Pathobiology of Fungal Infections of the Central Nervous System with Special Reference to the Indian Scenario
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NEWSLETTER 2017•Issue 2
NEWSLETTER 2017•Issue 2 page 2 Deep dermatophytosis page 4 Deep dermatophytosis: A case report page 5 Fereydounia khargensis: A new and uncommon opportunistic yeast from Malaysia page 6 Itraconazole: A quick guide for clinicians Visit us at AFWGonline.com and sign up for updates Editors’ welcome Dr Mitzi M Chua Dr Ariya Chindamporn Adult Infectious Disease Specialist Associate Professor Associate Professor Department of Microbiology Department of Microbiology & Parasitology Faculty of Medicine Cebu Institute of Medicine Chulalongkorn University Cebu City, Philippines Bangkok, Thailand This year we celebrate the 8th year of AFWG: 8 years of pursuing excellence in medical mycology throughout the region; 8 years of sharing expertise and encouraging like-minded professionals to join us in our mission. We are happy to once again share some educational articles from our experts and keep you updated on our activities through this issue. Deep dermatophytosis may be a rare skin infection, but late diagnosis or ineffective treatment may lead to mortality in some cases. This issue of the AFWG newsletter focuses on this fungal infection that usually occurs in immunosuppressed individuals. Dr Pei-Lun Sun takes us through the basics of deep dermatophytosis, presenting data from published studies, and emphasizes the importance of treating superficial tinea infections before starting immunosuppressive treatment. Dr Ruojun Wang and Professor Ruoyu Li share a case of deep dermatophytosis caused by Trichophyton rubrum. In this issue, we also feature a new fungus, Fereydounia khargensis, first discovered in 2014. Ms Ratna Mohd Tap and Dr Fairuz Amran present 2 cases of F. khargensis and show how PCR sequencing is crucial to correct identification of this uncommon yeast. -
Fungal Evolution: Major Ecological Adaptations and Evolutionary Transitions
Biol. Rev. (2019), pp. 000–000. 1 doi: 10.1111/brv.12510 Fungal evolution: major ecological adaptations and evolutionary transitions Miguel A. Naranjo-Ortiz1 and Toni Gabaldon´ 1,2,3∗ 1Department of Genomics and Bioinformatics, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain 2 Department of Experimental and Health Sciences, Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain 3ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain ABSTRACT Fungi are a highly diverse group of heterotrophic eukaryotes characterized by the absence of phagotrophy and the presence of a chitinous cell wall. While unicellular fungi are far from rare, part of the evolutionary success of the group resides in their ability to grow indefinitely as a cylindrical multinucleated cell (hypha). Armed with these morphological traits and with an extremely high metabolical diversity, fungi have conquered numerous ecological niches and have shaped a whole world of interactions with other living organisms. Herein we survey the main evolutionary and ecological processes that have guided fungal diversity. We will first review the ecology and evolution of the zoosporic lineages and the process of terrestrialization, as one of the major evolutionary transitions in this kingdom. Several plausible scenarios have been proposed for fungal terrestralization and we here propose a new scenario, which considers icy environments as a transitory niche between water and emerged land. We then focus on exploring the main ecological relationships of Fungi with other organisms (other fungi, protozoans, animals and plants), as well as the origin of adaptations to certain specialized ecological niches within the group (lichens, black fungi and yeasts). -
Arthropod-Pathogenic Entomophthorales from Switzerland
