TNK2 Tyrosine Kinase: Molecular Signaling and Evolving Role in Cancers
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Mutation-Specific and Common Phosphotyrosine Signatures of KRAS G12D and G13D Alleles Anticipated Graduation August 1St, 2018
MUTATION-SPECIFIC AND COMMON PHOSPHOTYROSINE SIGNATURES OF KRAS G12D AND G13D ALLELES by Raiha Tahir A dissertation submitted to The Johns Hopkins University in conformity with the requirement of the degree of Doctor of Philosophy Baltimore, MD August 2018 © 2018 Raiha Tahir All Rights Reserved ABSTRACT KRAS is one of the most frequently mutated genes across all cancer subtypes. Two of the most frequent oncogenic KRAS mutations observed in patients result in glycine to aspartic acid substitution at either codon 12 (G12D) or 13 (G13D). Although the biochemical differences between these two predominant mutations are not fully understood, distinct clinical features of the resulting tumors suggest involvement of disparate signaling mechanisms. When we compared the global phosphotyrosine proteomic profiles of isogenic colorectal cancer cell lines bearing either G12D or G13D KRAS mutations, we observed both shared as well as unique signaling events induced by the two KRAS mutations. Remarkably, while the G12D mutation led to an increase in membrane proximal and adherens junction signaling, the G13D mutation led to activation of signaling molecules such as non-receptor tyrosine kinases, MAPK kinases and regulators of metabolic processes. The importance of one of the cell surface molecules, MPZL1, which found to be hyperphosphorylated in G12D cells, was confirmed by cellular assays as its knockdown led to a decrease in proliferation of G12D but not G13D expressing cells. Overall, our study reveals important signaling differences across two common KRAS mutations and highlights the utility of our approach to systematically dissect the subtle differences between related oncogenic mutants and potentially lead to individualized treatments. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Systematic Detection of Divergent Brain Protein-Coding Genes in Human Evolution
bioRxiv preprint doi: https://doi.org/10.1101/658658; this version posted January 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Title: Systematic detection of divergent brain protein-coding genes in human evolution 2 and their roles in cognition 3 Short title: Divergent brain protein-coding genes in human evolution 4 5 Guillaume Dumasa, Simon Malesysa and Thomas Bourgerona 6 a Human Genetics and Cognitive Functions, Institut Pasteur, UMR3571 CNRS, Université de Paris, Paris, 7 (75015) France 8 9 10 Corresponding author: 11 Guillaume Dumas 12 Human Genetics and Cognitive Functions 13 Institut Pasteur 14 75015 Paris, France 15 Phone: +33 6 28 25 56 65 16 [email protected] Dumas, Malesys and Bourgeron 1 of 37 bioRxiv preprint doi: https://doi.org/10.1101/658658; this version posted January 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 17 Abstract 18 The human brain differs from that of other primates, but the genetic basis of these differences 19 remains unclear. We investigated the evolutionary pressures acting on almost all human 20 protein-coding genes (N=11,667; 1:1 orthologs in primates) on the basis of their divergence 21 from those of early hominins, such as Neanderthals, and non-human primates. -
Src-Family Kinases Impact Prognosis and Targeted Therapy in Flt3-ITD+ Acute Myeloid Leukemia
