® 20 E TM 07584J - En - 2010/05

Total Page:16

File Type:pdf, Size:1020Kb

® 20 E TM 07584J - En - 2010/05 20 100 / 20 160 07584J - en - 2010/05 ® TM IVD 20 E Identification system for Enterobacteriaceae and other non-fastidious Gram-negative rods SUMMARY AND EXPLANATION Material API 20 E is a standardized identification system for - Pipettes or PSIpettes Enterobacteriaceae and other non-fastidious, Gram- - Ampule protector negative rods which uses 21 miniaturized biochemical - Ampule rack tests and a database. The complete list of those - General microbiology laboratory equipment organisms that it is possible to identify with this system is given in the Identification Table at the end of this package POSSIBLE ADDITIONAL REAGENTS insert. - API OF Medium (Ref. 50 110) : Test for the determination of fermentative or oxidative PRINCIPLE metabolism. The API 20 E strip consists of 20 microtubes containing - API M Medium (Ref. 50 120) : dehydrated substrates. These tests are inoculated with Test for motility of facultative anaerobic bacteria. a bacterial suspension that reconstitutes the media. During incubation, metabolism produces color changes WARNINGS AND PRECAUTIONS that are either spontaneous or revealed by the addition of • For in vitro diagnostic use and microbiological reagents. control. The reactions are read according to the Reading Table • For professional use only. and the identification is obtained by referring to the • This kit contains products of animal origin. Certified Analytical Profile Index or using the identification software. knowledge of the origin and/or sanitary state of the animals does not totally guarantee the absence of CONTENT OF THE KIT transmissible pathogenic agents. It is therefore Kit for 25 tests (ref. 20 100) recommended that these products be treated as - 25 API 20 E strips potentially infectious, and handled observing the usual - 25 incubation boxes safety precautions (do not ingest or inhale). - 25 result sheets • All specimens, microbial cultures and inoculated - 1 clip seal products should be considered infectious and handled - 1 package insert appropriately. Aseptic technique and usual precautions for handling the bacterial group studied should be Kit for 100 tests (ref. 20 160) observed throughout this procedure. Refer to - 100 API 20 E strips (4x25 strips) "CLSI® M29-A, Protection of Laboratory Workers from - 100 incubation boxes Occupationally Acquired Infections; Approved Guideline - 100 result sheets - Current revision". For additional handling precautions, - 1 clip seal refer to "Biosafety in Microbiological and Biomedical - 1 package insert Laboratories - CDC/NIH - Latest edition", or to the regulations currently in use in each country. COMPOSITION OF THE STRIP • Do not use reagents past the expiry date. • Before use, check that the packaging of the various The composition of the API 20 E strip is given in the components is intact. Reading Table of this package insert. • Do not use strips which have been damaged : cupules deformed, desiccant sachet open, etc. REAGENTS AND MATERIAL REQUIRED BUT NOT • The performance data presented were obtained using PROVIDED the procedure indicated in this package insert. Any Reagents change or modification in the procedure may affect the - API NaCl 0.85 % Medium, 5 ml (Ref. 20 230) or results. API Suspension Medium, 5 ml (Ref. 20 150) • Interpretation of the test results should be made taking - API 20 E reagent kit (Ref. 20 120) or into consideration the patient history, the source of the individual reagents : TDA (Ref. 70 402) specimen, colonial and microscopic morphology of the JAMES (Ref. 70 542) strain and, if necessary, the results of any other tests VP 1 + VP 2 (Ref. 70 422) performed, particularly the antimicrobial susceptibility NIT 1 + NIT 2 (Ref. 70 442) patterns. - Zn reagent (Ref. 70 380) - Oxidase (Ref. 55 635*) * reference not sold in certain countries : use an equivalent reagent. - Mineral oil (Ref. 70 100) - API 20 E Analytical Profile Index (Ref. 20 190) or apiweb TM identification software (Ref. 40 011) (consult bioMérieux) bioMérieux SA English - 1 api® 20 E TM 07584J - en - 2010/05 STORAGE CONDITIONS Inoculation of the strip The strips are supplied in an aluminum pouch with • With the same pipette, distribute the bacterial desiccant sachets. suspension into the tubes of the strip (to avoid the Once opened (*), the pouch should be re-sealed using the formation of bubbles at the base of the tubes, tilt the clip seal (included in the kit) to preserve the remaining strip slightly forward and place the tip of the pipette or strips with the desiccant sachets : place the open end of PSIpette against the side of the cupule): the pouch along the seal and carefully clamp between - For the CIT , VP and GEL tests, fill both tube and the two parts. The strips may then be kept for up to cupule, 10 months after the pouch has been opened, at 2-8°C - For the other tests, fill only the tubes (and not the (or until the expiry date indicated on the packaging, if