Debian Med Integrated Software Environment for All Medical Purposes Based on Debian GNU/Linux
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Examples of the Electronic Health Record (EHR)
Examples of the Electronic Health Record (EHR) What is Biomedical & Health Informatics? William Hersh Copyright 2020 Oregon Health & Science University Examples of the EHR • Using the Veterans Health Information Systems and Technology Architecture (VistA) • Why VistA? – State-of-the-art EHR that has transformed healthcare in the Veteran’s Health Administration (VHA) (Perlin, 2006; Byrne, 2010) – Not that pretty, but has all of the modern features of the EHR, e.g., clinical decision support (CDS), computerized provider order entry (CPOE), etc. – Distributed under open-source model, unlike most other vendors who do not even allow screen shots to be shown outside their customers’ institutions • Fascinating story (Allen, 2017), but VistA now being phased out in favor of Cerner EHR adopted by Department of Defense (VA, 2017) – https://www.ehrm.va.gov/ WhatIs5 2 1 Some details about VistA • Server written in M (formerly called MUMPS), accessed via command-line interface – Runs in commercial Intersystems Cache (on many platforms) or open-source GT.M (Linux only) • Client (called CPRS) written in Delphi and providers graphical user interface – Only runs on Windows (just about all versions) WhatIs5 3 Logging on to CPRS, the front end to VistA WhatIs5 4 2 Choosing a patient WhatIs5 5 Cover sheet – overview WhatIs5 6 3 Drilling down to details of a problem WhatIs5 7 Details of an allergy WhatIs5 8 4 Viewing vital signs over time WhatIs5 9 More details on problems WhatIs5 10 5 List of active orders WhatIs5 11 Viewing the patient’s notes WhatIs5 12 -
Open Source As an Alternative for Clinical Information Systems Adoption
Open Source as an Alternative for Clinical Information Systems Adoption Placide Poba-Nzaou , Université du Québec à Montréal Josianne Marsan , Université Laval Guy Paré , HEC Montréal Louis Raymond , Université du Québec à Trois-Rivières Health Informatics & Technology Conference October 20-22, 2014 - Baltimore, MD, USA Agenda • Context • Research Questions • Conceptual Background • Research Method • Results • Discussion • Conclusion 2 Context • Electronic Health Records (EHR) are at the heart of most health system reforms – “Mission-critical” applications for hospitals • High costs and low level of interoperability of commercial EHR software has led a growing number of hospitals to adopt open source software (OSS) solutions – Examples of OSS EHR: VistA, Oscar, GNU Med, OpenEMR and OpenMRS, etc. 3 Research Questions • What can motivate a Hospital to adopt an Open Source EHR ? • What are the main challenges faced by a hospital adopting an Open Source EHR ? • What can be done to deal with these challenges ? 4 Conceptual Background • Motivations to adopt an Enterprise System by healthcare organizations (Poba-Nzaou et al., 2014) – Strategic (Clinical vs. Managerial) – Operational (Clinical vs. Managerial) – Financial – Technological • Hybrid organization – “Organization that combine different institutional logics in unprecedented ways” (Scott and Meyer 1991) • E.g.: integration of not-for-profit and for-profit logics (Battilana et al., 2012) – Challenges faced by Hybrid Organizations in search of sustainability (Battilana et al., 2012) – #1: Legal Structure – #2: Financing – #3: Customers and Beneficiaries 5 – #4: Organizational Culture and Talent Development Conceptual Background (continued) – OSS governance models • “the means of achieving the direction, control, and coordination of wholly or partially autonomous individuals and organizations on behalf of an OSS development project to which they jointly contribute” (Markus, 2007) – “community managed” vs. -
Mobile Applications for the Health Sector
