(Piciformes: Lybiidae) Despite Millions of Years of Divergence
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Geographic Cline Analysis As a Tool for Studying Genome-Wide Variation: a Case Study of Pollinator-Mediated Divergence in a Monkeyflower
bioRxiv preprint doi: https://doi.org/10.1101/036954; this version posted January 15, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Geographic cline analysis as a tool for studying genome-wide variation: a case study of pollinator-mediated divergence in a monkeyflower Sean Stankowski1,2, James M. Sobel3 and Matthew A. Streisfeld1 1Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, United States of America 2Corresponding author E-mail: [email protected] 3Department of Biological Sciences, Binghamton University, Binghamton, New York, United States of America Keywords: ecotype formation, hybrid zone, Mimulus aurantiacus, pollinator isolation, reproductive isolation Running title: Genomics of pollinator-mediated divergence in a monkeyflower For consideration in the MEC special issue: The molecular basis of adaptation and ecological speciation - integrating genomic and molecular approaches; section: Ecological speciation genomics: advances and limitations 1 bioRxiv preprint doi: https://doi.org/10.1101/036954; this version posted January 15, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract A major goal of speciation research is to reveal the genomic signatures that accompany the speciation process. Genome scans are routinely used to explore genome-wide variation and identify highly differentiated loci that may contribute to ecological divergence, but they do not incorporate spatial, phenotypic, or environmental data that might enhance outlier detection. -
Recent Hybrids Recapitulate Ancient Hybrid Outcomes
Utah State University DigitalCommons@USU Ecology Center Publications Ecology Center 5-1-2020 Recent Hybrids Recapitulate Ancient Hybrid Outcomes Samridhi Chaturvedi Utah State University Lauren K. Lucas Utah State University C. Alex Buerkle University of Wyoming James A. Fordyce University of Tennessee, Knoxville Matthew L. Forister University of Nevada, Reno Chris C. Nice Texas State University See next page for additional authors Follow this and additional works at: https://digitalcommons.usu.edu/eco_pubs Part of the Ecology and Evolutionary Biology Commons Recommended Citation Chaturvedi, S., Lucas, L.K., Buerkle, C.A. et al. Recent hybrids recapitulate ancient hybrid outcomes. Nat Commun 11, 2179 (2020). https://doi.org/10.1038/s41467-020-15641-x This Article is brought to you for free and open access by the Ecology Center at DigitalCommons@USU. It has been accepted for inclusion in Ecology Center Publications by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. Authors Samridhi Chaturvedi, Lauren K. Lucas, C. Alex Buerkle, James A. Fordyce, Matthew L. Forister, Chris C. Nice, and Zachariah Gompert This article is available at DigitalCommons@USU: https://digitalcommons.usu.edu/eco_pubs/122 ARTICLE https://doi.org/10.1038/s41467-020-15641-x OPEN Recent hybrids recapitulate ancient hybrid outcomes Samridhi Chaturvedi1,2,3, Lauren K. Lucas1, C. Alex Buerkle 4, James A. Fordyce5, Matthew L. Forister6, ✉ Chris C. Nice7 & Zachariah Gompert1,2 Genomic outcomes of hybridization depend on selection and recombination in hybrids. Whether these processes have similar effects on hybrid genome composition in con- 1234567890():,; temporary hybrid zones versus ancient hybrid lineages is unknown. -
Avibase Page 1Of 6
Avibase Page 1of 6 Col Location Date Start time Duration Distance Avibase - Bird Checklists of the World 1 Country or region: Bwindi Impenetrable National Park 2 Number of species: 588 3 Number of endemics: 0 4 Number of breeding endemics: 0 5 Number of introduced species: 1 Recommended citation: Lepage, D. 2021. Checklist of the birds of Bwindi Impenetrable National Park. Avibase, the world bird database. Retrieved from .https://avibase.bsc- eoc.org/checklist.jsp?lang=EN®ion=ug04uu01&list=howardmoore&format=2 [12/05/2021]. Make your observations count! Submit your data to ebird.org - Legend: [x] accidental [ex] extirpated [EX] extinct [EW] extinct in the wild [E] endemic [e] endemic (country/region) Egyptian