this cupules), comes before). - for the tests ADH, LDC, ODC, H2S and URE, create (*) Recommended method for opening the pouches : cut anaerobiosis by overlaying with mineral oil. open the pouch just below the seal while holding the • Close the incubation box. pouch upright, in order to avoid damaging the desiccant • Incubate at 36°C ± 2°C for 18-24 hours. sachets. READING AND INTERPRETATION SPECIMENS (COLLECTION AND PREPARATION) Reading the strip API 20 E is not for use directly with clinical or other • After the incubation period, read the strip by referring to specimens. the Reading Table. The microorganisms to be identified must first be iso- • If 3 or more tests (GLU test + or –) are positive, record lated on a culture medium adapted to the culture of all the spontaneous reactions on the result sheet and Enterobacteriaceae and/or non-fastidious Gram-negative then reveal the tests which require the addition of rods, according to standard microbiological techniques. reagents : INSTRUCTIONS FOR USE - TDA Test : add 1 drop of TDA reagent. A reddish Oxidase test brown color indicates a positive reaction to be recorded on the result sheet. The oxidase test must be performed according to the - IND Test : add 1 drop of JAMES reagent. A pink color manufacturer's instructions for use. The result should be developed in the whole cupule indicates a positive recorded on the result sheet as it is an integral part of the reaction to be recorded on the result sheet. final profile (21st identification test). - VP Test : add 1 drop each of VP 1 and VP 2 reagents. Preparation of the strip Wait at least 10 minutes. A pink or red color indicates • Prepare an incubation box (tray and lid) and distribute a positive reaction to be recorded on the result sheet. about 5 ml of distilled water or demineralized water If a slightly pink color appears after 10 minutes, the [or any water without additives or chemicals which may reaction should be considered negative. NOTE : The indole production test must be performed release gases (e.g., Cl2, CO2, etc.)] into the honey- combed wells of the tray to create a humid atmosphere. last since this reaction releases gaseous products which • Record the strain reference on the elongated flap of the interfere with the interpretation of other tests on the tray. (Do not record the reference on the lid as it may be strip. The plastic incubation lid should not be replaced misplaced during the procedure). after the addition of the reagent. • Remove the strip from its packaging. • If the number of positive tests (including the GLU test) • Place the strip in the incubation box. before adding the reagents is less than 3 : NOTE : API 20 E should only be used with - Reincubate the strip for a further 24 hours (± 2 hours) Enterobacteriaceae and/or non-fastidious Gram-negative without adding any reagents. rods. Fastidious organisms having demanding nutritional - Reveal the tests requiring the addition of reagents requirements and requiring appropriate handling (see previous paragraph). precautions (i.e., Brucella and Francisella) are not - To complete the identification, it may be necessary to included in the API 20 E database. Alternative procedures perform supplementary tests (refer to Identification must be used to exclude or confirm their presence. paragraph). Preparation of the inoculum Interpretation • Open an ampule of API NaCl 0.85 % Medium (5 ml) or Identification is obtained with the numerical profile. an ampule of API Suspension Medium (5 ml) as • Determination of the numerical profile : indicated in the paragraph "Warnings and Precautions" On the result sheet, the tests are separated into groups of the package insert for these products, or use any tube of 3 and a value 1, 2 or 4 is indicated for each. By containing 5 ml of sterile saline or sterile distilled water, adding together the values corresponding to positive without additives. reactions within each group, a 7-digit profile number is • Using a pipette or PSIpette, remove a single well- obtained for the 20 tests of the API 20 E strip. The isolated colony from an isolation plate. It is oxidase reaction constitutes the 21st test and has a recommended to use young cultures (18-24 hours old). value of 4 if it is positive. • Carefully emulsify to achieve a homogeneous bacterial • Identification : suspension. This is performed using the database (V4.1) This suspension must be used immediately after * with the Analytical Profile Index : preparation. - Look up the numerical profile in the list of profiles. NOTE : most Vibrio species are halophilous. If a Vibrio is * with the apiweb TM identification software : suspected, suspend the bacteria in API NaCl 0.85 % - Enter the 7-digit numerical profile manually via the Medium. keyboard. bioMérieux SA English - 2 api® 20 E TM 07584J - en - 2010/05 In some cases, the 7-digit profile is not discriminatory - Motility (MOB) : Inoculate an ampule of API M Medium enough and the following supplementary tests need to be (see package insert).
