On the Low Genetic Variability in Drosophila Immigrans and D
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University of Mysore
Biodata of Dr. N. B. RAMACHANDRA Ph.D, FASc PROFESSOR, AND PRINCIPAL INVESTIGATOR Chairman - Department of Studies in Genetics and Genomics Chairman- Board of Studies in Genetics and Genomics Deputy Coordinator for UGC-SAP (CAS-1), DOS in Zoology Director- University of Mysore Genome Centre (Local Secretary - 103rd Indian Science Congress 2016 Former Chairman-Board of Studies in Zoology (UG&PG) & BOS in Clinical Research & Clinical Data Management) University of Mysore, Manasagangotri, Mysuru – 570 006, INDIA [email protected] / [email protected] http://scholar.google.co.in/citations?user=CBqZv1oAAAAJ http://www.ramachandralab.com/ Phone: 0821-2419781/888 (O) ; Mobile: 09880033687 1. Date of Birth: 31.05.1958 2. Educational Qualification: 1982-88: Ph.D. in Zoology, Department of Zoology, University of Mysore, INDIA. Thesis title: "Contributions to population cytogenetics of Drosophila: Studies on interracial hybridization and B-chromosomes". 1980-82: M.Sc. in Zoology, 1st Class with 2nd Rank, University of Mysore, Mysore. 1977-80: B.Sc. (Chemistry, Botany, and Zoology), 1st class, Cauvery College, Gonicoppal, University of Mysore, INDIA. 3. Area of Specialization: 1) Drosophila Genetics and Evolution 2) Human Genetic Diseases and Genomics 4. Awards/ Recognitions: Sl.No. Year Recognition Institution “Best boy of the college” Cauvary College, Gonicoppal, Univ. 1 1980 award of Mysore. 2 1982 II Rank in M.Sc DOS in Zoology, Univ. of Mysore. Government of India Nehru Department of Biological sciences, 3 1990 Centenary British Fellowship Warwick University, Coventry, United (common wealth) Award Kingdom (not availed). 1990 - McMaster University, Department of 4. 1992 Post Doctoral Fellow Award Biochemistry, Canada University of California, Department of 1999- Senior Research Associate 5 Cell Molecular and Developmental 2000 II award Biology, Los Angeles, USA VISITING PROFESSOR- to Dept. -
Analysis of Drosophila Buzzatii Transposable Elements Doctoral
Analysis of Drosophila buzzatii transposable elements Doctoral Thesis Nuria Rius Camps Departament de Genetica` i de Microbiolog`ıa, Universitat Autonoma de Barcelona, Bellaterra (Barcelona), Spain Memoria` presentada per la Llicenciada en Biologia Nuria Rius Camps per a optar al grau de Doctora en Genetica.` Nuria Rius Camps Bellaterra, a 23 de novembre de 2015 El Doctor Alfredo Ruiz Panadero, Catedratic` del Departament de Genetica` i Microbiologia de la Fac- ultat de Biociencies` de la Universitat Autonoma` de Barcelona, CERTIFICA que Nuria Rius Camps ha dut a terme sota la seva direccio´ el treball de recerca realitzat al Departament de Genetica` i Microbiologia de la Facultat de Biociencies` de la Universitat Autonoma` de Barcelona que ha portat a l’elaboracio´ d’aquesta Tesi Doctoral titulada “Analysis of Drosophila buz- zatii transposable elements”. I perque` consti als efectes oportuns, signa el present certificat a Bellaterra, a 23 de novembre de 2015 Alfredo Ruiz Panadero I tell you all this because it’s worth recognizing that there is no such thing as an overnight success. You will do well to cultivate the resources in yourself that bring you happiness outside of success or failure. The truth is, most of us discover where we are headed when we arrive. At that time, we turn around and say, yes, this is obviously where I was going all along. It’s a good idea to try to enjoy the scenery on the detours, because you’ll probably take a few. (Bill Watterson) CONTENTS Abstract iii Resumen v 1. Introduction 1 1.1. Transposable elements .......................... 1 1.1.1. -
THEODOSIUS DOBZHANSKY January 25, 1900-December 18, 1975