Goose Tambourine Dove Black Cuckoo Hottentot Teal Namaqua Dove African Cuckoo African Black Duck Montane Nightjar African Crake Red-billed Teal Mottled Spinetailed Swift Black Crake Comb Duck Cassin's Spinetailed Swift White-spotted Flufftail Helmeted Guineafowl Scarce Swift Buff-spotted Flufftail Crested Guineafowl African Palm Swift Red-chested Flufftail Blue Quail Alpine Swift African Finfoot Scaly Francolin Mottled Swift Grey Crowned Crane Red-necked Spurfowl White-rumped Swift Great Blue Turaco Handsome Francolin Horus Swift Eastern Grey Plantain-eater Crested Francolin Little Swift Bare-faced Go-away-bird Ring-necked Francolin African Swift Ruwenzori Turaco Little Grebe Common Swift Black-billed Turaco Speckled Pigeon Blue-headed Coucal Ross's Turaco Afep Pigeon White-browed Coucal Marabou African Olive Pigeon African Black -
Birding Tour to Ghana Specializing on Upper Guinea Forest 12–26 January 2018
Birding Tour to Ghana Specializing on Upper Guinea Forest 12–26 January 2018 Chocolate-backed Kingfisher, Ankasa Resource Reserve (Dan Casey photo) Participants: Jim Brown (Missoula, MT) Dan Casey (Billings and Somers, MT) Steve Feiner (Portland, OR) Bob & Carolyn Jones (Billings, MT) Diane Kook (Bend, OR) Judy Meredith (Bend, OR) Leaders: Paul Mensah, Jackson Owusu, & Jeff Marks Prepared by Jeff Marks Executive Director, Montana Bird Advocacy Birding Ghana, Montana Bird Advocacy, January 2018, Page 1 Tour Summary Our trip spanned latitudes from about 5° to 9.5°N and longitudes from about 3°W to the prime meridian. Weather was characterized by high cloud cover and haze, in part from Harmattan winds that blow from the northeast and carry particulates from the Sahara Desert. Temperatures were relatively pleasant as a result, and precipitation was almost nonexistent. Everyone stayed healthy, the AC on the bus functioned perfectly, the tropical fruits (i.e., bananas, mangos, papayas, and pineapples) that Paul and Jackson obtained from roadside sellers were exquisite and perfectly ripe, the meals and lodgings were passable, and the jokes from Jeff tolerable, for the most part. We detected 380 species of birds, including some that were heard but not seen. We did especially well with kingfishers, bee-eaters, greenbuls, and sunbirds. We observed 28 species of diurnal raptors, which is not a large number for this part of the world, but everyone was happy with the wonderful looks we obtained of species such as African Harrier-Hawk, African Cuckoo-Hawk, Hooded Vulture, White-headed Vulture, Bat Hawk (pair at nest!), Long-tailed Hawk, Red-chested Goshawk, Grasshopper Buzzard, African Hobby, and Lanner Falcon. -
Natural Selection Maintains a Singlelocus Leaf Shape Cline In
Molecular Ecology (2013) 22, 552–564 doi: 10.1111/mec.12057 Natural selection maintains a single-locus leaf shape cline in Ivyleaf morning glory, Ipomoea hederacea BRANDON E. CAMPITELLI* and JOHN R. STINCHCOMBE*† *Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks Street, Toronto, ON Canada M5S 3B2, †Center for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks Street, Toronto, ON M5S 3B2, Canada Abstract Clines in phenotypic traits with an underlying genetic basis potentially implicate natu- ral selection. However, neutral evolutionary processes such as random colonization, spatially restricted gene flow, and genetic drift could also result in similar spatial pat- terns, especially for single-locus traits because of their susceptibility to stochastic events. One way to distinguish between adaptive and neutral mechanisms is to com- pare the focal trait to neutral genetic loci to determine whether neutral loci demon- strate clinal variation (consistent with a neutral cline), or not. Ivyleaf morning glory, Ipomoea hederacea, exhibits a latitudinal cline for a Mendelian leaf shape polymor- phism in eastern North America, such that lobed genotypes dominate northern popula- tions and heart-shaped genotypes are restricted to southern populations. Here, we evaluate potential evolutionary mechanisms for this cline by first determining the allele frequencies at the leaf shape locus for 77 populations distributed throughout I. hederacea’s range and then comparing the geographical pattern at this locus to neu- tral amplified fragment length polymorphism (AFLP) loci. We detected both significant clinal variation and high genetic differentiation at the leaf shape locus across all popu- lations. In contrast, 99% of the putatively neutral loci do not display clinal variation, and I. -