Recommended publications
  • Technical Report the Vitek Analyser for Routine Bacterial Identification And
    316 J Clin Pathol 1998;51:316–323 Technical report J Clin Pathol: first published as 10.1136/jcp.51.4.316 on 1 April 1998. Downloaded from The Vitek analyser for routine bacterial identification and susceptibility testing: protocols, problems, and pitfalls N Shetty, G Hill, G L Ridgway Abstract covered, maintenance and quality control Automated and semiautomated technol- costs, and the presence of a versatile software ogy in microbiology has seen great ad- package. This report describes our experiences vances in recent years. The choice of with the Vitek system (bioMerieux, UK) in the automated equipment for the identifica- one year since its inception into a busy micro- tion and susceptibility testing of bacteria biology diagnostic laboratory in the United in a routine diagnostic laboratory depends Kingdom. It is worth noting that the choice on speed, accuracy, ease of use, and cost and range of antibiotics on susceptibility factors. The Vitek analyser (bioMerieux, testing cards were custom made for the UK) was installed in a busy diagnostic University College London Hospitals teaching hospital laboratory in London. (UCLH). This report describes one year’s experience. Changes to work practice as a result of incorporating the equipment into Identification and susceptibility testing the laboratory, and the advantages and on the Vitek system disadvantages of automation in key areas Identification of microorganisms is accom- are described in detail, together with pos- plished by biochemical methods. A turbido- sible solutions to problems. The Vitek metrically controlled suspension of pure colo- analyser was found to be valuable for the nies in saline is inoculated into identification http://jcp.bmj.com/ speed and accuracy with which results cards.
    [Show full text]
  • Time-To-Positivity, Type of Culture Media and Oxidase Test Performed on Positive Blood Culture Vials to Predict Pseudomonas Aeru
    Original Nazaret Cobos-Trigueros1 Time-to-positivity, type of culture media and oxidase Yuliya Zboromyrska2 Laura Morata1 test performed on positive blood culture vials to predict Izaskun Alejo2 Cristina De La Calle1 Pseudomonas aeruginosa in patients with Gram-negative Andrea Vergara2 Celia Cardozo1 bacilli bacteraemia 1 Maria P. Arcas 1 1 Department of Infectious Diseases, Hospital Clínic, IDIBAPS, Barcelona University, Barcelona, Spain. Alex Soriano 2Department of Clinical Microbiology, Hospital Clínic, Barcelona University, Barcelona, Spain. Francesc Marco2 Josep Mensa1 Manel Almela2 Jose A. Martinez1 ABSTRACT Tiempo de positividad, tipo de medio de cultivo y prueba de oxidasa realizada en Introduction. The aim of this study was to determine the viales de hemocultivo positivos para predecir usefulness of oxidase test and time-to-positivity (TTP) in aer- Pseudomonas aeruginosa en pacientes con obic and anaerobic blood culture vials to detect the presence bacteriemia por bacilos gramnegativos of Pseudomonas aeruginosa in patients with Gram-negative bacilli (GNB) bacteraemia. RESUMEN Material and methods. TTP was recorded for each aer- obic and anaerobic blood culture vial of monomicrobial bac- Introducción. El objetivo del estudio fue determinar la utili- teraemia due to GNB. Oxidase test was performed in a pellet dad de la prueba de oxidasa y del tiempo de positividad del hemo- of the centrifuged content of the positive blood culture. An cultivo (TPH) para detectar la presencia de Pseudomonas aerugino- algorithm was developed in order to perform the oxidase test sa en pacientes con bacteriemia por bacilos gramnegativos (BGN). efficiently taking into account TTP and type of vial. Material y métodos. Se registró el TPH de cada vial ae- Results.
