SAGE: Software for Algebra and Geometry Experimentation
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Using Macaulay2 Effectively in Practice
Using Macaulay2 effectively in practice Mike Stillman ([email protected]) Department of Mathematics Cornell 22 July 2019 / IMA Sage/M2 Macaulay2: at a glance Project started in 1993, Dan Grayson and Mike Stillman. Open source. Key computations: Gr¨obnerbases, free resolutions, Hilbert functions and applications of these. Rings, Modules and Chain Complexes are first class objects. Language which is comfortable for mathematicians, yet powerful, expressive, and fun to program in. Now a community project Journal of Software for Algebra and Geometry (started in 2009. Now we handle: Macaulay2, Singular, Gap, Cocoa) (original editors: Greg Smith, Amelia Taylor). Strong community: including about 2 workshops per year. User contributed packages (about 200 so far). Each has doc and tests, is tested every night, and is distributed with M2. Lots of activity Over 2000 math papers refer to Macaulay2. History: 1976-1978 (My undergrad years at Urbana) E. Graham Evans: asked me to write a program to compute syzygies, from Hilbert's algorithm from 1890. Really didn't work on computers of the day (probably might still be an issue!). Instead: Did computation degree by degree, no finishing condition. Used Buchsbaum-Eisenbud \What makes a complex exact" (by hand!) to see if the resulting complex was exact. Winfried Bruns was there too. Very exciting time. History: 1978-1983 (My grad years, with Dave Bayer, at Harvard) History: 1978-1983 (My grad years, with Dave Bayer, at Harvard) I tried to do \real mathematics" but Dave Bayer (basically) rediscovered Groebner bases, and saw that they gave an algorithm for computing all syzygies. I got excited, dropped what I was doing, and we programmed (in Pascal), in less than one week, the first version of what would be Macaulay. -
Rapid Research with Computer Algebra Systems
doi: 10.21495/71-0-109 25th International Conference ENGINEERING MECHANICS 2019 Svratka, Czech Republic, 13 – 16 May 2019 RAPID RESEARCH WITH COMPUTER ALGEBRA SYSTEMS C. Fischer* Abstract: Computer algebra systems (CAS) are gaining popularity not only among young students and schol- ars but also as a tool for serious work. These highly complicated software systems, which used to just be regarded as toys for computer enthusiasts, have reached maturity. Nowadays such systems are available on a variety of computer platforms, starting from freely-available on-line services up to complex and expensive software packages. The aim of this review paper is to show some selected capabilities of CAS and point out some problems with their usage from the point of view of 25 years of experience. Keywords: Computer algebra system, Methodology, Wolfram Mathematica 1. Introduction The Wikipedia page (Wikipedia contributors, 2019a) defines CAS as a package comprising a set of algo- rithms for performing symbolic manipulations on algebraic objects, a language to implement them, and an environment in which to use the language. There are 35 different systems listed on the page, four of them discontinued. The oldest one, Reduce, was publicly released in 1968 (Hearn, 2005) and is still available as an open-source project. Maple (2019a) is among the most popular CAS. It was first publicly released in 1984 (Maple, 2019b) and is still popular, also among users in the Czech Republic. PTC Mathcad (2019) was published in 1986 in DOS as an engineering calculation solution, and gained popularity for its ability to work with typeset mathematical notation in combination with automatic computations. -
Research in Algebraic Geometry with Macaulay2
Research in Algebraic Geometry with Macaulay2 1 Macaulay2 a software system for research in algebraic geometry resultants the community, packages, the journal, and workshops 2 Tutorial the ideal of a monomial curve elimination: projecting the twisted cubic quotients and saturation 3 the package PHCpack.m2 solving polynomial systems numerically MCS 507 Lecture 39 Mathematical, Statistical and Scientific Software Jan Verschelde, 25 November 2019 Scientific Software (MCS 507) Macaulay2 L-39 25November2019 1/32 Research in Algebraic Geometry with Macaulay2 1 Macaulay2 a software system for research in algebraic geometry resultants the community, packages, the journal, and workshops 2 Tutorial the ideal of a monomial curve elimination: projecting the twisted cubic quotients and saturation 3 the package PHCpack.m2 solving polynomial systems numerically Scientific Software (MCS 507) Macaulay2 L-39 25November2019 2/32 Macaulay2 D. R. Grayson and M. E. Stillman: Macaulay2, a software system for research in algebraic geometry, available at https://faculty.math.illinois.edu/Macaulay2. Funded by the National Science Foundation since 1992. Its source is at https://github.com/Macaulay2/M2; licence: GNU GPL version 2 or 3; try it online at http://habanero.math.cornell.edu:3690. Several workshops are held each year. Packages extend the functionality. The Journal of Software for Algebra and Geometry (at https://msp.org/jsag) started its first volume in 2009. The SageMath interface to Macaulay2 requires its binary M2 to be installed on your computer. Scientific -