The Dazzling Diversity of Avian Feet I I Text Lisa Nupen Anisodactyl
BIOLOGY insight into the birds’ different modes of life. THE BONES IN THE TOES Birds’ feet are not only used for n almost all birds, the number of bones locomotion (walking or running, Iin each toe is preserved: there are two swimming, climbing), but they bones in the first toe (digit I), three bones serve other important functions in in the second toe (II), four in the third (III) perching, foraging, preening, re- and five in the fourth (IV). Therefore, the production and thermoregulation. identity of a toe (I to IV) can be determined Because of this, the structure of a quite reliably from the number of bones in bird’s foot often provides insight it. When evolutionary toe-loss occurs, this into the species’ ecology. Often, makes it possible to identify which digit distantly related species have con- has been lost. verged on similar foot types when adapting to particular environ- ments. For example, the four fully demands of a particular niche or The first, and seemingly ances- webbed, forward-pointing toes environment. The arrangement tral, configuration of birds’ toes – called totipalmate – of pelicans, of toes in lovebirds, barbets and – called anisodactyly – has three gannets and cormorants are an ad- cuckoos, for example, is differ- digits (numbered II, III and IV) aptation to their marine habitat. ent from that in passerines (such orientated forwards and digit I The closely related Shoebill as finches, shrikes or starlings) in (the ‘big toe’, or hallux) pointing does not have webbed feet, per- the same environment. The func- backwards. This arrangement is haps because of its wetland habi- tional reasons for differences in shared with theropod fossils and The toes of penguins tat, but the tropicbirds, which foot structure can be difficult to is the most common, being found (below left) and gan- fancy form their own relatively ancient explain. -
Mousebirds Tle Focus Has Been Placed Upon Them
at all, in private aviculture, and only a few zoos have them in their col1ec tions. According to the ISIS report of September 1998, Red-hacks are not to be found in any USA collections. This is unfortunate as all six species have been imported in the past although lit Mousebirds tle focus has been placed upon them. Hopeful1y this will change in the for the New Millennium upcoming years. Speckled Mousebirds by Kateri J. Davis, Sacramento, CA Speckled Mousebirds Colius striatus, also known as Bar-breasted or Striated, are the most common mousebirds in crops and frequent village gardens. USA private and zoological aviculture he word is slowly spreading; They are considered a pest bird by today. There are 17 subspecies, differ mousebirds make great many Africans and destroyed as such. ing mainly in color of the legs, eyes, T aviary birds and, surprising Luckily, so far none of the mousebird throat, and cheek patches or ear ly, great household pets. Although still species are endangered or listed on coverts. They have reddish brown body generally unknown, they are the up CITES even though some of them have plumage with dark barrings and a very and-coming pet bird of the new mil naturally small ranges. wide, long, stiff tail. Their feathering is lennium. They share many ofthe qual Mousebirds are not closely related to soft and easily damaged. They have a ities ofsmall pet parrots, but lack many any other bird species, although they soft chattering cal1 and are the most of their vices, which helps explain share traits with parrots. -
Kenyan Birding & Animal Safari Organized by Detroit Audubon and Silent Fliers of Kenya July 8Th to July 23Rd, 2019