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Sydowia Jahr/Year: 2007 Band/Volume: 59 Autor(en)/Author(s): Keller Siegfried Artikel/Article: Arthropod-pathogenic Entomophthorales from Switzerland. III. First additions. 75-113 ©Verlag Ferdinand Berger & Söhne Ges.m.b.H., Horn, Austria, download unter www.biologiezentrum.at Arthropod-pathogenic Entomophthorales from Switzerland. III. First additions Siegfried Keller Federal Research Station Agroscope Reckenholz-TaÈnikon ART, Reckenholzstrasse 191, CH-8046 Zurich, Switzerland Keller S. (2007) Arthropod-pathogenic Entomophthorales from Switzerland. III. First additions. ± Sydowia 59 (1): 75±113. Twenty-nine species of arthropod-pathogenic Entomophthorales new to Switzerland are described. Nine are described as new species, namely Batkoa hydrophila from Plecoptera, Conidiobolus caecilius from Psocoptera, Entomophaga antochae from Limoniidae (Diptera), E. thuricensis from Cicadellidae (Homo- ptera), Erynia fluvialis from midges (Diptera), E. tumefacta from Muscidae (Dip- tera), Eryniopsis rhagonidis from Rhagionidae (Diptera), Pandora longissima from Limoniidae (Diptera) and Strongwellsea pratensis from Muscidae (Diptera). Pan- dora americana, P. sciarae, Zoophthora aphrophorae and Z. rhagonycharum are new combinations. Eleven species are first records since the original description. The list of species recorded from Switzerland amounts to 90 species representing 38% of the world-wide known species of arthropod-pathogenic Entomophthorales. Part I of this monograph (Keller 1987) treated the genera Con- idiobolus, Entomophaga [including the species later transferred on to the new genus Batkoa Humber (1989)], and Entomophthora. Part II (Keller 1991) treated the genera Erynia sensu lato (now subdivided into the genera Erynia, Furia and Pandora), Eryniopsis, Neozygites, Zoophthora and Tarichium. So far 51 species including 8new ones have been listed. -
Identification of Culture-Negative Fungi in Blood and Respiratory Samples
IDENTIFICATION OF CULTURE-NEGATIVE FUNGI IN BLOOD AND RESPIRATORY SAMPLES Farida P. Sidiq A Dissertation Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 2014 Committee: Scott O. Rogers, Advisor W. Robert Midden Graduate Faculty Representative George Bullerjahn Raymond Larsen Vipaporn Phuntumart © 2014 Farida P. Sidiq All Rights Reserved iii ABSTRACT Scott O. Rogers, Advisor Fungi were identified as early as the 1800’s as potential human pathogens, and have since been shown as being capable of causing disease in both immunocompetent and immunocompromised people. Clinical diagnosis of fungal infections has largely relied upon traditional microbiological culture techniques and examination of positive cultures and histopathological specimens utilizing microscopy. The first has been shown to be highly insensitive and prone to result in frequent false negatives. This is complicated by atypical phenotypes and organisms that are morphologically indistinguishable in tissues. Delays in diagnosis of fungal infections and inaccurate identification of infectious organisms contribute to increased morbidity and mortality in immunocompromised patients who exhibit increased vulnerability to opportunistic infection by normally nonpathogenic fungi. In this study we have retrospectively examined one-hundred culture negative whole blood samples and one-hundred culture negative respiratory samples obtained from the clinical microbiology lab at the University of Michigan Hospital in Ann Arbor, MI. Samples were obtained from randomized, heterogeneous patient populations collected between 2005 and 2006. Specimens were tested utilizing cetyltrimethylammonium bromide (CTAB) DNA extraction and polymerase chain reaction amplification of internal transcribed spacer (ITS) regions of ribosomal DNA utilizing panfungal ITS primers. -
Entomopathogenic Fungal Identification
Entomopathogenic Fungal Identification updated November 2005 RICHARD A. HUMBER USDA-ARS Plant Protection Research Unit US Plant, Soil & Nutrition Laboratory Tower Road Ithaca, NY 14853-2901 Phone: 607-255-1276 / Fax: 607-255-1132 Email: Richard [email protected] or [email protected] http://arsef.fpsnl.cornell.edu Originally prepared for a workshop jointly sponsored by the American Phytopathological Society and Entomological Society of America Las Vegas, Nevada – 7 November 1998 - 2 - CONTENTS Foreword ......................................................................................................... 4 Important Techniques for Working with Entomopathogenic Fungi Compound micrscopes and Köhler illumination ................................... 5 Slide mounts ........................................................................................ 5 Key to Major Genera of Fungal Entomopathogens ........................................... 7 Brief Glossary of Mycological Terms ................................................................. 12 Fungal Genera Zygomycota: Entomophthorales Batkoa (Entomophthoraceae) ............................................................... 13 Conidiobolus (Ancylistaceae) .............................................................. 14 Entomophaga (Entomophthoraceae) .................................................. 15 Entomophthora (Entomophthoraceae) ............................................... 16 Neozygites (Neozygitaceae) ................................................................. 17 Pandora -