An Alternative Algorithm for Computing the Betti Table of a Monomial Ideal 3
AN ALTERNATIVE ALGORITHM FOR COMPUTING THE BETTI TABLE OF A MONOMIAL IDEAL MARIA-LAURA TORRENTE AND MATTEO VARBARO Abstract. In this paper we develop a new technique to compute the Betti table of a monomial ideal. We present a prototype implementation of the resulting algorithm and we perform numerical experiments suggesting a very promising efficiency. On the way of describing the method, we also prove new constraints on the shape of the possible Betti tables of a monomial ideal. 1. Introduction Since many years syzygies, and more generally free resolutions, are central in purely theo- retical aspects of algebraic geometry; more recently, after the connection between algebra and statistics have been initiated by Diaconis and Sturmfels in [DS98], free resolutions have also become an important tool in statistics (for instance, see [D11, SW09]). As a consequence, it is fundamental to have efficient algorithms to compute them. The usual approach uses Gr¨obner bases and exploits a result of Schreyer (for more details see [Sc80, Sc91] or [Ei95, Chapter 15, Section 5]). The packages for free resolutions of the most used computer algebra systems, like [Macaulay2, Singular, CoCoA], are based on these techniques. In this paper, we introduce a new algorithmic method to compute the minimal graded free resolution of any finitely generated graded module over a polynomial ring such that some (possibly non- minimal) graded free resolution is known a priori. We describe this method and we present the resulting algorithm in the case of monomial ideals in a polynomial ring, in which situ- ation we always have a starting nonminimal graded free resolution. -
Computations in Algebraic Geometry with Macaulay 2
Computations in algebraic geometry with Macaulay 2 Editors: D. Eisenbud, D. Grayson, M. Stillman, and B. Sturmfels Preface Systems of polynomial equations arise throughout mathematics, science, and engineering. Algebraic geometry provides powerful theoretical techniques for studying the qualitative and quantitative features of their solution sets. Re- cently developed algorithms have made theoretical aspects of the subject accessible to a broad range of mathematicians and scientists. The algorith- mic approach to the subject has two principal aims: developing new tools for research within mathematics, and providing new tools for modeling and solv- ing problems that arise in the sciences and engineering. A healthy synergy emerges, as new theorems yield new algorithms and emerging applications lead to new theoretical questions. This book presents algorithmic tools for algebraic geometry and experi- mental applications of them. It also introduces a software system in which the tools have been implemented and with which the experiments can be carried out. Macaulay 2 is a computer algebra system devoted to supporting research in algebraic geometry, commutative algebra, and their applications. The reader of this book will encounter Macaulay 2 in the context of concrete applications and practical computations in algebraic geometry. The expositions of the algorithmic tools presented here are designed to serve as a useful guide for those wishing to bring such tools to bear on their own problems. A wide range of mathematical scientists should find these expositions valuable. This includes both the users of other programs similar to Macaulay 2 (for example, Singular and CoCoA) and those who are not interested in explicit machine computations at all. -
About the Polynomial System Solve Facility of Axiom, Macsyma, Maple
Ab out the Polynomial System Solve Facility of Axiom, Macsyma, Maple, Mathematica, MuPAD, and Reduce Hans-Gert Grab e Institut fur Informatik, Universitat Leipzig, Germany February 23, 1998 In memoriam to Renate. Abstract We rep ort on some exp eriences with the general purp ose Computer Algebra Systems (CAS) Axiom, Macsyma, Maple, Mathematica, MuPAD, and Reduce solving systems of p olynomial equations and the way they present their solutions. This snapshot (taken in the spring 1996) of the current power of the di erent systems in a sp ecial area concentrates b oth on CPU-times and the quality of the output. 1 Intro duction Let S := k [x ;::: ;x ] be the p olynomial ring in the variables x ;::: ;x over the eld 1 n 1 n k and B := ff ;::: ;f g S be a nite system of p olynomials. Denote by I (B ) the 1 m ideal generated by these p olynomials. One of the ma jor tasks of constructive commutative n algebra is the derivation of information ab out the structure of Z (B ) := fa 2 k : 8 f 2 B such that f (a)=0g, the set of common zero es of the system B over the algebraic closure k of k . Splitting the system into smaller ones, solving them separately, and patching all solu- tions together is often a go o d guess for a quick solution of even highly nontrivial problems. This can b e done by several techniques, e.g. characteristic sets, resultants, the Grobner fac- torizer or some ad ho c metho ds. -
What Can Computer Algebraic Geometry Do Today?