Mobile Applications for the Health Sector Christine Zhenwei Qiang, Masatake Yamamichi*, Vicky Hausman and Daniel Altman ICT Sector Unit World Bank December 2011 This report is the product of the staff and consultants of the World Bank. The findings, interpretations, and conclusions do not necessarily reflect the views of the Executive Directors of the World Bank or the governments they represent. The World Bank does not guarantee the accuracy of the data included in this work. * Corresponding author: 1818 H Street NW, MSN MC6-616, Washington DC 20433, USA. [email protected] Contents Abbreviations ................................................................................................................... 3 Acknowledgements ........................................................................................................... 4 Executive Summary ........................................................................................................... 5 1 Introduction ........................................................................................................... 11 1.1 What is mobile health? 11 1.2 Technological context for mobile health 12 1.3 Perceived potential of mobile health 13 1.4 The mobile health ecosystem 16 1.5 Social goals of investments in mobile health 17 1.6 How does mobile health relate to other intersections of health and technology? 19 2 Health Needs in Developing Countries ...................................................................... 21 2.1 Common health burdens 21 2.2 Challenges -
Installation Iraf
INSTALLATION IRAF o IRAF: IMAGE REDUCTION AND ANALYSIS FACILITY (NOAO, TUCSON) SCISOFT (IRAF + DS9 + ...) MAC http://scisoftosx.dyndns.org/ LINUX http://www.eso.org/sci/software/scisoft/ P. OCVIRK - COURS DE REDUCTION DES DONNEES - M2 OBSERVATOIRE ASTRONOMIQUE DE STRASBOURG IRAF UBUNTU o DEPENDANCES o IRAF o CONFIG IRAF P. OCVIRK - COURS DE REDUCTION DES DONNEES - M2 OBSERVATOIRE ASTRONOMIQUE DE STRASBOURG INSTALLATION IRAF UBUNTU OCTOBRE 2012 Dependances (a installer avant iraf) o C’est peut-etre la premiere fois que vous devez installer des dependances. Vous aurez peut-etre l’impression de ne pas tout comprendre. Peu importe!! Le but c’est d’avoir iraf qui tourne! o Certaines sont deja presentes. Pour tester leur existence sur votre systeme: locate <ma dependance> o En general elles s’installent grace a apt-get: sudo apt-get install <ma dependance> o En cas de probleme avec une dependance, google est votre ami: faire une recherche “install SDL_image ubuntu” par exemple o Toutes les commandes de cette aide se lancent dans un terminal (ou xterm), la plupart (mais pas toutes!!) en mode super-user. Elles debutent alors par sudo (super-user do). P. OCVIRK - COURS DE REDUCTION DES DONNEES - M2 OBSERVATOIRE ASTRONOMIQUE DE STRASBOURG INSTALLATION IRAF UBUNTU OCTOBRE 2012 Dependances 1 o csh: sudo apt-get install csh o tcsh: sudo apt-get install tcsh o emacs (editeur de textes): sudo apt-get install emacs o SDL_image, SDL_ttf, libgfortran: deja installees? (me contacter si elles n’apparaissent pas avec un locate) P. OCVIRK - COURS DE REDUCTION DES DONNEES - M2 OBSERVATOIRE ASTRONOMIQUE DE STRASBOURG INSTALLATION IRAF UBUNTU OCTOBRE 2012 Dependances 2: le cas particuler de compat-libf2c-34. -
Debian Med Integrated Software Environment for All Medical Applications
Debian Med Integrated software environment for all medical applications Andreas Tille 27. February 2013 When people hear for the first time the term ‘Debian Med’ there are usually two kinds of misconceptions. Let us dispel these in advance, so as to clarify subsequent discussion of the project. People familiar with Debian as a large distribution of Free Software usually imag- ine Debian Med to be some kind of customised derivative of Debian tailored for use in a medical environment. Astonishingly, the idea that such customisation can be done entirely within Debian itself is not well known and the technical term Debian Pure Blend seems to be sufficiently unknown outside of the Debian milieu that many people fail to appreciate the concept correctly. There are no separate repositories like Personal Package Archives (PPA) as introduced by Ubuntu for additional software not belong- ing to the official distribution or something like that – a Debian Pure Blend (as the term ’pure’ implies) is Debian itself and if you have received Debian you have full De- bian Med at your disposal. There are other Blends inside Debian like Debian Science, Debian Edu, Debian GIS and others. People working in the health care professions sometimes acquire another miscon- ception about Debian Med, namely that Debian Med is some kind of software primarily dedicated to managing a doctor’s practice. Sometimes people even assume that people assume the Debian Med team actually develops this software. However, the truth about the Debian Med team is that we are a group of Debian developers hard at work incor- porating existing medical software right into the Debian distribution. -
