Diagnostic Tables for the Common Medical Bacteria by S
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MINIATURIZED TECHNIQUES for Imvic TESTS1 DANIEL Y
328 ]. Milk Food Technol., Vol. 35, No. 6 (1972) MINIATURIZED TECHNIQUES FOR IMViC TESTS1 DANIEL Y. c. FuNG AND RICHARD D. MILLER Department of Microbiology The Pennsylvania State University University Park 16802 ( Received for publication January 24, 1972) ABsTRACT Indole test Sterile tryptone broth ( Difco) was introduced into the A miniaturized method for performing IMViC tests is pro wells ( 0.2 ml per well) of a series of Microtiter plates; the Downloaded from http://meridian.allenpress.com/jfp/article-pdf/35/6/328/2399137/0022-2747-35_6_328.pdf by guest on 27 September 2021 posed. Twenty-four gram-negative bacterial species and plates were then inoculated, covered, and incubated at 37 C. strains were tested by use of miniaturized and conventional At intervals of 8, 12, and 24 hr, Microtiter plates were re methods; the results were comparable. The miniaturized moved from the incubator for testing. To detect indole pro method effects savingG of time, space, materials, and effort. duction, 2 drops of Kovac reagent were transferred by a The advantages and applications of microbiological Pasteur pipette to each well of the Microtiter plate. A red layer formed on top of the broth in the well indicated a posi~ tests using small volumes of media have been dis tive reaction. Parallel conventional tests for indole produc cussed in detail by Hartman (6). The combination tion, as well as other IMViC tests, were performed according of small volumes of media in Microtiter plates and to the Difm Manual (3), in each species and strain in four multiple inoculation techniques has been used by replicates. -
Technical Report the Vitek Analyser for Routine Bacterial Identification And
316 J Clin Pathol 1998;51:316–323 Technical report J Clin Pathol: first published as 10.1136/jcp.51.4.316 on 1 April 1998. Downloaded from The Vitek analyser for routine bacterial identification and susceptibility testing: protocols, problems, and pitfalls N Shetty, G Hill, G L Ridgway Abstract covered, maintenance and quality control Automated and semiautomated technol- costs, and the presence of a versatile software ogy in microbiology has seen great ad- package. This report describes our experiences vances in recent years. The choice of with the Vitek system (bioMerieux, UK) in the automated equipment for the identifica- one year since its inception into a busy micro- tion and susceptibility testing of bacteria biology diagnostic laboratory in the United in a routine diagnostic laboratory depends Kingdom. It is worth noting that the choice on speed, accuracy, ease of use, and cost and range of antibiotics on susceptibility factors. The Vitek analyser (bioMerieux, testing cards were custom made for the UK) was installed in a busy diagnostic University College London Hospitals teaching hospital laboratory in London. (UCLH). This report describes one year’s experience. Changes to work practice as a result of incorporating the equipment into Identification and susceptibility testing the laboratory, and the advantages and on the Vitek system disadvantages of automation in key areas Identification of microorganisms is accom- are described in detail, together with pos- plished by biochemical methods. A turbido- sible solutions to problems. The Vitek metrically controlled suspension of pure colo- analyser was found to be valuable for the nies in saline is inoculated into identification http://jcp.bmj.com/ speed and accuracy with which results cards. -
Prevalence of Urinary Tract Infection and Antibiotic Resistance Pattern in Pregnant Women, Najran Region, Saudi Arabia