What can computer Algebraic Geometry do today? Gregory G. Smith Wolfram Decker Mike Stillman 14 July 2015 Essential Questions ̭ What can be computed? ̭ What software is currently available? ̭ What would you like to compute? ̭ How should software advance your research? Basic Mathematical Types ̭ Polynomial Rings, Ideals, Modules, ̭ Varieties (affine, projective, toric, abstract), ̭ Sheaves, Divisors, Intersection Rings, ̭ Maps, Chain Complexes, Homology, ̭ Polyhedra, Graphs, Matroids, ̯ Established Geometric Tools ̭ Elimination, Blowups, Normalization, ̭ Rational maps, Working with divisors, ̭ Components, Parametrizing curves, ̭ Sheaf Cohomology, ঠ-modules, ̯ Emerging Geometric Tools ̭ Classification of singularities, ̭ Numerical algebraic geometry, ̭ ैक़௴Ь, Derived equivalences, ̭ Deformation theory,Positivity, ̯ Some Geometric Successes ̭ GEOGRAPHY OF SURFACES: exhibiting surfaces with given invariants ̭ BOIJ-SÖDERBERG: examples lead to new conjectures and theorems ̭ MODULI SPACES: computer aided proofs of unirationality Some Existing Software ̭ GAP,Macaulay2, SINGULAR, ̭ CoCoA, Magma, Sage, PARI, RISA/ASIR, ̭ Gfan, Polymake, Normaliz, 4ti2, ̭ Bertini, PHCpack, Schubert, Bergman, an idiosyncratic and incomplete list Effective Software ̭ USEABLE: documented examples ̭ MAINTAINABLE: includes tests, part of a larger distribution ̭ PUBLISHABLE: Journal of Software for Algebra and Geometry; www.j-sag.org ̭ CITATIONS: reference software Recent Developments in Singular Wolfram Decker Janko B¨ohm, Hans Sch¨onemann, Mathias Schulze Mohamed Barakat TU Kaiserslautern July 14, 2015 Wolfram Decker (TU-KL) Recent Developments in Singular July 14, 2015 1 / 24 commutative and non-commutative algebra, singularity theory, and with packages for convex and tropical geometry. It is free and open-source under the GNU General Public Licence. -
GNU Texmacs User Manual Joris Van Der Hoeven
GNU TeXmacs User Manual Joris van der Hoeven To cite this version: Joris van der Hoeven. GNU TeXmacs User Manual. 2013. hal-00785535 HAL Id: hal-00785535 https://hal.archives-ouvertes.fr/hal-00785535 Preprint submitted on 6 Feb 2013 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. GNU TEXMACS user manual Joris van der Hoeven & others Table of contents 1. Getting started ...................................... 11 1.1. Conventionsforthismanual . .......... 11 Menuentries ..................................... 11 Keyboardmodifiers ................................. 11 Keyboardshortcuts ................................ 11 Specialkeys ..................................... 11 1.2. Configuring TEXMACS ..................................... 12 1.3. Creating, saving and loading documents . ............ 12 1.4. Printingdocuments .............................. ........ 13 2. Writing simple documents ............................. 15 2.1. Generalities for typing text . ........... 15 2.2. Typingstructuredtext ........................... ......... 15 2.3. Content-basedtags -
The Reesalgebra Package in Macaulay2
Journal of Software for Algebra and Geometry The ReesAlgebra package in Macaulay2 DAVID EISENBUD vol 8 2018 JSAG 8 (2018), 49–60 The Journal of Software for dx.doi.org/10.2140/jsag.2018.8.49 Algebra and Geometry The ReesAlgebra package in Macaulay2 DAVID EISENBUD ABSTRACT: This note introduces Rees algebras and some of their uses, with illustrations from version 2.2 of the Macaulay2 package ReesAlgebra.m2. INTRODUCTION. A central construction in modern commutative algebra starts from an ideal I in a commutative ring R, and produces the Rees algebra R.I / VD R ⊕ I ⊕ I 2 ⊕ I 3 ⊕ · · · D∼ RTI tU ⊂ RTtU; where RTtU denotes the polynomial algebra in one variable t over R. For basics on Rees algebras, see[Vasconcelos 1994] and[Swanson and Huneke 2006], and for some other research, see[Eisenbud and Ulrich 2018; Kustin and Ulrich 1992; Ulrich 1994], and[Valabrega and Valla 1978]. From the point of view of algebraic geometry, the Rees algebra R.I / is a homo- geneous coordinate ring for the graph of a rational map whose total space is the blowup of Spec R along the scheme defined by I. (In fact, the “Rees algebra” is sometimes called the “blowup algebra”.) Rees algebras were first studied in the algebraic context by David Rees, in the now-famous paper[Rees 1958]. Actually, Rees mainly studied the ring RTI t; t−1U, now also called the extended Rees algebra of I. Mike Stillman and I wrote a Rees algebra script for Macaulay classic. It was aug- mented, and made into the[Macaulay2] package ReesAlgebra.m2 around 2002, to study a generalization of Rees algebras to modules described in[Eisenbud et al. -
SMT Solving in a Nutshell