    [Show full text]
  • Laboratory Diagnosis of Urinary Tract Infections Using Diagnostics Tests in Adult Patients
    International Journal of Research in Medical Sciences Akmal Hasan SK et al. Int J Res Med Sci. 2014 May;2(2):415-421 www.msjonline.org pISSN 2320-6071 | eISSN 2320-6012 DOI: 10.5455/2320-6012.ijrms20140508 Research Article Laboratory diagnosis of urinary tract infections using diagnostics tests in adult patients Akmal Hasan SK1*, Naveen Kumar T2, Radha Kishan N3, Neetha K3 1Department of Medical Microbiology, Mamata Medical College, Khammam, Andhra Pradesh, India 2Department of Pharmacology, Apollo Institute of Medical Sciences and Research, Hyderabad, Andhra Pradesh, India 3 Department of Biochemistry, Apollo Institute of Medical Sciences and Research, Hyderabad, Andhra Pradesh, India Received: 26 December 2013 Accepted: 07 January 2014 *Correspondence: Dr. Akmal Hasan SK, E-mail: [email protected] © 2014 Akmal Hasan SK et al. This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. ABSTRACT Background: The primary aim of this study was to evaluate laboratory diagnosis of urinary tract infection using diagnostics tests in adult patients. Methods: Among the diagnostic tests, urinalysis is useful mainly for excluding bacteriuria. For isolation of pathogenic bacteria semiquantitative culture techniques was used and biochemical tests were done to differentiate Gram +ve and Gram –ve bacteria. Results: The incidence of pathogenic infection caused by Escherichia coli accounts for 216 cases (60%) followed by Pseudomonas, Staphylococcus aureus and Klebsiella. Conclusion: Physicians should distinguish urinary tract infections caused by different organisms for an effective treatment and appropriate clinical information gives clues for better diagnostic evaluation and their susceptibility to antimicrobial agents as well addressing host factors that contribute to the occurrence of infection.
    [Show full text]
  • Limited Vs Full Microbiological Investigation for the Management of Symptomatic Polymicrobial Urinary Tract Infection in Adult Spinal Cord- Injured Patients
    Spinal Cord (1997) 35, 534 ± 539 1997 International Medical Society of Paraplegia All rights reserved 1362 ± 4393/97 $12.00 Limited vs full microbiological investigation for the management of symptomatic polymicrobial urinary tract infection in adult spinal cord- injured patients Rabih O Darouiche, Michael Priebe and Jill E Clarridge Baylor College of Medicine and the Veterans Aairs Medical Center, 2002 Holcombe Boulevard, Houston, Texas 77030, USA Spinal cord-injured (SCI) patients often suer from symptomatic polymicrobial urinary tract infection (UTI). The objective of this study was to evaluate the clinical outcome and cost- savings associated with antibiotic therapy based on limited vs full microbiological investigation of urine cultures in adult SCI patients with symptomatic polymicrobial UTI (52 organisms growing in urine cultures). In the ®rst part of the study, a total of 40 evaluable patients were prospectively randomized in a single-blinded fashion to receive antibiotic therapy based on either limited (21 patients) or full microbiologic investigation (19 patients) of urine cultures. The practicality of a limited microbiological investigation was further examined in the second part of the study where 12 consecutive patients with symptomatic polymicrobial UTI initially had only limited microbiological investigation of urine cultures and received antibiotic therapy accordingly. When analyzing all patients in the study, the likelihood of adequate clinical response was not signi®cantly dierent between those who received antibiotic therapy based on limited (28/33=85%) vs full (18/19=95%) microbiological investigation of urine cultures (P=0.40). An average of 183 US dollars could be saved per patient by managing symptomatic polymicrobial UTI based on a limited vs a full microbiological investigation.
    [Show full text]
  • Oxidase Test
    Microbiology Laboratory (BIOL 3702L) Page 1 of 3 OXIDASE TEST Principle and Purpose Oxidase enzymes are key components of the electron transport system and have a critical role in aerobic respiration. In particular, cytochrome c oxidase, which is usually only present in aerobic organisms, uses molecular oxygen as an electron acceptor generating water as a consequence of the reduction-oxidation reaction. The oxidase test, as conducted within this exercise, will detect the activity of cytochrome oxidase or indophenol oxidase. Not all microbes possess these enzymes. The presence or absence of oxidases can be used to distinguish between various species of cocci as well as Gram-negative bacilli. Among the cocci, Micrococcus, Neiserria and Moraxella are oxidase positive, whereas most species of Staphylococcus, Streptococcus, and Enterococcus are oxidase negative. An example of an oxidase negative bacillus is Pseudomonas, whereas enterobacteria are generally oxidase positive. In the present exercise, students will use a commercial product, OxiSticks™ Oxidase Swabs (Fig. 1; Hardy Diagnostics), which are impregnated with N,N,N',N'-tetramethyl-p- phenylenediamine dihydrochloride (TMPD). If present in a test organism, cytochrome c oxidase or indophenol oxidase will be reduced Figure 1. Oxidase Swab Test. The by this reagent, i.e., accept an electron from development of a blue/purple color within TMPD. The TMPD then forms a product that 10-20 seconds is indicative of a positive is dark purple/blue to maroon in color within oxidase reaction. 30 seconds. Learning Objectives Upon completion of this exercise, a student should be able to: • Understand the underlying mechanism of the oxidase test; • Properly conduct the oxidase test; and • Accurately interpret the results of this test.