Vol. 13(26), pp. 407-413, August, 2019 DOI: 10.5897/AJMR2019.9084 Article Number: E3F64FA61643 ISSN: 1996-0808 Copyright ©2019 Author(s) retain the copyright of this article African Journal of Microbiology Research http://www.academicjournals.org/AJMR Full Length Research Paper Prevalence of urinary tract infection and antibiotic resistance pattern in pregnant women, Najran region, Saudi Arabia Ali Mohamed Alshabi1*, Majed Saeed Alshahrani2, Saad Ahmed Alkahtani1 and Mohammad Shabib Akhtar1 1Department of Clinical Pharmacy, College of Pharmacy, Najran University, Najran, Saudi Arabia. 2Department of Obstetics and Gyneocology, Faculty of Medicine, Najran University, Najran, Saudi Arabia. Received 25 February, 2019; Accepted August 5, 2019 Urinary Tract Infection (UTI) is one of the commonest infectious disease in pregnancy, and in pregnancy we have very limited number of antibiotics to treat the UTI. This study was conducted on 151 patients who attended the gynecology clinic during the study period. Nineteen UTI proven cases of UTI were studied for prevalence of microorganism and sensitivity pattern against different antibiotics. Among the bacteria isolated, Escherichia coli (73.68%) and Staphylococcus aureus (10.52%) were the most prevalent Gram negative and Gram positive bacteria respectively. To know the resistance pattern of microorganism we used commercially available discs of different antibiotics. Gram negative bacteria showed more resistance as compared to Gram positive one. It is observed that the most effective antibiotic for Gram negative isolates is Ceftriaxone (87.5%), followed by Amoxicillin + Clavulanic acid (81.25%), Amikacin (75%), Cefuroxime (75%), Cefixime (68.75%) and Mezlocillin (62.5%). For the Gram positive bacteria, Ceftriaxone, Amikacin and Amoxicillin + Clavulanic acid were the most effective antimicrobials (100%). -
Time-To-Positivity, Type of Culture Media and Oxidase Test Performed on Positive Blood Culture Vials to Predict Pseudomonas Aeru
Original Nazaret Cobos-Trigueros1 Time-to-positivity, type of culture media and oxidase Yuliya Zboromyrska2 Laura Morata1 test performed on positive blood culture vials to predict Izaskun Alejo2 Cristina De La Calle1 Pseudomonas aeruginosa in patients with Gram-negative Andrea Vergara2 Celia Cardozo1 bacilli bacteraemia 1 Maria P. Arcas 1 1 Department of Infectious Diseases, Hospital Clínic, IDIBAPS, Barcelona University, Barcelona, Spain. Alex Soriano 2Department of Clinical Microbiology, Hospital Clínic, Barcelona University, Barcelona, Spain. Francesc Marco2 Josep Mensa1 Manel Almela2 Jose A. Martinez1 ABSTRACT Tiempo de positividad, tipo de medio de cultivo y prueba de oxidasa realizada en Introduction. The aim of this study was to determine the viales de hemocultivo positivos para predecir usefulness of oxidase test and time-to-positivity (TTP) in aer- Pseudomonas aeruginosa en pacientes con obic and anaerobic blood culture vials to detect the presence bacteriemia por bacilos gramnegativos of Pseudomonas aeruginosa in patients with Gram-negative bacilli (GNB) bacteraemia. RESUMEN Material and methods. TTP was recorded for each aer- obic and anaerobic blood culture vial of monomicrobial bac- Introducción. El objetivo del estudio fue determinar la utili- teraemia due to GNB. Oxidase test was performed in a pellet dad de la prueba de oxidasa y del tiempo de positividad del hemo- of the centrifuged content of the positive blood culture. An cultivo (TPH) para detectar la presencia de Pseudomonas aerugino- algorithm was developed in order to perform the oxidase test sa en pacientes con bacteriemia por bacilos gramnegativos (BGN). efficiently taking into account TTP and type of vial. Material y métodos. Se registró el TPH de cada vial ae- Results. -
Laboratory Diagnosis of Urinary Tract Infections Using Diagnostics Tests in Adult Patients
International Journal of Research in Medical Sciences Akmal Hasan SK et al. Int J Res Med Sci. 2014 May;2(2):415-421 www.msjonline.org pISSN 2320-6071 | eISSN 2320-6012 DOI: 10.5455/2320-6012.ijrms20140508 Research Article Laboratory diagnosis of urinary tract infections using diagnostics tests in adult patients Akmal Hasan SK1*, Naveen Kumar T2, Radha Kishan N3, Neetha K3 1Department of Medical Microbiology, Mamata Medical College, Khammam, Andhra Pradesh, India 2Department of Pharmacology, Apollo Institute of Medical Sciences and Research, Hyderabad, Andhra Pradesh, India 3 Department of Biochemistry, Apollo Institute of Medical Sciences and Research, Hyderabad, Andhra Pradesh, India Received: 26 December 2013 Accepted: 07 January 2014 *Correspondence: Dr. Akmal Hasan SK, E-mail: [email protected] © 2014 Akmal Hasan SK et al. This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. ABSTRACT Background: The primary aim of this study was to evaluate laboratory diagnosis of urinary tract infection using diagnostics tests in adult patients. Methods: Among the diagnostic tests, urinalysis is useful mainly for excluding bacteriuria. For