SAT and SMT Solving in a Nutshell Erika Abrah´ am´ RWTH Aachen University, Germany LuFG Theory of Hybrid Systems February 27, 2020 Erika Abrah´ am´ - SAT and SMT solving 1 / 16 What is this talk about? Satisfiability problem The satisfiability problem is the problem of deciding whether a logical formula is satisfiable. We focus on the automated solution of the satisfiability problem for first-order logic over arithmetic theories, especially using SAT and SMT solving. Erika Abrah´ am´ - SAT and SMT solving 2 / 16 CAS SAT SMT (propositional logic) (SAT modulo theories) Enumeration Computer algebra DP (resolution) systems [Davis, Putnam’60] DPLL (propagation) [Davis,Putnam,Logemann,Loveland’62] Decision procedures NP-completeness [Cook’71] for combined theories CAD Conflict-directed [Shostak’79] [Nelson, Oppen’79] backjumping Partial CAD Virtual CDCL [GRASP’97] [zChaff’04] DPLL(T) substitution Watched literals Equalities and uninterpreted Clause learning/forgetting functions Variable ordering heuristics Bit-vectors Restarts Array theory Arithmetic Decision procedures for first-order logic over arithmetic theories in mathematical logic 1940 Computer architecture development 1960 1970 1980 2000 2010 Erika Abrah´ am´ - SAT and SMT solving 3 / 16 SAT SMT (propositional logic) (SAT modulo theories) Enumeration DP (resolution) [Davis, Putnam’60] DPLL (propagation) [Davis,Putnam,Logemann,Loveland’62] Decision procedures NP-completeness [Cook’71] for combined theories Conflict-directed [Shostak’79] [Nelson, Oppen’79] backjumping CDCL [GRASP’97] [zChaff’04] -
Numerical Algebraic Geometry
JSAG 3 (2011), 5 – 10 The Journal of Software for Algebra and Geometry Numerical Algebraic Geometry ANTON LEYKIN ABSTRACT. Numerical algebraic geometry uses numerical data to describe algebraic varieties. It is based on numerical polynomial homotopy continuation, which is an alternative to the classical symbolic approaches of computational algebraic geometry. We present a package, whose primary purpose is to interlink the existing symbolic methods of Macaulay2 and the powerful engine of numerical approximate computations. The core procedures of the package exhibit performance competitive with the other homotopy continuation software. INTRODUCTION. Numerical algebraic geometry [SVW,SW] is a relatively young subarea of compu- tational algebraic geometry that originated as a blend of the well-understood apparatus of classical algebraic geometry over the field of complex numbers and numerical polynomial homotopy continua- tion methods. Recently steps have been made to extend the reach of numerical algorithms making it possible not only for complex algebraic varieties, but also for schemes, to be represented numerically. What we present here is a description of “stage one” of a comprehensive project that will make the machinery of numerical algebraic geometry available to the wide community of users of Macaulay2 [M2], a dominantly symbolic computer algebra system. Our open-source package [L1, M2] was first released in Macaulay2 distribution version 1.3.1. Stage one has been limited to implementation of algorithms that solve the most basic problem: Given polynomials f1;:::; fn 2 C[x1;:::;xn] that generate a 0-dimensional ideal I = ( f1;:::; fn), find numerical approximations of all points of the underlying n variety V(I) = fx 2 C j f(x) = 0g. -
A Survey of User Interfaces for Computer Algebra Systems
J. Symbolic Computation (1998) 25, 127–159 A Survey of User Interfaces for Computer Algebra Systems NORBERT KAJLER† AND NEIL SOIFFER‡§ †Ecole des Mines de Paris, 60 Bd. St-Michel, 75006 Paris, France ‡Wolfram Research, Inc., 100 Trade Center Drive, Champaign, IL 61820, U.S.A. This paper surveys work within the Computer Algebra community (and elsewhere) di- rected towards improving user interfaces for scientific computation during the period 1963–1994. It is intended to be useful to two groups of people: those who wish to know what work has been done and those who would like to do work in the field. It contains an extensive bibliography to assist readers in exploring the field in more depth. Work related to improving human interaction with computer algebra systems is the main focus of the paper. However, the paper includes additional materials on some closely related issues such as structured document editing, graphics, and communication protocols. c 1998 Academic Press Limited 1. Introduction There are several problems with current computer algebra systems (CASs) that are interface-related. These problems include: the use of an unnatural linear notation to enter and edit expressions, the inherent difficulty of selecting and modifying subexpressions with commands, and the display of large expressions that run off the screen. These problems may intimidate novice users and frustrate experienced users. The more natural and intuitive the interface (the closer it corresponds to pencil and paper manipulations), the more likely it is that people will want to take advantage of the CAS for its ability to do tedious computations and to verify derivations.