A Zahlensysteme
A Zahlensysteme Außer dem Dezimalsystem sind das Dual-,dasOktal- und das Hexadezimalsystem gebräuchlich. Ferner spielt das Binär codierte Dezimalsystem (BCD) bei manchen Anwendungen eine Rolle. Bei diesem sind die einzelnen Dezimalstellen für sich dual dargestellt. Die folgende Tabelle enthält die Werte von 0 bis dezimal 255. Be- quemlichkeitshalber sind auch die zugeordneten ASCII-Zeichen aufgeführt. dezimal dual oktal hex BCD ASCII 0 0 0 0 0 nul 11111soh 2102210stx 3113311etx 4 100 4 4 100 eot 5 101 5 5 101 enq 6 110 6 6 110 ack 7 111 7 7 111 bel 8 1000 10 8 1000 bs 9 1001 11 9 1001 ht 10 1010 12 a 1.0 lf 11 101 13 b 1.1 vt 12 1100 14 c 1.10 ff 13 1101 15 d 1.11 cr 14 1110 16 e 1.100 so 15 1111 17 f 1.101 si 16 10000 20 10 1.110 dle 17 10001 21 11 1.111 dc1 18 10010 22 12 1.1000 dc2 19 10011 23 13 1.1001 dc3 20 10100 24 14 10.0 dc4 21 10101 25 15 10.1 nak 22 10110 26 16 10.10 syn 430 A Zahlensysteme 23 10111 27 17 10.11 etb 24 11000 30 18 10.100 can 25 11001 31 19 10.101 em 26 11010 32 1a 10.110 sub 27 11011 33 1b 10.111 esc 28 11100 34 1c 10.1000 fs 29 11101 35 1d 10.1001 gs 30 11110 36 1e 11.0 rs 31 11111 37 1f 11.1 us 32 100000 40 20 11.10 space 33 100001 41 21 11.11 ! 34 100010 42 22 11.100 ” 35 100011 43 23 11.101 # 36 100100 44 24 11.110 $ 37 100101 45 25 11.111 % 38 100110 46 26 11.1000 & 39 100111 47 27 11.1001 ’ 40 101000 50 28 100.0 ( 41 101001 51 29 100.1 ) 42 101010 52 2a 100.10 * 43 101011 53 2b 100.11 + 44 101100 54 2c 100.100 , 45 101101 55 2d 100.101 - 46 101110 56 2e 100.110 . -
The Open Organization Guide for Educators
The Open Organization Guide for Educators The Open Organization Guide for Educators Transformative teaching and learning for a rapidly changing world Contributing authors (in alphabetical order) Amarachi Achonu Mukkai Krishnamoorthy Beth Anderson Gina Likins Bryan Behrenshausen Clara May Maxwell Bushong Ian McDermott Carolyn Butler Dan McGuire Curtis A. Carver Christopher McHale Aria F. Chernik Race MoChridhe Susie Choi Steven Ovadia Dipankar Dasgupta Ben Owens Heidi Ellis David Preston Denise Ferebee Rahul Razdan David Goldschmidt Charlie Reisinger Adam Haigler Justin Sherman Jim Hall Wesley Turner Tanner Johnson Shobha Tyagi Marcus Kelly Jim Whitehurst Ryan Williams Copyright Copyright © 2019 Red Hat, Inc. All written content, as well as the cover image, licensed under a Creative Commons Attribu- tion-ShareAlike 4.0 International License.1 Amarachi Achonu's "Making computer science curricula as adaptable as our code" originally appeared at https://opensource.- com/open-organization/19/4/adaptable-curricula-computer-science Beth Anderson's "An open process for discovering our school's core values" originally appeared at https://opensource.- com/open-organization/16/6/opening-discover-education-centers- core-values. Curtis A. Carver's "Crowdsourcing our way to a campus IT plan" originally appeared at https://opensource.com/open-organiza- tion/17/10/uab-100-wins-through-crowdsourcing. Brandon Dixon and Randall Joyce's "The most valuable cy- bersecurity education is an open one" originally appeared at https://opensource.com/open-organization/19/8/open-cybersecu- rity-education. Heidi Ellis' "What happened when I let my students fork the syllabus" originally appeared at https://opensource.com/open-orga- nization/18/11/making-course-syllabus-open. -
Comparison of Open-Source Electronic Health Record Systems Based on Functional and User Performance Criteria