NATIONAL ACADEMY OF SCIENCES T H E O D O S I U S D O B ZHANSKY 1900—1975 A Biographical Memoir by F R A N C I S C O J . A Y A L A Any opinions expressed in this memoir are those of the author(s) and do not necessarily reflect the views of the National Academy of Sciences. Biographical Memoir COPYRIGHT 1985 NATIONAL ACADEMY OF SCIENCES WASHINGTON D.C. THEODOSIUS DOBZHANSKY January 25, 1900-December 18, 1975 BY FRANCISCO J. AYALA HEODOSIUS DOBZHANSKY was born on January 25, 1900 Tin Nemirov, a small town 200 kilometers southeast of Kiev in the Ukraine. He was the only child of Sophia Voinarsky and Grigory Dobrzhansky (precise transliteration of the Russian family name includes the letter "r"), a teacher of high school mathematics. In 1910 the family moved to the outskirts of Kiev, where Dobzhansky lived through the tumultuous years of World War I and the Bolshevik revolu- tion. These were years when the family was at times beset by various privations, including hunger. In his unpublished autobiographical Reminiscences for the Oral History Project of Columbia University, Dobzhansky states that his decision to become a biologist was made around 1912. Through his early high school (Gymnasium) years, Dobzhansky became an avid butterfly collector. A schoolteacher gave him access to a microscope that Dob- zhansky used, particularly during the long winter months. In the winter of 1915—1916, he met Victor Luchnik, a twenty- five-year-old college dropout, who was a dedicated entomol- ogist specializing in Coccinellidae beetles. -
Early-Stage Evolution of the Neo-Y Chromosome in Drosophila
Zoological Studies 50(3): 338-349 (2011) Early-Stage Evolution of the Neo-Y Chromosome in Drosophila albomicans Chia-Hao Cheng1, Ching-Ho Chang2, and Hwei-yu Chang1,3,* 1Department of Entomology, National Taiwan Univ., Taipei 106, Taiwan 2Institute of Ecology and Evolutionary Biology, National Taiwan Univ., Taipei 106, Taiwan 3Biodiversity Research Center, Academia Sinica, Nankang, Taipei 115, Taiwan (Accepted December 27, 2010) Chia-Hao Cheng, Ching-Ho Chang, and Hwei-yu Chang (2011) Early-stage evolution of the neo-Y chromosome in Drosophila albomicans. Zoological Studies 50(3): 338-349. Numerous theories have specified that an originally autosomal neo-Y chromosome arm is expected to undergo degenerative evolution. Neo- sex chromosomes of Drosophila albomicans originated from 2 Robertsonian translocation events, one for X and the other for Y, between ancestral Drosophila sex chromosomes and a pair of autosomes homologous to the 3rd chromosomes of its sibling species D. nasuta. Since the neo-sex chromosome in D. albomicans is still evolutionarily young, we used genetic approaches to reveal changes in the entire neo-Y chromosome. Non-disjunction is an indicator used to investigate differences between homologous chromosomes. In this study, we first confirmed that no male recombination had occurred in hybrid males of these 2 sibling species. With the aid of molecular marker genotyping and direct karyotyping of aneuploid offspring produced through specially designed crosses and backcrosses of fertile hybrids, we found that the non-disjunction rate was significantly higher in hybrid males with the neo-Y chromosome than in hybrids without it. The high non- disjunction rate made it possible to generate 3,X,X/neo-Y F2 females and X,neo-Y/neo-Y F3 male offspring which can reveal recessive effects of the homozygous 3rd chromosome arm. -
Downloaded Transcribed from an RNA Template Directly Onto a Consensus Sequences of Jockey Families Deposited in the Tambones Et Al
Tambones et al. Mobile DNA (2019) 10:43 https://doi.org/10.1186/s13100-019-0184-1 RESEARCH Open Access High frequency of horizontal transfer in Jockey families (LINE order) of drosophilids Izabella L. Tambones1, Annabelle Haudry2, Maryanna C. Simão1 and Claudia M. A. Carareto1* Abstract Background: The use of large-scale genomic analyses has resulted in an improvement of transposable element sampling and a significant increase in the number of reported HTT (horizontal transfer of transposable elements) events by expanding the sampling of transposable element sequences in general and of specific families of these elements in particular, which were previously poorly sampled. In this study, we investigated the occurrence of HTT events in a group of elements that, until recently, were uncommon among the HTT records in Drosophila – the Jockey elements, members of the LINE (long interspersed nuclear element) order of non-LTR (long terminal repeat) retrotransposons. The sequences of 111 Jockey families deposited in Repbase that met the criteria of the analysis were used to identify Jockey sequences in 48 genomes of Drosophilidae (genus Drosophila, subgenus Sophophora: melanogaster, obscura and willistoni groups; subgenus Drosophila: immigrans, melanica, repleta, robusta, virilis and grimshawi groups; subgenus Dorsilopha: busckii group; genus/subgenus Zaprionus and genus Scaptodrosophila). Results: Phylogenetic analyses revealed 72 Jockey families in 41 genomes. Combined analyses revealed 15 potential HTT events between species belonging to different -