isolation of pathogenic bacteria semiquantitative culture techniques was used and biochemical tests were done to differentiate Gram +ve and Gram –ve bacteria. Results: The incidence of pathogenic infection caused by Escherichia coli accounts for 216 cases (60%) followed by Pseudomonas, Staphylococcus aureus and Klebsiella. Conclusion: Physicians should distinguish urinary tract infections caused by different organisms for an effective treatment and appropriate clinical information gives clues for better diagnostic evaluation and their susceptibility to antimicrobial agents as well addressing host factors that contribute to the occurrence of infection. -
New Methods for Pathogens : a Revlew Daniel Y
234 NEW METHODS FOR PATHOGENS : A REVLEW DANIEL Y. C. FUNG The Pennsylvania State University Intr ductioii Interests in new methods for identification of bacterial pathogens have increased greatly in recent years due to the awareness of, the need for, and the potential of rapid methods and automation in Micro- biology. In 1971 a report by the U .So National Institute of General Medical Sciences presented the status of mechanization and automation in the clinical laboratory; autcnnation in microbiology was one of the topics reviewed (Kinney, 19-71). Richardson (1972) summttrized the developments of automation in the dairy Laboratories. These topics have been discussed in detail in the International Symposium on Rapid Methods and Automation in Microbiology first held L~IStockholm, Sweden, 1973, and again in Cambridge University, England, 1976. Another symposium was held in Kiel, Germny, 1974 with the title Automation of Microbio1ogr;ical Food Analysis. TheIn proceedings of the First International Symposium were published in two volumes : Automation in Microbiology and Innrmnolom (Heden and Illeni, 1975a) and New Approaches to the Identification of Microorganisms (Heden and Illeni, 1975b). The purpose of this article is to summarize the highlights of some automated microbiological tests and rapid methods relevant to the food industry. Hopefully some of these methods could be adapted and used routinely by the food industry. New Approaches and Automation in Microbioloa Generally the approach to developing new nethods for pathogens involved either a search for new ideas and related instrument develop- ment or improvement of existing bacteriological methods. The impetus for the development of new ideas and instruments mbly comes from clinical needs for rapid detection of organisms and antibiotic sensitivity testing. -
Source : Microbiology by Pelczar, Prescott Et Al Microbiology, Microbiology of Water
Source : Microbiology by Pelczar, Prescott et al Microbiology, Microbiology of water Water - very essential factor needed by man (used for cooking, drinking, etc.). -open and widely accessible, making it susceptible to contamination by chemicals and bacterial pathogens. -once contaminated, it would be harmful for human consumption. Water Borne Diseases Water-borne diseases are any illness caused by drinking water contaminated by human or animal faeces, which contain pathogenic microorganisms. The germs in the faeces can cause the diseases by even slight contact and transfer. Waterborne microbial pathogens Microbes in water include: – Bacteria – Virus – Protozoa – Helmiths – Spirochete – Rickettsia – Algae A few microbes (pathogens) are capable of causing disease, and may be transmitted by water. Waterborne pathogens Salmonella typhi Escherichia coli Vibrio cholera Pseudomonas aeruginosa Shigella spp. Cryptosporidium Giardia lamblia Norwalkvirus Cryptosporidium parvum Bacterial diseases transmitted through drinking water Disease Causal bacterial agent Cholera Vibrio cholerae Gastroenteritis caused Vibrio parahaemolyticus by vibrios Typhoid fever and Salmonella typhi, Salmonella paratyphi, other serious Salmonella typhimurium salmonellosis Bacillary dysentery Shigella dysenteriae, Shigella flexneri or shigellosis Shigella boydii, Shigella sonnei Acute diarrheas and gastroenteritis Escherichia coli Viral Sources of Waterborne Disease Hepatitis A: inflammation and necrosis of liver Norwalk-type virus: acute gastroenteritis Rotaviruses: -
Enterobacter Massiliensis Sp. Nov