Src-Family Kinases Impact Prognosis and Targeted Therapy in Flt3-ITD+ Acute Myeloid Leukemia Title Page by Ravi K. Patel Bachelor of Science, University of Minnesota, 2013 Submitted to the Graduate Faculty of School of Medicine in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Pittsburgh 2019 Commi ttee Membership Pa UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE Commi ttee Membership Page This dissertation was presented by Ravi K. Patel It was defended on May 31, 2019 and approved by Qiming (Jane) Wang, Associate Professor Pharmacology and Chemical Biology Vaughn S. Cooper, Professor of Microbiology and Molecular Genetics Adrian Lee, Professor of Pharmacology and Chemical Biology Laura Stabile, Research Associate Professor of Pharmacology and Chemical Biology Thomas E. Smithgall, Dissertation Director, Professor and Chair of Microbiology and Molecular Genetics ii Copyright © by Ravi K. Patel 2019 iii Abstract Src-Family Kinases Play an Important Role in Flt3-ITD Acute Myeloid Leukemia Prognosis and Drug Efficacy Ravi K. Patel, PhD University of Pittsburgh, 2019 Abstract Acute myelogenous leukemia (AML) is a disease characterized by undifferentiated bone-marrow progenitor cells dominating the bone marrow. Currently the five-year survival rate for AML patients is 27.4 percent. Meanwhile the standard of care for most AML patients has not changed for nearly 50 years. We now know that AML is a genetically heterogeneous disease and therefore it is unlikely that all AML patients will respond to therapy the same way. Upregulation of protein-tyrosine kinase signaling pathways is one common feature of some AML tumors, offering opportunities for targeted therapy. -
Supplementary Table 1. in Vitro Side Effect Profiling Study for LDN/OSU-0212320. Neurotransmitter Related Steroids
Supplementary Table 1. In vitro side effect profiling study for LDN/OSU-0212320. Percent Inhibition Receptor 10 µM Neurotransmitter Related Adenosine, Non-selective 7.29% Adrenergic, Alpha 1, Non-selective 24.98% Adrenergic, Alpha 2, Non-selective 27.18% Adrenergic, Beta, Non-selective -20.94% Dopamine Transporter 8.69% Dopamine, D1 (h) 8.48% Dopamine, D2s (h) 4.06% GABA A, Agonist Site -16.15% GABA A, BDZ, alpha 1 site 12.73% GABA-B 13.60% Glutamate, AMPA Site (Ionotropic) 12.06% Glutamate, Kainate Site (Ionotropic) -1.03% Glutamate, NMDA Agonist Site (Ionotropic) 0.12% Glutamate, NMDA, Glycine (Stry-insens Site) 9.84% (Ionotropic) Glycine, Strychnine-sensitive 0.99% Histamine, H1 -5.54% Histamine, H2 16.54% Histamine, H3 4.80% Melatonin, Non-selective -5.54% Muscarinic, M1 (hr) -1.88% Muscarinic, M2 (h) 0.82% Muscarinic, Non-selective, Central 29.04% Muscarinic, Non-selective, Peripheral 0.29% Nicotinic, Neuronal (-BnTx insensitive) 7.85% Norepinephrine Transporter 2.87% Opioid, Non-selective -0.09% Opioid, Orphanin, ORL1 (h) 11.55% Serotonin Transporter -3.02% Serotonin, Non-selective 26.33% Sigma, Non-Selective 10.19% Steroids Estrogen 11.16% 1 Percent Inhibition Receptor 10 µM Testosterone (cytosolic) (h) 12.50% Ion Channels Calcium Channel, Type L (Dihydropyridine Site) 43.18% Calcium Channel, Type N 4.15% Potassium Channel, ATP-Sensitive -4.05% Potassium Channel, Ca2+ Act., VI 17.80% Potassium Channel, I(Kr) (hERG) (h) -6.44% Sodium, Site 2 -0.39% Second Messengers Nitric Oxide, NOS (Neuronal-Binding) -17.09% Prostaglandins Leukotriene, -
A Multi-Exon Deletion Within WWOX Is Associated with a 46,XY Disorder of Sex
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Ghent University Academic Bibliography ͳ A multi-exon deletion within WWOX is associated with a 46,XY Disorder of Sex ʹ Development. ͵ Ͷ Stefan White1,2, Jacqueline Hewitt1,3, Erin Turbitt1, Yvonne van der Zwan4, RemKo ͷ Hersmus4, Sten Drop4, Peter Koopman5, Vincent Harley6, Martine Cools7, Leendert Looijenga4, Andrew Sinclair1,3 ͺ 1. Murdoch Childrens Research Institute, Royal Childrens Hospital, Melbourne, VIC, ͻ Australia ͳͲ 2. Monash Institute of Medical Research, Melbourne, VIC, Australia ͳͳ 3. The University of Melbourne, Melbourne, VIC, Australia ͳʹ 4. Erasmus MC-University Medical Center, Rotterdam, The Netherlands ͳ͵ 5. Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, ͳͶ Australia ͳͷ 6. Prince Henrys Institute, Melbourne, VIC, Australia ͳ 7. University Hospital Ghent, Ghent, Belgium ͳ ͳͺ Corresponding author: ͳͻ Dr Stefan White ʹͲ Monash Institute of Medical Research ʹͳ 27-31 Wright Street ʹʹ Clayton VIC 3168 ʹ͵ AUSTRALIA ʹͶ Email [email protected] ʹͷ Tel +61 3 9902 4812 ʹ Fax +61 3 9594 7114 ʹ Running title: WWOX and Disorders of Sex Development ʹͺ ʹͻ Abstract ͵Ͳ Disorders of sex development (DSD) are congenital conditions where chromosomal, ͵ͳ gonad or genital development is atypical. In a significant proportion of 46,XY DSD ͵ʹ cases it is not possible to identify a causative mutation, maKing genetic counseling ͵͵ difficult and potentially hindering optimal treatment. We present here the analysis of a ͵Ͷ 46,XY DSD patient that presented at birth with ambiguous genitalia. Histological ͵ͷ analysis of the surgically-removed gonads showed bilateral undifferentiated gonadal ͵ tissue and immature testis, both containing malignant germ cells. -
1 Characterization of Wwox Expression and Function in Canine
Characterization of Wwox Expression and Function in Canine Mast Cell Tumors and Malignant Mast Cell Lines THESIS Presented in Partial Fulfillment of the Requirements for the Degree Master of Science in the Graduate School of The Ohio State University By Rebecca Lynn Makii Graduate Program in Comparative and Veterinary Medicine The Ohio State University 2020 Master’s Examination Committee Joelle Fenger, DVM, PhD, DACVIM, Advisor Eric Green, DVM, DACVR Ryan Jennings, DVM, PhD, DACVP 1 Copyrighted by Rebecca Lynn Makii 2020 2 Abstract Mast cell tumors (MCT) are the most common skin tumor in dogs with behavior varying from benign to aggressive, metastatic disease. While activating mutations in the receptor tyrosine kinase KIT (c-KIT) have been identified in up to 30% of high-grade MCTs, the genetic alterations driving tumorigenesis in the 70% of MCTs that do not possess c-KIT mutations remains unclear. The WW domain-containing oxidoreductase (WWOX) tumor suppressor gene is frequently lost or attenuated in many human cancers and cancer cell lines and data suggest that loss of WWOX impedes DNA damage response (DDR) and repair leading to genomic instability. The purpose of this study was to characterize WWOX expression in spontaneous canine mast MCTs and mastocytoma cell lines and begin to define the functional consequences of WWOX inactivation on mast cell viability and clonogenic survival in response to double-stranded DNA (dsDNA) damaging agents. qRT-PCR and Western blotting showed that WWOX is decreased in MC lines and primary MCTs compared to bone marrow-cultured MCs, suggesting that loss of WWOX is a frequent event in this disease. -
TRK Inhibitors: Tissue-Agnostic Anti-Cancer Drugs
pharmaceuticals Review TRK Inhibitors: Tissue-Agnostic Anti-Cancer Drugs Sun-Young Han Research Institute of Pharmaceutical Sciences and College of Pharmacy, Gyeongsang National University, Jinju-si 52828, Korea; [email protected] Abstract: Recently, two tropomycin receptor kinase (Trk) inhibitors, larotrectinib and entrectinib, have been approved for Trk fusion-positive cancer patients. Clinical trials for larotrectinib and entrectinib were performed with patients selected based on the presence of Trk fusion, regardless of cancer type. This unique approach, called tissue-agnostic development, expedited the process of Trk inhibitor development. In the present review, the development processes of larotrectinib and entrectinib have been described, along with discussion on other Trk inhibitors currently in clinical trials. The on-target effects of Trk inhibitors in Trk signaling exhibit adverse effects on the central nervous system, such as withdrawal pain, weight gain, and dizziness. A next generation sequencing-based method has been approved for companion diagnostics of larotrectinib, which can detect various types of Trk fusions in tumor samples. With the adoption of the tissue-agnostic approach, the development of Trk inhibitors has been accelerated. Keywords: Trk; NTRK; tissue-agnostic; larotrectinib; entrectinib; Trk fusion 1. Introduction Citation: Han, S.-Y. TRK Inhibitors: Tropomyosin receptor kinases (Trk) are tyrosine kinases encoded by neurotrophic Tissue-Agnostic Anti-Cancer Drugs. tyrosine/tropomyosin receptor kinase (NTRK) genes [1]. Chromosomal rearrangement of Pharmaceuticals 2021, 14, 632. https:// NTRK genes is found in cancer tissues [2]. The resulting fusion proteins containing part of doi.org/10.3390/ph14070632 the Trk protein have a constitutively active form of kinase that transduces deregulating signals. -