Halona2021r.Pdf
Terrestrial Arthropod Survey of Hālona Valley, Joint Base Pearl Harbor-Hickam, Naval Magazine Lualualei Annex, August 2020–November 2020 Neal L. Evenhuis, Keith T. Arakaki, Clyde T. Imada Hawaii Biological Survey Bernice Pauahi Bishop Museum Honolulu, Hawai‘i 96817, USA Final Report prepared for the U.S. Navy Contribution No. 2021-003 to the Hawaii Biological Survey EXECUTIVE SUMMARY The Bishop Museum was contracted by the U.S. Navy to conduct surveys of terrestrial arthropods in Hālona Valley, Naval Magazine Lualualei Annex, in order to assess the status of populations of three groups of insects, including species at risk in those groups: picture-winged Drosophila (Diptera; flies), Hylaeus spp. (Hymenoptera; bees), and Rhyncogonus welchii (Coleoptera; weevils). The first complete survey of Lualualei for terrestrial arthropods was made by Bishop Museum in 1997. Since then, the Bishop Museum has conducted surveys in Hālona Valley in 2015, 2016–2017, 2017, 2018, 2019, and 2020. The current survey was conducted from August 2020 through November 2020, comprising a total of 12 trips; using yellow water pan traps, pitfall traps, hand collecting, aerial net collecting, observations, vegetation beating, and a Malaise trap. The area chosen for study was a Sapindus oahuensis grove on a southeastern slope of mid-Hālona Valley. The area had potential for all three groups of arthropods to be present, especially the Rhyncogonus weevil, which has previously been found in association with Sapindus trees. Trapped and collected insects were taken back to the Bishop Museum for sorting, identification, data entry, and storage and preservation. The results of the surveys proved negative for any of the target groups. -
Chemical Ecology of Pollination in Deceptive Ceropegia
Chemical Ecology of Pollination in Deceptive Ceropegia CHEMICAL ECOLOGY OF POLLINATION IN DECEPTIVE CEROPEGIA DISSERTATION zur Erlangung des Doktorgrades Dr. rer. nat. an der Bayreuther Graduiertenschule für Mathematik und Naturwissenschaften (BayNAT) der Universität Bayreuth vorgelegt von Annemarie Heiduk Bayreuth, Januar 2017 Die vorliegende Arbeit wurde in der Zeit von Februar 2012 bis Dezember 2016 in Bayreuth am Lehrstuhl Pflanzensystematik unter der Betreuung von Herrn Univ.-Prof. Dr. Stefan Dötterl (Erst-Mentor) und Herrn PD Dr. Ulrich Meve (Zweit-Mentor) angefertigt. Gefördert wurde die Arbeit von Februar bis April 2012 durch den ‛Feuerwehrfond’ zur Doktorandenförderung der Universität Bayreuth, von Mai 2012 bis April 2015 durch ein Stipendium nach dem Bayerischen Eliteförderungsgesetzt (BayEFG), und von Mai bis Juli 2015 durch ein Stipendium des Bayerischen Programms zur Förderung der Chancengleichheit für Frauen in Forschung und Lehre. Vollständiger Abdruck der von der Bayreuther Graduiertenschule für Mathematik und Naturwissenschaften (BayNAT) der Universität Bayreuth genehmigten Dissertation zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.). Dissertation eingereicht am: 02.02.2017 Zulassung durch das Leitungsgremium: 10.02.2017 Wissenschaftliches Kolloquium: 31.05.2017 Amtierender Direktor: Prof. Dr. Stephan Kümmel Prüfungsausschuss: Prof. Dr. Stefan Dötterl (Erstgutachter) Prof. Dr. Konrad Dettner (Zweitgutachter) Prof. Dr. Heike Feldhaar (Vorsitz) Prof. Dr. Bettina Engelbrecht Declaration of self-contribution This dissertation is submitted as a “Cumulative Thesis“ and contains a general synopsis (Part I) and three manuscripts (Part II) about the chemical ecology and pollination biology of Ceropegia . The major part of the research presented here was accomplished by myself under supervision of Univ.-Prof. Dr. Stefan Dötterl (Universities of Bayreuth and Salzburg) and PD Dr. -
Cognitive Mechanisms Underlying Responses to Sperm Competition in Drosophila Melanogaster