Fungal-Bacterial Interactions in Health and Disease
pathogens Review Fungal-Bacterial Interactions in Health and Disease 1, 1, 1,2 1,2,3 Wibke Krüger y, Sarah Vielreicher y, Mario Kapitan , Ilse D. Jacobsen and Maria Joanna Niemiec 1,2,* 1 Leibniz Institute for Natural Product Research and Infection Biology—Hans Knöll Institute, Jena 07745, Germany; [email protected] (W.K.); [email protected] (S.V.); [email protected] (M.K.); [email protected] (I.D.J.) 2 Center for Sepsis Control and Care, Jena 07747, Germany 3 Institute of Microbiology, Friedrich Schiller University, Jena 07743, Germany * Correspondence: [email protected]; Tel.: +49-3641-532-1454 These authors contributed equally to this work. y Received: 22 February 2019; Accepted: 16 May 2019; Published: 21 May 2019 Abstract: Fungi and bacteria encounter each other in various niches of the human body. There, they interact directly with one another or indirectly via the host response. In both cases, interactions can affect host health and disease. In the present review, we summarized current knowledge on fungal-bacterial interactions during their commensal and pathogenic lifestyle. We focus on distinct mucosal niches: the oral cavity, lung, gut, and vagina. In addition, we describe interactions during bloodstream and wound infections and the possible consequences for the human host. Keywords: mycobiome; microbiome; cross-kingdom interactions; polymicrobial; commensals; synergism; antagonism; mixed infections 1. Introduction 1.1. Origins of Microbiota Research Fungi and bacteria are found on all mucosal epithelial surfaces of the human body. After their discovery in the 19th century, for a long time the presence of microbes was thought to be associated mostly with disease. -
Synthesis and Assembly of Fungal Melanin
Appl Microbiol Biotechnol (2012) 93:931–940 DOI 10.1007/s00253-011-3777-2 MINI-REVIEW Synthesis and assembly of fungal melanin Helene C. Eisenman & Arturo Casadevall Received: 23 September 2011 /Revised: 17 November 2011 /Accepted: 20 November 2011 /Published online: 16 December 2011 # Springer-Verlag 2011 Abstract Melanin is a unique pigment with myriad Introduction functions that is found in all biological kingdoms. It is multifunctional, providing defense against environmental Many fungal species produce melanin, a biologically impor- stresses such as ultraviolet (UV) light, oxidizing agents tant pigment. Melanin is found throughout nature, often pro- and ionizing radiation. Melanin contributes to the ability viding a protective role such as from ultraviolet radiation. of fungi to survive in harsh environments. In addition, it Despite its importance and ubiquity, there are many funda- plays a role in fungal pathogenesis. Melanin is an mental questions unanswered regarding the pigment such as amorphous polymer that is produced by one of two the details of its chemical structure. This is due to the fact that synthetic pathways. Fungi may synthesize melanin from melanin is insoluble and, therefore, cannot be studied by endogenous substrate via a 1,8-dihydroxynaphthalene standard biochemical techniques. Melanin production by fun- (DHN) intermediate. Alternatively, some fungi produce gi contributes to the virulence of pathogens of humans as well melanin from L-3,4-dihydroxyphenylalanine (L-dopa). as those of food crops. The pigment enhances fungal resis- The detailed chemical structure of melanin is not tance to environmental damage as well. For example, known. However, microscopic studies show that it has radiation-resistant melanized fungi can survive harsh climates an overall granular structure. -
Davis Overview of Fungi and Diseases 2014