Kenyan Birding & Animal Safari Organized by Detroit Audubon and Silent Fliers of Kenya July 8th to July 23rd, 2019 Kenya is a global biodiversity “hotspot”; however, it is not only famous for extraordinary viewing of charismatic megafauna (like elephants, lions, rhinos, hippos, cheetahs, leopards, giraffes, etc.), but it is also world-renowned as a bird watcher’s paradise. Located in the Rift Valley of East Africa, Kenya hosts 1054 species of birds--60% of the entire African birdlife--which are distributed in the most varied of habitats, ranging from tropical savannah and dry volcanic- shaped valleys to freshwater and brackish lakes to montane and rain forests. When added to the amazing bird life, the beauty of the volcanic and lava- sculpted landscapes in combination with the incredible concentration of iconic megafauna, the experience is truly breathtaking--that the Africa of movies (“Out of Africa”), books (“Born Free”) and documentaries (“For the Love of Elephants”) is right here in East Africa’s Great Rift Valley with its unparalleled diversity of iconic wildlife and equatorially-located ecosystems. Kenya is truly the destination of choice for the birdwatcher and naturalist. Karibu (“Welcome to”) Kenya! 1 Itinerary: Day 1: Arrival in Nairobi. Our guide will meet you at the airport and transfer you to your hotel. Overnight stay in Nairobi. Day 2: After an early breakfast, we will embark on a full day exploration of Nairobi National Park--Kenya’s first National Park. This “urban park,” located adjacent to one of Africa’s most populous cities, allows for the possibility of seeing the following species of birds; Olivaceous and Willow Warbler, African Water Rail, Wood Sandpiper, Great Egret, Red-backed and Lesser Grey Shrike, Rosy-breasted and Pangani Longclaw, Yellow-crowned Bishop, Jackson’s Widowbird, Saddle-billed Stork, Cardinal Quelea, Black-crowned Night- heron, Martial Eagle and several species of Cisticolas, in addition to many other unique species. -
Genetic Exchange Across a Hybrid Zone Within the Iberian Endemic
Molecular Ecology (2005) 14, 245–254 doi: 10.1111/j.1365-294X.2004.02390.x GeneticBlackwell Publishing, Ltd. exchange across a hybrid zone within the Iberian endemic golden-striped salamander, Chioglossa lusitanica F. SEQUEIRA,*† J. ALEXANDRINO,*§ S. ROCHA,* J. W. ARNTZEN*‡ and N. FERRAND*† *CIBIO/UP-Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, Rua Padre Armando Quintas, 4485–661 Vairão, Portugal, †Departamento de Zoologia e Antropologia, Faculdade de Ciências, Universidade do Porto, Praça Gomes Teixeira, 4099-002 Porto, Portugal, ‡National Museum of Natural History, PO Box 9517, 2300 RA Leiden, the Netherlands, §Museum of Vertebrate Zoology, University of California, Berkeley, 3101 Valley Life Science Building # 3160, Berkeley, CA 94720– 3160, USA Abstract The study of hybrid zones resulting from Pleistocene vicariance is central in examining the potential of genetically diverged evolutionary units either to introgress and merge or to proceed with further isolation. The hybrid zone between two mitochondrial lineages of Chioglossa lusitanica is located near the Mondego River in Central Portugal. We used mito- chondrial and nuclear diagnostic markers to conduct a formal statistical analysis of the Chioglossa hybrid zone in the context of tension zone theory. Key results are: (i) cline centres are not coincident for all markers, with average widths of ca. 2–15 km; (ii) heterozygote deficit was not observed across loci near the transect centre; (iii) associations of parental allele combinations (‘linkage disequilibrium’ R) were not detected either across loci or across the transect. These observations suggest that the Chioglossa hybrid zone is not a tension zone with strong selection against hybrids but instead one shaped mostly by neutral mixing. -
Plant-Frugivore Interactions in a Heterogeneous Forest Landscape of South Africa