Cognitive mechanisms underlying responses to sperm competition in Drosophila melanogaster James Luke Rouse Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds School of Biology November 2016 The candidate confirms that the work submitted is his/her own, except where work which has formed part of jointly-authored publications has been included. The contribution of the candidate and the other authors to this work has been explicitly indicated below. The candidate confirms that appropriate credit has been given within the thesis where reference has been made to the work of others. Jointly authored publications Rouse, J. Bretman, A. (2016) Exposure time to rivals and sensory cues affect how quickly males respond to changes in sperm competition threat, Animal Behaviour, 122, 1-8 All experimental work was carried out by the author of this thesis; manuscript preparation was jointly shared between the authors This copy has been supplied on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement. © 2016 The University of Leeds and James Luke Rouse ii Acknowledgments I doubt many people will read this Thesis too closely, but from personal experience I know the acknowledgments are scrutinised, so I better make them good. First and foremost, I would like to thank my supervisor Amanda for providing me with the opportunity to perform this work. From helping me understand statistics as a baby-faced undergraduate she has encouraged and cajoled me to the baby-faced 24 year old I am today. -
Genome Size Evolution Differs Between Drosophila Subgenera with Striking Differences in Male and Female Genome Size in Sophophora
INVESTIGATION Genome Size Evolution Differs Between Drosophila Subgenera with Striking Differences in Male and Female Genome Size in Sophophora Carl E. Hjelmen,*,†,1 Heath Blackmon,† V. Renee Holmes,* Crystal G. Burrus,† and J. Spencer Johnston* *Department of Biology and †Department of Entomology, Texas A&M University, College Station, TX 77843 ORCID IDs: 0000-0003-3061-6458 (C.E.H.); 0000-0002-5433-4036 (H.B.); 0000-0002-1034-3707 (V.R.H.); 0000-0003-4792-2945 (J.S.J.) ABSTRACT Genome size varies across the tree of life, with no clear correlation to organismal complexity or KEYWORDS coding sequence, but with differences in non-coding regions. Phylogenetic methods have recently been Genome size incorporated to further disentangle this enigma, yet most of these studies have focused on widely diverged sex chromosome species. Few have compared patterns of genome size change in closely related species with known Drosophila structural differences in the genome. As a consequence, the relationship between genome size and phylogenetic differences in chromosome number or inter-sexual differences attributed to XY systems are largely comparative unstudied. We hypothesize that structural differences associated with chromosome number and X-Y methods chromosome differentiation, should result in differing rates and patterns of genome size change. In this study, we utilize the subgenera within the Drosophila to ask if patterns and rates of genome size change differ between closely related species with differences in chromosome numbers and states of the XY system. Genome sizes for males and females of 152 species are used to answer these questions (with 92 newly added or updated estimates). -
Cold Acclimation Conditions Constrain Plastic Responses for Resistance to Cold and Starvation in Drosophila Immigrans
© 2018. Published by The Company of Biologists Ltd | Biology Open (2018) 7, bio034447. doi:10.1242/bio.034447 RESEARCH ARTICLE Cold acclimation conditions constrain plastic responses for resistance to cold and starvation in Drosophila immigrans Ankita Pathak1, Ashok Munjal1 and Ravi Parkash2,* ABSTRACT 2007; Colinet et al., 2012). Colder environments are also associated In montane Drosophila species, cold-induced plastic changes in with desiccating conditions. Some studies have suggested a energy metabolites are likely developed to cope with cold and physiological link between plastic responses to cold and drought starvation stress. Adult Drosophila immigrans reared at 15°C were i.e. in freeze-tolerant gall fly Eurosta solidaginis (Irwin and Lee, acclimated at 0°C or 7°C for durations of up to 6 days (fed or unfed 2002; Williams and Lee, 2008; Levis et al., 2012); in Belgica conditions). Such flies were tested for plastic changes in resistance to antarctica (Benoit et al., 2009) and in D. immigrans (Tamang et al., cold or starvation stress