Standards in Genomic Sciences (2013) 7:399-412 DOI:10.4056/sigs.3396830 Non contiguous-finished genome sequence and descrip- tion of Enterobacter massiliensis sp. nov. Jean-Christophe Lagier1, Khalid El Karkouri1, Ajay Kumar Mishra1, Catherine Robert1, Didier Raoult1 and Pierre-Edouard Fournier1* 1Aix-Marseille Université, Faculté de médecine, Marseille, France *Corresponding author: Pierre-Edouard Fournier ([email protected]) Keywords: Enterobacter massiliensis, genome Enterobacter massiliensis strain JC163T sp. nov. is the type strain of E. massiliensis sp. nov., a new species within the genus Enterobacter. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. E. massiliensis is an aerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,922,247 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 55.1% and contains 4,644 protein-coding and 80 RNA genes, including 5 rRNA genes. Introduction Enterobacter massiliensis strain JC163T (= CSUR Enterobacter spp. were isolated from the normal P161 = DSM 26120) is the type strain of E. fecal flora. massiliensis sp. nov. This bacterium is a Gram- negative, aerobic, flagellate, indole-positive bacil- Classification and features lus that was isolated from the feces of a healthy A stool sample was collected from a healthy 16- Senegalese patient in a study aiming at cultivating year-old male Senegalese volunteer patient living all bacterial species in human feces [1]. The cur- in Dielmo (rural village in the Guinean-Sudanian rent classification of prokaryotes, known as zone in Senegal), who was included in a research polyphasic taxonomy, relies on a combination of protocol. -
Description of Gabonibacter Massiliensis Gen. Nov., Sp. Nov., a New Member of the Family Porphyromonadaceae Isolated from the Human Gut Microbiota
Curr Microbiol DOI 10.1007/s00284-016-1137-2 Description of Gabonibacter massiliensis gen. nov., sp. nov., a New Member of the Family Porphyromonadaceae Isolated from the Human Gut Microbiota 1,2 1 3,4 Gae¨l Mourembou • Jaishriram Rathored • Jean Bernard Lekana-Douki • 5 1 1 Ange´lique Ndjoyi-Mbiguino • Saber Khelaifia • Catherine Robert • 1 1,6 1 Nicholas Armstrong • Didier Raoult • Pierre-Edouard Fournier Received: 9 June 2016 / Accepted: 8 September 2016 Ó Springer Science+Business Media New York 2016 Abstract The identification of human-associated bacteria Gabonibacter gen. nov. and the new species G. mas- is very important to control infectious diseases. In recent siliensis gen. nov., sp. nov. years, we diversified culture conditions in a strategy named culturomics, and isolated more than 100 new bacterial Keywords Gabonibacter massiliensis Á Taxonogenomics Á species and/or genera. Using this strategy, strain GM7, a Culturomics Á Gabon Á Gut microbiota strictly anaerobic gram-negative bacterium was recently isolated from a stool specimen of a healthy Gabonese Abbreviations patient. It is a motile coccobacillus without catalase and CSUR Collection de Souches de l’Unite´ des oxidase activities. The genome of Gabonibacter mas- Rickettsies siliensis is 3,397,022 bp long with 2880 ORFs and a G?C DSM Deutsche Sammlung von content of 42.09 %. Of the predicted genes, 2,819 are Mikroorganismen protein-coding genes, and 61 are RNAs. Strain GM7 differs MALDI-TOF Matrix-assisted laser desorption/ from the closest genera within the family Porphyromon- MS ionization time-of-flight mass adaceae both genotypically and in shape and motility. -
Diapositive 1
29.04.2013 ESCMID-BERLIN «Culturomics» © by author ESCMID Online Lecture Library Didier Raoult Marseille - France [email protected] www.mediterranee-infection.com As samples in 2012 We received -220,000 samples for culture (bactéria, fungi, viruses) - 200,000 PCR were performed - 115,000 serological testing were tested © by author Real-time laboratory surveillance of sexually-transmissible infections in Marseille University hospitals reveals rise of gonorrhea, syphilis and HIV seroconversions in 2012. PhilippeESCMID Colson1,2 , Frédérique Online Gouriet1,2 Lecture , Sékéné Badiaga 2,3Library, Catherine Tamalet 1,2, Andreas Stein2,4, Didier Raoult1,2 *. Eurosurveillance 2013 2 Culture has been negleted in clinical microbiology, very few new media have been recently very few introduced but it is still central for: Causality Suceptibility testing Genome sequencing© by author ESCMID Online Lecture Library Pathophysiology 3 NEW IDENTIFICATIONS Helicobacter pylori • Peptic ulcer disease • Cancer of the stomach, grown in 1983 © by author ESCMIDSeen sinceOnline the