HSP90 Is Necessary for the ACK1-Dependent Phosphorylation of STAT1 and MARK STAT3
Cellular Signalling 39 (2017) 9–17 Contents lists available at ScienceDirect Cellular Signalling journal homepage: www.elsevier.com/locate/cellsig HSP90 is necessary for the ACK1-dependent phosphorylation of STAT1 and MARK STAT3 Nisintha Mahendrarajaha, Marina E. Borisovab, Sigrid Reichardtc, Maren Godmannc, Andreas Sellmerd, Siavosh Mahboobid, Andrea Haitele, Katharina Schmidf, Lukas Kennere,g,h, ⁎ Thorsten Heinzelc, Petra Belib, Oliver H. Krämera, a Department of Toxicology, University Medical Center, Obere Zahlbacher Str. 67, 55131 Mainz, Germany b Institute of Molecular Biology (IMB), Ackermannweg 4, 55128 Mainz, Germany c Center for Molecular Biomedicine (CMB), Institute for Biochemistry, Friedrich-Schiller University Jena, Hans-Knöll Str. 2, 07745 Jena, Germany d Institute of Pharmacy, Faculty of Chemistry and Pharmacy, University of Regensburg, 93040 Regensburg, Germany e Department of Pathology, Medical University of Vienna, Waehringer Guertel 18-20, 1090 Vienna, Austria f Institute of Anatomy and Experimental Morphology, University of Hamburg-Eppendorf, Martinistraße 52, 20251 Hamburg, Germany g Department of Laboratory Animal Pathology, University of Veterinary Medicine, Veterinaerplatz 1, 1210 Vienna, Austria h Ludwig Boltzmann Institute for Cancer Research, Waehringerstrasse 13A, 1090 Vienna, Austria ARTICLE INFO ABSTRACT Keywords: Signal transducers and activators of transcription (STATs) are latent, cytoplasmic transcription factors. Janus ACK1 kinases (JAKs) and activated CDC42-associated kinase-1 (ACK1/TNK2) catalyse the phosphorylation of STAT1 HSP90 and the expression of its target genes. Here we demonstrate that catalytically active ACK1 promotes the phos- Lung cancer phorylation and nuclear accumulation of STAT1 in transformed kidney cells. These processes are associated with SIAH2 STAT1-dependent gene expression and an interaction between endogenous STAT1 and ACK1. -
The Non-Receptor Tyrosine Kinase TNK2/ACK1 Is a Novel Therapeutic Target in Triple Negative Breast Cancer
www.impactjournals.com/oncotarget/ Oncotarget, 2017, Vol. 8, (No. 2), pp: 2971-2983 Research Paper The non-receptor tyrosine kinase TNK2/ACK1 is a novel therapeutic target in triple negative breast cancer Xinyan Wu1,2,*, Muhammad Saddiq Zahari1,2,*, Santosh Renuse1,2,5, Dhanashree S. Kelkar1,2, Mustafa A. Barbhuiya2, Pamela L. Rojas1,2, Vered Stearns3, Edward Gabrielson3,4, Pavani Malla6, Saraswati Sukumar3, Nupam P. Mahajan6,7, Akhilesh Pandey1,2,3,4 1Department of Biological Chemistry, Johns Hopkins University School of Medicine Baltimore, MD 21205, U.S.A 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine Baltimore, MD 21205, U.S.A 3Department of Oncology, Johns Hopkins University School of Medicine Baltimore, MD 21205, U.S.A 4Department of Pathology, Johns Hopkins University School of Medicine Baltimore, MD 21205, U.S.A 5Institute of Bioinformatics, International Technology Park, Bangalore, 560066, India 6Department of Drug Discovery, Moffitt Cancer Center, Tampa, FL 33612, U.S.A 7Department of Oncologic Sciences, University of South Florida, Tampa, FL 33612, U.S.A *These authors have contributed equally to this work Correspondence to: Xinyan Wu, email: [email protected] Nupam P. Mahajan, email: [email protected] Akhilesh Pandey, email: [email protected] Keywords: TNK2, triple negative breast cancer, tyrosine kinase, phosphorylation Received: March 11, 2016 Accepted: October 10, 2016 Published: November 25, 2016 ABSTRACT Breast cancer is the most prevalent cancer in women worldwide. About 15-20% of all breast cancers do not express estrogen receptor, progesterone receptor or HER2 receptor and hence are collectively classified as triple negative breast cancer (TNBC). -