as well as for possible accumulation and 2017). In the gall fly E. solidaginis, cold-induced changes include utilization of four energy metabolites (body lipids, proline, trehalose increases in the amount and composition of cuticular lipids to and glycogen). Adults acclimated at 7°C revealed a greater increase decrease water loss; and accumulation of cryoprotectants to reduce in cold tolerance than flies acclimated at 0°C. Different durations of the detrimental effects of cold on cellular membranes and proteins cold acclimation at 7°C led to increased level of body lipids only in fed (Nelson and Lee, 2004; Lee, 2010; Gantz and Lee, 2015). -
Evidence for No Sexual Isolation Between Drosophila Albomicans and D.Nasuta
Evidence for no sexual isolation between Drosophila albomicans and D. nasuta Yong-Kyu Kim1,3, Dennis R. Phillips2 & Yun Tao1 1Department of Biology, Emory University, Atlanta, Georgia 30322 2Department of Chemistry, University of Georgia, Athens, Georgia 30602 3Present address: Howard Hughes Medical Institute, Janelia Farm Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147 Keywords Abstract Courtship, cuticular hydrocarbons, D. albomicans, D. nasuta, mating behavior, Sexual isolation, the reduced tendency to mate, is one of the reproductive barri- speciation. ers that prevent gene flow between different species. Various species-specific sig- nals during courtship contribute to sexual isolation between species. Drosophila Correspondence albomicans and D. nasuta are closely related species of the nasuta subgroup Yong-Kyu Kim, Howard Hughes Medical within the Drosophila immigrans group and are distributed in allopatry. We Institute, Janelia Farm Research Campus, analyzed mating behavior and courtship as well as cuticular hydrocarbon 19700 Helix Drive, Ashburn, VA 20147. profiles within and between species. Here, we report that these two species Tel: (571) 209-4180; Fax: (571) 209-4941; E-mail: [email protected] randomly mated with each other. We did not observe any sexual isolation between species or between strains within species by multiple-choice tests. Significant Funding Information difference in the courtship index was detected between these two species, but This study was supported by National males and females of both species showed no discrimination against heterospec- Institutes of Health R01 HD060679. ific partners. Significant quantitative variations in cuticular hydrocarbons between these two species were also found, but the cuticular hydrocarbons Received: 18 February 2013; Revised: 22 April 2013; Accepted: 1 May 2013 appear to play a negligible role in both courtship and sexual isolation between these two species. -
Genetics on the Fly: a Primer on the Drosophila Model System
GENETICS | PRIMER Genetics on the Fly: A Primer on the Drosophila Model System Karen G. Hales,*,1 Christopher A. Korey,† Amanda M. Larracuente,‡ and David M. Roberts§ *Department of Biology, Davidson College, Davidson North Carolina 28035, †Biology Department, College of Charleston, Charleston, South Carolina 29424, ‡Department of Biology, University of Rochester, Rochester, New York 14627, and §Biology Department, Franklin and Marshall College, Lancaster, Pennsylvania 17604 ABSTRACT Fruit flies of the genus Drosophila have been an attractive and effective genetic model organism since Thomas Hunt Morgan and colleagues made seminal discoveries with them a century ago. Work with Drosophila has enabled dramatic advances in cell and developmental biology, neurobiology and behavior, molecular biology, evolutionary and population genetics, and other fields. With more tissue types and observable behaviors than in other short-generation model organisms, and with vast genome data available for many species within the genus, the fly’s tractable complexity will continue to enable exciting opportunities to explore mechanisms of complex developmental programs, behaviors, and broader evolutionary questions. This primer describes the organism’s natural history, the features of sequenced genomes within the genus, the wide range of available genetic tools and online resources, the types of biological questions Drosophila can help address, and historical milestones. KEYWORDS Drosophila; development; comparative genomics; model organism; TABLE OF CONTENTS