Plant-frugivore interactions in a heterogeneous forest landscape of South Africa Dissertation In partial fulfilment of the requirements for the award of a Doctorate Degree in Natural Sciences (Dr. rer. nat) The Faculty of Biology, Philipps-University of Marburg Lackson Chama, MSc Sinazongwe (Zambia) June 2012, Marburg From the Faculty of Biology, Philipps-University Marburg als Dissertation am angenommen. Dekan: Prof. Dr. Paul Galland Erstgutachterin: Prof. Dr. N. Farwig Zweitgutachter: Prof. Dr. R. Brandl Tag der Disputation: 25th June 2012 Dedicated to my son, Mishila, who’s first two years on earth I was hardly part of, due to my commitment towards this work. Contents CHAPTER 1: GENERAL INTRODUCTION ..................................................................................................................... 3 EFFECTS OF HUMAN ACTIVITIES ON FOREST BIODIVERSITY ........................................................................................................ 4 PLANT-FRUGIVORE INTERACTIONS IN CHANGING LANDSCAPES .................................................................................................. 5 THE ROLE OF FUNCTIONAL DIVERSITY IN FRUGIVORE COMMUNITIES ........................................................................................... 5 EFFECTS OF SEED INGESTION BY FRUGIVOROUS BIRDS ON GERMINATION SUCCESS ........................................................................ 6 AIMS OF THE THESIS ......................................................................................................................................................... -
Leptosomiformes ~ Trogoniformes ~ Bucerotiformes ~ Piciformes
Birds of the World part 6 Afroaves The core landbirds originating in Africa TELLURAVES: AFROAVES – core landbirds originating in Africa (8 orders) • ORDER ACCIPITRIFORMES – hawks and allies (4 families, 265 species) – Family Cathartidae – New World vultures (7 species) – Family Sagittariidae – secretarybird (1 species) – Family Pandionidae – ospreys (2 species) – Family Accipitridae – kites, hawks, and eagles (255 species) • ORDER STRIGIFORMES – owls (2 families, 241 species) – Family Tytonidae – barn owls (19 species) – Family Strigidae – owls (222 species) • ORDER COLIIFORMES (1 family, 6 species) – Family Coliidae – mousebirds (6 species) • ORDER LEPTOSOMIFORMES (1 family, 1 species) – Family Leptosomidae – cuckoo-roller (1 species) • ORDER TROGONIFORMES (1 family, 43 species) – Family Trogonidae – trogons (43 species) • ORDER BUCEROTIFORMES – hornbills and hoopoes (4 families, 74 species) – Family Upupidae – hoopoes (4 species) – Family Phoeniculidae – wood hoopoes (9 species) – Family Bucorvidae – ground hornbills (2 species) – Family Bucerotidae – hornbills (59 species) • ORDER PICIFORMES – woodpeckers and allies (9 families, 443 species) – Family Galbulidae – jacamars (18 species) – Family Bucconidae – puffbirds (37 species) – Family Capitonidae – New World barbets (15 species) – Family Semnornithidae – toucan barbets (2 species) – Family Ramphastidae – toucans (46 species) – Family Megalaimidae – Asian barbets (32 species) – Family Lybiidae – African barbets (42 species) – Family Indicatoridae – honeyguides (17 species) – Family -
Microevolution: Species Concept Core Course: ZOOL3014 B.Sc. (Hons’): Vith Semester
Microevolution: Species concept Core course: ZOOL3014 B.Sc. (Hons’): VIth Semester Prof. Pranveer Singh Clines A cline is a geographic gradient in the frequency of a gene, or in the average value of a character Clines can arise for different reasons: • Natural selection favors a slightly different form along the gradient • It can also arise if two forms are adapted to different environments separated in space and migration (gene flow) takes place between them Term coined by Julian Huxley in 1838 Geographic variation normally exists in the form of a continuous cline A sudden change in gene or character frequency is called a stepped cline An important type of stepped cline is a hybrid zone, an area of contact between two different forms of a species at which hybridization takes place Drivers and evolution of clines Two populations with individuals moving between the populations to demonstrate gene flow Development of clines 1. Primary differentiation / Primary contact / Primary intergradation Primary differentiation is demonstrated using the peppered moth as an example, with a change in an environmental variable such as sooty coverage of trees imposing a selective pressure on a previously uniformly coloured moth population This causes the frequency of melanic morphs to increase the more soot there is on vegetation 2. Secondary contact / Secondary intergradation / Secondary introgression Secondary contact between two previously isolated populations Two previously isolated populations establish contact and therefore gene flow, creating an