JHH ID Tutorials Dr Josh Davis December 2014 MYCOLOGY OVERVIEW 1. OVERVIEW. It is estimated that there are 1.5 million extant species of fungi on Earth, of which 60,000 have been described/named; of these only approximately 400 species have ever been described to cause disease in humans and only approximately 20 do so with any frequency. Many others are plant pathogens or symbionts. At least 13,500 fungal species form lichens, symbiotic partnerships between fungi (usually ascomycota) and photosynthetic microbes (eg. algae, cyanobacteria). 2. CLASSIFICATION. There are several confusing/overlapping classifications systems for fungi. 2.1 Biological Kingdom FUNGI; Phyla: 2.1.1 Phylum Zygomycota – Agents of zygomycosis, “mucormycosis”. Most primitive fungi. Broad, ribbon-like hyphae, no septae. Generally grow fast on agar (“lid-lifters”). 2.1.1.1 Order Mucorales – eg. Rhizopus, Rhizomucor, Mucor, Saskanaea, Cuninghamella 2.1.1.2 Order Entomophthorales – Basidiobolus, Canidiobolus 2.1.2 Phylum Basidiomycota – Mushrooms, jelly fungi, smuts, rusts, stinkhorns . and the teleomorph of cryptococcus! 2.1.3 Phylum Ascomycota – e.g. Pseudoallescheria, Curvularia, Saccharomyces. 2.1.4 Phylum Deuteromycota, or Fungi Imperfecti. Not a true phylum. Contains asexual (“imperfect”) forms of fungi (anamorphs), most of which have not had a sexual form described. Most human pathogens are in this group – eg: Aspergillus, Candida, Cryptococcus, Scedosporium, Alternaria, Trichophyton, Cladosporium etc. etc. 1. Sporotrix at 37 and 25 degrees; 2. Aspergillus fumigatus, niger, terreus, flavus (L to R); 3. Candida albicans 2.2 Morphological 2.2.1 Broad classification - Yeasts, Moulds and Dimorphic Fungi 2.2.1.1 Yeasts are single-celled organisms which reproduce by budding and grow as smooth colonies on agar. -
Entomophthorales
USDA-ARS Collection of Entomopathogenic Fungal Cultures Entomophthorales Emerging Pests and Pathogens Research Unit L. A. Castrillo (Acting Curator) Robert W. Holley Center for Agriculture & Health June 2020 539 Tower Road Fully Indexed Ithaca, NY 14853 Includes 1901 isolates ARSEF COLLECTION STAFF Louela A. Castrillo, Ph.D. Acting Curator and Insect Pathologist/Mycologist [email protected] (alt. email: [email protected]) phone: [+1] 607 255-7008 Micheal M. Wheeler Biological Technician [email protected] (alt. e-mail: [email protected]) phone: [+1] 607 255-1274 USDA-ARS Emerging Pests and Pathogens Research Unit Robert W. Holley Center for Agriculture & Health 538 Tower Road Ithaca, NY 14853-2901 USA Front cover: Rhagionid fly infected with Pandora blunckii. Specimen collected by Eleanor Spence in Ithaca, NY, in June 2019. Photograph and fungus identification by LA Castrillo. i New nomenclatural rules bring new challenges, and new taxonomic revisions for entomopathogenic fungi Richard A. Humber Insect Mycologist and Curator, ARSEF (Retired August, 2017) February 2014 (updated June 2020)* The previous (2007) version of this introductory material for ARSEF catalogs sought to explain some of the phylogenetically-based rationale for major changes to the taxonomy of many key fungal entomopathogens, especially those involving some key conidial and sexual genera of the ascomycete order Hypocreales. Phylogenetic revisions of the taxonomies of entomopathogenic fungi continued to appear, and the results of these revisions are reflected -
Appressorium: the Breakthrough in Dikarya
Journal of Fungi Article Appressorium: The Breakthrough in Dikarya Alexander Demoor, Philippe Silar and Sylvain Brun * Laboratoire Interdisciplinaire des Energies de Demain, LIED-UMR 8236, Université de Paris, 5 rue Marie-Andree Lagroua, 75205 Paris, France * Correspondence: [email protected] Received: 28 May 2019; Accepted: 30 July 2019; Published: 3 August 2019 Abstract: Phytopathogenic and mycorrhizal fungi often penetrate living hosts by using appressoria and related structures. The differentiation of similar structures in saprotrophic fungi to penetrate dead plant biomass has seldom been investigated and has been reported only in the model fungus Podospora anserina. Here, we report on the ability of many saprotrophs from a large range of taxa to produce appressoria on cellophane. Most Ascomycota and Basidiomycota were able to form appressoria. In contrast, none of the three investigated Mucoromycotina was able to differentiate such structures. The ability of filamentous fungi to differentiate appressoria no longer belongs solely to pathogenic or mutualistic