Abl P210 and P190 Kinases in Leukemia Cells Defined By
OPEN Leukemia (2017) 31, 1502–1512 www.nature.com/leu ORIGINAL ARTICLE Differential signaling networks of Bcr–Abl p210 and p190 kinases in leukemia cells defined by functional proteomics S Reckel1, R Hamelin2, S Georgeon1, F Armand2, Q Jolliet2, D Chiappe2, M Moniatte2 and O Hantschel1 The two major isoforms of the oncogenic Bcr–Abl tyrosine kinase, p210 and p190, are expressed upon the Philadelphia chromosome translocation. p210 is the hallmark of chronic myelogenous leukemia, whereas p190 occurs in the majority of B-cell acute lymphoblastic leukemia. Differences in protein interactions and activated signaling pathways that may be associated with the different diseases driven by p210 and p190 are unknown. We have performed a quantitative comparative proteomics study of p210 and p190. Strong differences in the interactome and tyrosine phosphoproteome were found and validated. Whereas the AP2 adaptor complex that regulates clathrin-mediated endocytosis interacts preferentially with p190, the phosphatase Sts1 is enriched with p210. Stronger activation of the Stat5 transcription factor and the Erk1/2 kinases is observed with p210, whereas Lyn kinase is activated by p190. Our findings provide a more coherent understanding of Bcr–Abl signaling, mechanisms of leukemic transformation, resulting disease pathobiology and responses to kinase inhibitors. Leukemia (2017) 31, 1502–1512; doi:10.1038/leu.2017.36 INTRODUCTION experimental conditions, the expression of p190 lead to a disease The Bcr–Abl kinase and its inhibitors (imatinib and successors) are with a shorter latency and more B-ALL, whereas p210 mice 9,11–13 a paradigm for targeted cancer therapy.1 Bcr–Abl is a constitu- developed CML-like leukemias. -
Amplification of the Human Epidermal Growth Factor Receptor 2 (HER2) Gene Is Associated with a Microsatellite Stable Status in Chinese Gastric Cancer Patients
387 Original Article Amplification of the human epidermal growth factor receptor 2 (HER2) gene is associated with a microsatellite stable status in Chinese gastric cancer patients He Huang1#, Zhengkun Wang2#, Yi Li2, Qun Zhao3, Zhaojian Niu2 1Department of Gastrointestinal Surgery, The First Hospital of Shanxi Medical University, Shanxi, China; 2Department of Gastrointestinal Surgery, The Affiliated Hospital of Qingdao University, Qingdao, China; 3Department of Gastrosurgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang, China Contributions: I) Conception and design: Z Niu, Q Zhao, H Huang; (II) Administrative support: Z Niu, H Huang, Z Wang; (III) Provision of study materials or patients: All authors; (IV) Collection and assembly of data: Z Wang, Q Zhao; (V) Data analysis and interpretation: Z Niu, H Huang; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors. #These authors contributed equally to this work. Correspondence to: Zhaojian Niu. Department of Gastrointestinal Surgery, The Affiliated Hospital of Qingdao University, No. 16, Jiangsu Road, Shinan District, Qingdao 260003, China. Email: [email protected]; Qun Zhao. Department of Gastrosurgery, The Fourth Hospital of Hebei Medical University, No. 12 Jiankang Road, Shijiazhuang 050011, China. Email: [email protected]. Background: Gastric cancer (GC) is one of the most common cancers worldwide. However, little is known about the combination of HER2 amplification and microsatellite instability (MSI) status in GC. This study aimed to analyze the correlation of HER2 amplification with microsatellite instability (MSI) status, clinical characteristics, and the tumor mutational burden (TMB) of patients. Methods: A total of 192 gastric cancer (GC) patients were enrolled in this cohort. To analyze genomic alterations (GAs), deep sequencing was performed on 450 target cancer genes.