -
Benthic Field Guide 5.5.Indb
Field Identifi cation Guide to Heard Island and McDonald Islands Benthic Invertebrates Invertebrates Benthic Moore Islands Kirrily and McDonald and Hibberd Ty Island Heard to Guide cation Identifi Field Field Identifi cation Guide to Heard Island and McDonald Islands Benthic Invertebrates A guide for scientifi c observers aboard fi shing vessels Little is known about the deep sea benthic invertebrate diversity in the territory of Heard Island and McDonald Islands (HIMI). In an initiative to help further our understanding, invertebrate surveys over the past seven years have now revealed more than 500 species, many of which are endemic. This is an essential reference guide to these species. Illustrated with hundreds of representative photographs, it includes brief narratives on the biology and ecology of the major taxonomic groups and characteristic features of common species. It is primarily aimed at scientifi c observers, and is intended to be used as both a training tool prior to deployment at-sea, and for use in making accurate identifi cations of invertebrate by catch when operating in the HIMI region. Many of the featured organisms are also found throughout the Indian sector of the Southern Ocean, the guide therefore having national appeal. Ty Hibberd and Kirrily Moore Australian Antarctic Division Fisheries Research and Development Corporation covers2.indd 113 11/8/09 2:55:44 PM Author: Hibberd, Ty. Title: Field identification guide to Heard Island and McDonald Islands benthic invertebrates : a guide for scientific observers aboard fishing vessels / Ty Hibberd, Kirrily Moore. Edition: 1st ed. ISBN: 9781876934156 (pbk.) Notes: Bibliography. Subjects: Benthic animals—Heard Island (Heard and McDonald Islands)--Identification.