fungi, and this raises the question of the evolutionary origin of the appressorium in Eumycetes. Keywords: appressorium; infection cushion; penetration; biomass degradation; saprotrophic fungi; Eumycetes; cellophane 1. Introduction Accessing and degrading biomass are crucial processes for heterotrophic organisms such as fungi. Nowadays, fungi are famous biodegraders that are able to produce an exhaustive set of biomass- degrading enzymes, the Carbohydrate Active enzymes (CAZymes) allowing the potent degradation of complex sugars such as cellulose, hemicellulose, and the more recalcitrant lignin polymer [1]. Because of their importance for industry and biofuel production in particular, many scientific programs worldwide aim at mining this collection of enzymes in fungal genomes and at understanding fungal lignocellulosic plant biomass degradation. -
Polyketides, Toxins and Pigments in Penicillium Marneffei
Toxins 2015, 7, 4421-4436; doi:10.3390/toxins7114421 OPEN ACCESS toxins ISSN 2072-6651 www.mdpi.com/journal/toxins Review Polyketides, Toxins and Pigments in Penicillium marneffei Emily W. T. Tam 1, Chi-Ching Tsang 1, Susanna K. P. Lau 1,2,3,4,* and Patrick C. Y. Woo 1,2,3,4,* 1 Department of Microbiology, The University of Hong Kong, Pokfulam, Hong Kong; E-Mails: [email protected] (E.W.T.T.); [email protected] (C.-C.T.) 2 State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong, Pokfulam, Hong Kong 3 Research Centre of Infection and Immunology, The University of Hong Kong, Pokfulam, Hong Kong 4 Carol Yu Centre for Infection, The University of Hong Kong, Pokfulam, Hong Kong * Authors to whom correspondence should be addressed; E-Mails: [email protected] (S.K.P.L.); [email protected] (P.C.Y.W.); Tel.: +852-2255-4892 (S.K.P.L. & P.C.Y.W.); Fax: +852-2855-1241 (S.K.P.L. & P.C.Y.W.). Academic Editor: Jiujiang Yu Received: 18 September 2015 / Accepted: 22 October 2015 / Published: 30 October 2015 Abstract: Penicillium marneffei (synonym: Talaromyces marneffei) is the most important pathogenic thermally dimorphic fungus in China and Southeastern Asia. The HIV/AIDS pandemic, particularly in China and other Southeast Asian countries, has led to the emergence of P. marneffei infection as an important AIDS-defining condition. Recently, we published the genome sequence of P. marneffei. In the P. marneffei genome, 23 polyketide synthase genes and two polyketide synthase-non-ribosomal peptide synthase hybrid genes were identified. -
Proteomic Analysis of the Secretions of Pseudallescheria Boydii, A
ARTICLE pubs.acs.org/jpr Proteomic Analysis of the Secretions of Pseudallescheria boydii, a Human Fungal Pathogen with Unknown Genome Bianca Alc^antara da Silva,†,O Catia Lacerda Sodre,†,‡,O Ana Luiza Souza-Gonc-alves,† Ana Carolina Aor,† Lucimar Ferreira Kneipp,Δ Beatriz Bastos Fonseca,§ Sonia Rozental,§ Maria Teresa Villela Romanos,^ Mauro Sola-Penna,|| Jonas Perales,# Dario Eluan Kalume,‡ and Andre Luis Souza dos Santos*,†,Φ † Laboratorio de Estudos Integrados em Bioquímica Microbiana, Departamento de Microbiologia Geral, Instituto de Microbiologia Paulo de Goes (IMPPG), Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil ‡ Laboratorio Interdisciplinar de Pesquisas Medicas, Instituto Oswaldo Cruz (IOC), Fundac-~ao Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Brazil Δ Laboratorio de Taxonomia, Bioquímica e Bioprospecc-~ao de Fungos, IOC, FIOCRUZ, Rio de Janeiro, Brazil § Laboratorio de Biologia Celular de Fungos, Instituto de Biofísica Carlos Chagas Filho (IBCCF), UFRJ, Rio de Janeiro, Brazil ^ Laboratorio Experimental de Drogas Antivirais e Citotoxicas, Departamento de Virologia, IMPPG, UFRJ, Rio de Janeiro, Brazil Laborat) orio de Enzomologia e Controle do Metabolismo (LabECoM), Departamento de Farmacos, Faculdade de Farmacia, UFRJ, Rio de Janeiro, Brazil #Laboratorio de Toxinologia, IOC, FIOCRUZ, Rio de Janeiro, Brazil Φ Programa de Pos-Graduac-~ao em Bioquímica, Instituto de Química, UFRJ, Rio de Janeiro, RJ, Brazil ABSTRACT: Pseudallescheria boydii is a filamentous fungus that causes a wide array of infections that can affect practically all the organs of the human body. The treatment of pseudallescheriosis is difficult since P. boydii exhibits intrinsic resistance to the majority of antifungal drugs used in the clinic and the virulence attributes expressed by this fungus are unknown.