Original Article Healthc Inform Res. 2019 April;25(2):89-98. https://doi.org/10.4258/hir.2019.25.2.89 pISSN 2093-3681 • eISSN 2093-369X Comparison of Open-Source Electronic Health Record Systems Based on Functional and User Performance Criteria Saptarshi Purkayastha1, Roshini Allam1, Pallavi Maity1, Judy W. Gichoya2 1Department of BioHealth Informatics, Indiana University–Purdue University Indianapolis, Indianapolis, IN, USA 2Dotter Institute, Oregon Health and Science University, Portland, OR, USA Objectives: Open-source Electronic Health Record (EHR) systems have gained importance. The main aim of our research is to guide organizational choice by comparing the features, functionality, and user-facing system performance of the five most popular open-source EHR systems. Methods: We performed qualitative content analysis with a directed approach on recently published literature (2012–2017) to develop an integrated set of criteria to compare the EHR systems. The functional criteria are an integration of the literature, meaningful use criteria, and the Institute of Medicine’s functional requirements of EHR, whereas the user-facing system performance is based on the time required to perform basic tasks within the EHR system. Results: Based on the Alexa web ranking and Google Trends, the five most popular EHR systems at the time of our study were OSHERA VistA, GNU Health, the Open Medical Record System (OpenMRS), Open Electronic Medical Record (OpenEMR), and OpenEHR. We also found the trends in popularity of the EHR systems and the locations where they were more popular than others. OpenEMR met all the 32 functional criteria, OSHERA VistA met 28, OpenMRS met 12 fully and 11 partially, OpenEHR-based EHR met 10 fully and 3 partially, and GNU Health met the least with only 10 criteria fully and 2 partially. -
Debian 1 Debian
Debian 1 Debian Debian Part of the Unix-like family Debian 7.0 (Wheezy) with GNOME 3 Company / developer Debian Project Working state Current Source model Open-source Initial release September 15, 1993 [1] Latest release 7.5 (Wheezy) (April 26, 2014) [±] [2] Latest preview 8.0 (Jessie) (perpetual beta) [±] Available in 73 languages Update method APT (several front-ends available) Package manager dpkg Supported platforms IA-32, x86-64, PowerPC, SPARC, ARM, MIPS, S390 Kernel type Monolithic: Linux, kFreeBSD Micro: Hurd (unofficial) Userland GNU Default user interface GNOME License Free software (mainly GPL). Proprietary software in a non-default area. [3] Official website www.debian.org Debian (/ˈdɛbiən/) is an operating system composed of free software mostly carrying the GNU General Public License, and developed by an Internet collaboration of volunteers aligned with the Debian Project. It is one of the most popular Linux distributions for personal computers and network servers, and has been used as a base for other Linux distributions. Debian 2 Debian was announced in 1993 by Ian Murdock, and the first stable release was made in 1996. The development is carried out by a team of volunteers guided by a project leader and three foundational documents. New distributions are updated continually and the next candidate is released after a time-based freeze. As one of the earliest distributions in Linux's history, Debian was envisioned to be developed openly in the spirit of Linux and GNU. This vision drew the attention and support of the Free Software Foundation, who sponsored the project for the first part of its life. -
Electronic Health Record Security Guidance for Low-Resource Settings
Assessment Tool for Electronic Health Record Security Guidance for Low-Resource Settings April 2020 MEASURE Evaluation This publication was produced with the support of the United States Agency for International Development (USAID) under University of North Carolina the terms of MEASURE Evaluation cooperative agreement 123 West Franklin Street, Suite 330 AID-OAA-L-14-00004. MEASURE Evaluation is implemented by the Carolina Population Center, University of North Carolina Chapel Hill, NC 27516 USA at Chapel Hill in partnership with ICF International; John Phone: +1 919-445-9350 Snow, Inc.; Management Sciences for Health; Palladium; [email protected] and Tulane University. Views expressed are not necessarily those of USAID or the United States government. MS-20-195 www.measureevaluation.org ISBN: 978-1-64232-260-6 ACKNOWLEDGMENTS We thank the United