    [Show full text]
  • Rapid and Economical Identification and Antimicrobial Susceptibility Test Methodology for Urinary Tract Pathogens
    JOURNAL OF CLINICAL MICROBIOLOGY, Dec. 1983, p. 1287-1291 Vol. 18, No. 6 0095-1137/83/121287-05$02.00/0 Copyright © 1983, American Society for Microbiology Rapid and Economical Identification and Antimicrobial Susceptibility Test Methodology for Urinary Tract Pathogens STEPHEN C. EDBERG* AND RICHARD W. TREPETA Clinical Microbiology Laboratory, Department of Laboratory Medicine, Yale-New Haven Hospital, Yale University School ofMedicine, New Haven, Connecticut 06504 Received 5 May 1983/Accepted 2 September 1983 To decrease the time and cost of processing urine cultures, we devised a critical pathway to identify and perform antibiotic susceptibility tests on commonly isolated microbial pathogens within 6 h of growth detection. The strategy was based on eliminating expensive kits and automated procedures when not required. A pathway utilizing a statistical matrix and three rapid biochemical tests required to identify the most common pathogen, Escherichia coli, was developed. This species, which represented 82% of urinary isolates, was identified in 1 h for less than 10% the cost of a commercial kit. The specificity of the 1-h E. coli identification battery was .99.9% with a sensitivity of 93%. In addition, this critical pathway, adapting published methods, permitted the identification of other enteric pathogens, the group D streptococci, and Pseudomonas aeruginosa within 4 to 6 h. Furthermore, it accounted for other microbes that required longer periods of incubation. The pathway also included a rapid disk diffusion sensitivity test. Utilizing the critical pathway strategy, 76% (E. coli frequency of 0.82 x E. coli sensitivity of 0.93) of all urinary pathogens were identified within 1 h, and 98% were identified within 4 h with an antibiotic sensitivity test available within 6 h after the observation of growth.
    [Show full text]
  • Identification of Shigella Species
    UK Standards for Microbiology Investigations 2013 Identification of Shigella species DECEMBER 13 - NOVEMBER 15 BETWEEN ON CONSULTED WAS DOCUMENT THIS - DRAFT Issued by the Standards Unit, Microbiology Services, PHE Bacteriology – Identification | ID 20 | Issue no: di+ | Issue date: dd.mm.yy <tab+enter> | Page: 1 of 20 © Crown copyright 2013 Identification of Shigella species Acknowledgments UK Standards for Microbiology Investigations (SMIs) are developed under the auspices of Public Health England (PHE) working in partnership with the National Health Service (NHS), Public Health Wales and with the professional organisations whose logos are displayed below and listed on the website http://www.hpa.org.uk/SMI/Partnerships. SMIs are developed, reviewed and revised by various working groups which are overseen by a steering committee (see http://www.hpa.org.uk/SMI/WorkingGroups). The contributions of many individuals in clinical, specialist and reference laboratories2013 who have provided information and comments during the development of this document are acknowledged. We are grateful to the Medical Editors for editing the medical content. For further information please contact us at: DECEMBER 13 Standards Unit - Microbiology Services Public Health England 61 Colindale Avenue London NW9 5EQ NOVEMBER E-mail: [email protected] 15 Website: http://www.hpa.org.uk/SMI UK Standards for Microbiology Investigations are produced in association with: BETWEEN ON CONSULTED WAS DOCUMENT THIS - DRAFT Bacteriology – Identification | ID 20 | Issue no: di+ | Issue date: dd.mm.yy <tab+enter> | Page: 2 of 20 UK Standards for Microbiology Investigations | Issued by the Standards Unit, Public Health England Identification of Shigella species Contents ACKNOWLEDGMENTS .......................................................................................................... 2 AMENDMENT TABLE ............................................................................................................