Lecture 19th century Library 4 © by author ESCMID Online Lecture Library 5 PROGRESSES MADE IN MICROBIOLOGY FROM 1979 TO 2012 THANKS TO THE DEVELOPMENT OF NEW TECHNOLOGIES © by author a) the ESCMIDleft ordinate axis refers toOnline the cumulative numbers Lecture of bacterial species Library with validly published names (green curve); the right ordinate axis refers to the cumulative numbers of sequenced bacterial genomes (purple) and sequenced viral genomes (blue); 6 © by author b) the left ordinate axis refers to the numbers of articles containing “metagenome” as keyword (red) and of articles containing “microbiota” as keyword (grey); the right ordinate axisESCMID refers to the numbers Online of articles containing Lecture “MALDI-TOF” andLibrary “clinical microbiology” as keywords (orange). -
Medical Bacteriology
LECTURE NOTES Degree and Diploma Programs For Environmental Health Students Medical Bacteriology Abilo Tadesse, Meseret Alem University of Gondar In collaboration with the Ethiopia Public Health Training Initiative, The Carter Center, the Ethiopia Ministry of Health, and the Ethiopia Ministry of Education September 2006 Funded under USAID Cooperative Agreement No. 663-A-00-00-0358-00. Produced in collaboration with the Ethiopia Public Health Training Initiative, The Carter Center, the Ethiopia Ministry of Health, and the Ethiopia Ministry of Education. Important Guidelines for Printing and Photocopying Limited permission is granted free of charge to print or photocopy all pages of this publication for educational, not-for-profit use by health care workers, students or faculty. All copies must retain all author credits and copyright notices included in the original document. Under no circumstances is it permissible to sell or distribute on a commercial basis, or to claim authorship of, copies of material reproduced from this publication. ©2006 by Abilo Tadesse, Meseret Alem All rights reserved. Except as expressly provided above, no part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or by any information storage and retrieval system, without written permission of the author or authors. This material is intended for educational use only by practicing health care workers or students and faculty in a health care field. PREFACE Text book on Medical Bacteriology for Medical Laboratory Technology students are not available as need, so this lecture note will alleviate the acute shortage of text books and reference materials on medical bacteriology. -
® 20 E TM 07584J - En - 2010/05
20 100 / 20 160 07584J - en - 2010/05 ® TM IVD 20 E Identification system for Enterobacteriaceae and other non-fastidious Gram-negative rods SUMMARY AND EXPLANATION Material API 20 E is a standardized identification system for - Pipettes or PSIpettes Enterobacteriaceae and other non-fastidious, Gram- - Ampule protector negative rods which uses 21 miniaturized biochemical - Ampule rack tests and a database. The complete list of those - General microbiology laboratory equipment organisms that it is possible to identify with this system is given in the Identification Table at the end of this package POSSIBLE ADDITIONAL REAGENTS insert. - API OF Medium (Ref. 50 110) : Test for the determination of fermentative or oxidative PRINCIPLE metabolism. The API 20 E strip consists of 20 microtubes containing - API M Medium (Ref. 50 120) : dehydrated substrates. These tests are inoculated with Test for motility of facultative anaerobic bacteria. a bacterial suspension that reconstitutes the media. During incubation, metabolism produces color changes WARNINGS AND PRECAUTIONS that are either spontaneous or revealed by the addition of • For in vitro diagnostic use and microbiological reagents. control. The reactions are read according to the Reading Table • For professional use only. and the identification is obtained by referring to the • This kit contains products of animal origin. Certified Analytical Profile Index or using the identification software. knowledge of the origin and/or sanitary state of the animals does not totally guarantee the absence of CONTENT OF THE KIT transmissible pathogenic agents. It is therefore Kit for 25 tests (ref. 20 100) recommended that these products be treated as - 25 API 20 E strips potentially infectious, and handled observing the usual - 25 incubation boxes safety precautions (do not ingest or inhale).