States Agency for International Development (USAID) for its support of this work. We’d like to recognize the project management team and the technical support we received from Jason B. Smith, Manish Kumar, and David La’Vell Johnson of MEASURE Evaluation at the University of North Carolina at Chapel Hill (UNC); Herman Tolentino, Steven Yoon, Tadesse Wuhib, Eric-Jan Manders, Daniel Rosen, Carrie Preston, Nathan Volk, and Adebowale Ojo of the United States Centers for Disease Control and Prevention (CDC); Mark DeZalia at the President’s Emergency Plan for AIDS Relief (PEPFAR); and Nega Gebreyesus, Kristen Wares, and Jacob Buehler at USAID. The MEASURE Evaluation project, funded by USAID and PEPFAR, would like to thank the Monitoring and Evaluation Technical Support Program at the Makerere University School of Public Health in Uganda for its cooperation and support in testing this tool and providing valuable feedback and insight. -
Cross-Compiling Linux Kernels on X86 64: a Tutorial on How to Get Started
Cross-compiling Linux Kernels on x86_64: A tutorial on How to Get Started Shuah Khan Senior Linux Kernel Developer – Open Source Group Samsung Research America (Silicon Valley) [email protected] Agenda ● Cross-compile value proposition ● Preparing the system for cross-compiler installation ● Cross-compiler installation steps ● Demo – install arm and arm64 ● Compiling on architectures ● Demo – compile arm and arm64 ● Automating cross-compile testing ● Upstream cross-compile testing activity ● References and Package repositories ● Q&A Cross-compile value proposition ● 30+ architectures supported (several sub-archs) ● Native compile testing requires wide range of test systems – not practical ● Ability to cross-compile non-natively on an widely available architecture helps detect compile errors ● Coupled with emulation environments (e.g: qemu) testing on non-native architectures becomes easier ● Setting up cross-compile environment is the first and necessary step arch/ alpha frv arc microblaze h8300 s390 um arm mips hexagon score x86_64 arm64 mn10300 unicore32 ia64 sh xtensa avr32 openrisc x86 m32r sparc blackfin parisc m68k tile c6x powerpc metag cris Cross-compiler packages ● Ubuntu arm packages (12.10 or later) – gcc-arm-linux-gnueabi – gcc-arm-linux-gnueabihf ● Ubuntu arm64 packages (13.04 or later) – use arm64 repo for older Ubuntu releases. – gcc-4.7-aarch64-linux-gnu ● Ubuntu keeps adding support for compilers. Search Ubuntu repository for packages. Cross-compiler packages ● Embedded Debian Project is a good resource for alpha, mips, -
A Debian Pure Blend for Astronomy and Astrophysics
The Debian Astro project A Debian Pure Blend for astronomy and astrophysics Ole Streicher [email protected] Zeuthen, 2018-02-13 Ole Streicher (AIP Potsdam) The Debian Astro project Zeuthen, 2018-02-13 1 / 23 Debian GNU/Linux Free Linux based operating system One of the oldest distributions (founded 1993) Free as in \Free Speech" Base: Social Contract; Debian Free Software Guidelines > 50:000 software packages > 1:000 official developers Base for many derivatives: Ubuntu, Mint, ... Current stable version: Debian 9 (Stretch), since June 2017 Ole Streicher (AIP Potsdam) The Debian Astro project Zeuthen, 2018-02-13 2 / 23 The Debian Astro Pure Blend Blended tea: a combination of different kinds of teas to guarantee consistent quality (Wikipedia) Method to organize Debian astronomy packages currently 294 packages, (more in preparation) 19 metapackages Web page, \tasks" pages Handle citations, ASCL entries Completely integrated into Debian (Pure) First release with Debian Stretch (June 2017) Ole Streicher (AIP Potsdam) The Debian Astro project Zeuthen, 2018-02-13 3 / 23 Debian Pure Blends Debian Astro - Astronomy and astrophysics Debian GIS - Geographical Information Systems DebiChem - Chemistry Debian Med - Strong focus on Microbiology NeuroDebian - Neuroscience Debian Science - \Umbrella" blend for sciences Debian Edu - Education of all kind Debian Games, Debian Junior, Debian Multimedia, Hamradio, ... Ole Streicher (AIP Potsdam) The Debian Astro project Zeuthen, 2018-02-13 4 / 23 History of Debian Astro First packages: saoimage (1999), cfitsio