    [Show full text]
  • Salmonella Surveillance and Laboratory Support Project of the World Health Organization
    Global Salm-Surv A global Salmonella surveillance and laboratory support project of the World Health Organization Laboratory Protocols Level 1 Training Course Kits for identification of Enterobacteriaceae Using API. 4th Ed. April 2003 Edited by: Rene S. Hendriksen (DFVF) Foreword Despite the controls that have already been put into place, Salmonella infection arising from contaminated food continues to be an immense problem with millions of cases occurring annually throughout the world. In addition to the misery caused, financial loss is enormous. Detection of Salmonella before contaminated foods can be consumed is therefore an essential feature of safeguarding public health and incidentally preserving the reputations and fortunes of food manufacturers and processors. Surveillance of Salmonella in all the different stages of feed-food chain constitutes an important element in the exploration of epidemiology of foodborne salmonellosis, and in the development and implementation of efficient Salmonella control strategies. Efficient laboratory methods for isolation, identification and typing of Salmonella are essential elements in Salmonella monitoring and control programmes. This protocol describes methods that have been extensively documented in the scientific literature, are accepted by international standardisation bodies and can be applied under most conditions and circumstances in laboratories worldwide. It is, however, important to note the following: There are many different procedures for isolation of Salmonella. The ideal method has a high sensitivity and specificity, and at the same time is simple, rapid and inexpensive. No single method fulfils all these criteria, and no single method is optimal for all purposes. Therefore, it is advisable to consult the literature before choosing a method for a particular purpose.
    [Show full text]
  • API 20E Manufacture Instructions
    REF 20 100 / 20 160 07584D - GB - 2002/10 ® IVD 20 E Identification system for Enterobacteriaceae and other non-fastidious Gram-negative rods SUMMARY AND EXPLANATION Material : API 20 E is a standardized identification system for - Pipettes or PSIpettes Enterobacteriaceae and other non-fastidious, Gram- - Ampule protector negative rods which uses 21 miniaturized biochemical - Ampule rack tests and a database. The complete list of those - General microbiology laboratory equipment organisms that it is possible to identify with this system is given in the Identification Table at the end of this package POSSIBLE ADDITIONAL REAGENTS : insert. - API OF Medium (Ref. 50 110) : Test for the determination of fermentative or oxidative PRINCIPLE metabolism. The API 20 E strip consists of 20 microtubes containing - API M Medium (Ref. 50 120) : dehydrated substrates. These tests are inoculated with Test for motility of facultative anaerobic bacteria. a bacterial suspension that reconstitutes the media. During incubation, metabolism produces color changes WARNINGS AND PRECAUTIONS that are either spontaneous or revealed by the addition of • For in vitro diagnostic use and microbiological reagents. control. The reactions are read according to the Reading Table • For professional use only. and the identification is obtained by referring to the • This kit contains products of animal origin. Certified Analytical Profile Index or using the identification software. knowledge of the origin and/or sanitary state of the animals does not totally guarantee the absence of CONTENT OF THE KIT transmissible pathogenic agents. It is therefore Kit for 25 tests (ref. 20 100) recommended that these products be treated as - 25 API 20 E strips potentially infectious, and handled observing the usual - 25 incubation boxes safety precautions (do not ingest or inhale).
    [Show full text]
  • The Microscopic Examination of Milk Characterization of Milk Bacteria and Cells
    The Microscopic Examination of Milk Characterization of Milk Bacteria and Cells The microscope has been used to observe and count bacteria and somatic cells in raw milk since the early 1900’s. It has proven to be a valuable tool to the dairy industry. The milk smear procedure in use today is outlined in detail in the most recent edition of Standard Methods for the Examination of Dairy Products (i.e., SMEDP, 17th ed) and other references. For somatic cell counting, the Direct Microscopic Somatic Cell Count (DMSCC) is considered an official reference method used for regulatory purposes for direct milk counts and/or for calibration of approved electronic instruments. The regulatory procedure for somatic cells is outlined in detail in the most recent FDA 2400 Form. With the exception of the type of cells counted, the 2400 form procedure can be used for bacteria as well. While the Direct Microscopic Clump Count (DMCC) for bacteria is not considered an official test for bacteria counts, it is used throughout the dairy industry to estimate bacteria colony forming units (i.e., “clumps”) in raw milk samples taken from the farm, the tank truck or the plant storage facility. The DMCC is most widely used to screen incoming raw milk supplies (i.e., tank-trucks) to determine whether the milk has an acceptable or legal bacterial load and has become accepted in some states as a legal method for rejection of unacceptable milk. In addition to providing estimated counts of bacteria and somatic cells, the direct microscopic method has also been used as a trouble-shooting guide in attempts to identify the general types of bacteria present in a milk sample.
    [Show full text]
  • Standard Operating Procedure◄
    ►Standard Operating Procedure◄ Section: Laboratory Version: FINAL Initials: AD Title: 2.0 Testing Algorithm Revision Date: 20 Oct 2011 1. Definitions 1.1 SOP: Standard Operating Procedure 1.2 CRF: Case Report Form 2. Purpose / Background 2.1. The purpose of this SOP is to provide guidance for the processing, testing and storage of all PERCH study specimens. 3. Scope / Applicability 3.1. This SOP applies to all laboratory personnel involved in the processing of laboratory specimens. 4. Prerequisites / Supplies Needed 4.1. See test specific SOPs for supplies needed. 5. Roles / Responsibilities [Site specific, as needed] 6. Procedural Steps 6.1 Accepting/Rejecting Specimens: Staff who receive specimens in the laboratory are responsible, to the best of their ability, for ensuring that specimens have been stored and transported under the conditions specified in Appendix 1, Specimen Transport and Storage Conditions. Specimens will only be rejected for processing for the following reasons: (a) specimen is unlabeled (b) specimen ID does not match the requisition form (c) blood is hemolyzed, or anticoagulated specimens contain clots (d) specimen container is leaking. 6.2 Process all study specimens according to the flow charts and specimen preparation tables below. Any departure from the flow charts listed below (e.g. instances of insufficient volume) should be documented as part of the laboratory’s quality management process. For specific processing instructions, please refer to the relevant specimen processing SOP. SOP ID# 2.0 Testing Algorithm version : FINAL Page 2 of 30 *NB As an alternative, all EDTA blood from cases 6.1a can be collected into one tube.
    [Show full text]
  • Determination of Antibiotic Susceptibility Pattern of Clinical Isolates of Salmonella Typhi and Escherichia Coli
    Annals of Reviews and Research Research Article Ann Rev Resear Volume 2 Issue 5 - August 2018 Copyright © All rights are reserved by Muhammad Ali Determination of Antibiotic Susceptibility Pattern of Clinical Isolates of Salmonella Typhi and Escherichia Coli Farouk Nas S1, Musa Diso AA2, Idris IS3 and Muhammad Ali4* 1Department of Biological Science, Bayero University, Nigeria 2Department of Science Laboratory Technology, School of Technology, Nigeria 3Department of Pharmaceutical Technology, School of Technology, Nigeria 4Microbiology Department, Kano University of Science and Technology, Nigeria Submission: June 21, 2018; Published: August 08, 2018 *Corresponding author: Muhammad Ali, Microbiology Department, Kano University of Science and Technology Wudil, Kano, Nigeria, Tel: 2347032967252, Email: Abstract The aim of the study is to determine the antibiotic sensitivity pattern of clinical isolates of Salmonella typhi and Escherichia coli. The isolates test.were The obtained sensitivity from patternstool sample of Salmonella of typhoid typhi fever and patients Escherichia attending coli was Muhammad tested against Abdullahi commercially wase Specialist prepared Hospital antibiotics Kano. sensitivity Identification disc ofusing the bacterial isolates was done using conventional standard laboratory methods including Gram staining, culturalSalmonella characterization typhi was and susceptible biochemical to andKirby-Bauer Nalidixic method. acid is intermediate. Based on the On finding the other of this hand, study, Escherichia most of the coli antibiotics were found are resistant active against to Augmentin, the isolates. Ceporex and Ampicillin while sensitive Travid, Reflacin, Ciprofloxacin, Streptomycin and Gentamicin but resistance to Ampicillin. However, its sensitivity to Septrin Augmentin, Ceporex to Reflacin, Taravid, Septri and Streptomycin while Escherichia coli were found intermediate sensitive to Ciprofloxacin and Gentamicin.
    [Show full text]