Superresolved Multiphoton Microscopy with Spatial Frequency-Modulated Imaging

Total Page:16

File Type:pdf, Size:1020Kb

Superresolved Multiphoton Microscopy with Spatial Frequency-Modulated Imaging Superresolved multiphoton microscopy with spatial frequency-modulated imaging Jeffrey J. Fielda,b,c,d,1,2, Keith A. Wernsinga,1, Scott R. Dominguea, Alyssa M. Allende Motze,f, Keith F. DeLucab,c,d, Dean H. Levif, Jennifer G. DeLucab,c,d, Michael D. Younge, Jeff A. Squiere, and Randy A. Bartelsa,c,d,g aDepartment of Electrical and Computer Engineering, Colorado State University, Fort Collins, CO 80523; bDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO 80523; cMicroscope Imaging Network Foundational Core Facility, Colorado State University, Fort Collins, CO 80523; dInstitute for Genome Architecture and Function, Colorado State University, Fort Collins, CO 80523; eDepartment of Physics, Colorado School of Mines, Golden, CO 80401; fNational Renewable Energy Laboratory, Golden, CO 80401; and gSchool of Biomedical Engineering, Colorado State University, Fort Collins, CO 80523 Edited by Rebecca R. Richards-Kortum, Rice University, Houston, TX, and approved April 19, 2016 (received for review February 23, 2016) Superresolved far-field microscopy has emerged as a powerful electronic states (19), and saturation of scattering due to surface tool for investigating the structure of objects with resolution well plasmon resonance (20, 21). below the diffraction limit of light. Nearly all superresolution Conversely, harmonic generation (HG) results in no net energy imaging techniques reported to date rely on real energy states of transfer to the contrast generating molecules. In this case, the fluorescent molecules to circumvent the diffraction limit, prevent- photokinetics are often described via virtual energy states that ing superresolved imaging with contrast mechanisms that occur drive instantaneous coherent nonlinear scattering. The application via virtual energy states, including harmonic generation (HG). We of most superresolution imaging methods to virtual energy states report a superresolution technique based on spatial frequency- is not possible, including structured illumination microscopy modulated imaging (SPIFI) that permits superresolved nonlinear (SIM) (22). Despite this challenge, examples of HG microscopy microscopy with any contrast mechanism and with single-pixel with subdiffraction-limited resolution have been reported (23, 24). detection. We show multimodal superresolved images with two- In both cases, the polarization state of an illuminating laser pulse photon excited fluorescence (TPEF) and second-harmonic genera- was manipulated to reduce the size of the effective PSF. Although SCIENCES tion (SHG) from biological and inorganic media. Multiphoton SPIFI both methods succeeded in collecting HG images with sub- η APPLIED PHYSICAL (MP-SPIFI) provides spatial resolution up to 2 below the diffrac- diffraction limited resolution, these methods are unlikely to be tion limit, where η is the highest power of the nonlinear intensity robust to imaging at depth in tissue because of effects such as response. MP-SPIFI can be used to provide enhanced resolution in birefringence, circular dichroism, and optical scattering, which optically thin media and may provide a solution for superresolved imaging deep in scattering media. disrupt the input polarization state of the excitation laser pulse. Until now, a technique that provides superresolved imaging of both incoherent and coherent contrast mechanisms in complex superresolution | harmonic generation | multiphoton microscopy media has not yet emerged. Here, we report the use of multi- photon spatial frequency-modulated imaging (MP-SPIFI) (25– f the numerous far-field image formation techniques, mul- 28) for superresolved imaging of second-harmonic generation tiphoton microscopy (MPM) has proved particularly valu- O (SHG) and two-photon excited fluorescence (TPEF). We show able in many biological studies, providing multimodal images from deep within tissues (1), as well as label-free images of complex biological structures (2–4) and inorganic harmonic Significance probes (5, 6). Deep imaging is achieved twofold in laser-scanning microscopy with nonlinear excitation. First, inherent optical Superresolution microscopy is indispensable in biological sci- sectioning provided by the nonlinear intensity dependence (7) ences. The vast majority of superresolution imaging techniques permits removal of the confocal pinhole that is required in lin- exploit real energetic states of fluorescent molecules to break early excited microscopy, and highly scattered signal light can be the diffraction limit. To date, superresolved imaging of second- collected with a single-pixel detector. Second, excitation wave- and third-harmonic generation has been limited to specific lengths in the near infrared (NIR) (8, 9) enhance penetration sample preparations where the polarization state of the exci- depth of the ballistic photons responsible for nonlinear excita- tation laser can be manipulated to overcome the diffraction tion (10). Because of the diffraction limit of light, these longer limit. Here, we describe a method for multiphoton super- excitation wavelengths yield lower spatial resolution than resolved imaging that does not place such restrictions on the wavelengths in the visible region of the spectrum, such as those sample and allows for simultaneous superresolved imaging of required for confocal fluorescence microscopy. An imaging both coherent and incoherent signal light. Combined with method that could meet or surpass the spatial resolution single-element detection, this technique may allow for signif- achievable with confocal fluorescence microscopy while main- icant advances in multimodal multiphoton imaging of highly taining the penetration depth of multiphoton microscopy could scattering biological tissues. dramatically impact biological imaging. The most successful superresolved microscopy techniques Author contributions: J.J.F. and R.A.B. designed research; J.J.F., K.A.W., and A.M.A.M. performed research; S.R.D., K.F.D., D.H.L., J.G.D., M.D.Y., and J.A.S. contributed new reported to date have exploited the real energy states of probe reagents/analytic tools; K.A.W. constructed the laser source; S.R.D. designed and con- molecules to generate image contrast. These real energy states structed the laser source; A.M.A.M. and D.H.L. provided CdTe solar cells for imaging; provide a means to manipulate fluorescent light emitted from K.F.D. and J.G.D. provided HeLa cells for imaging; J.J.F., K.A.W., and R.A.B. analyzed probe molecules, offering a pathway to reducing the effective data; and J.J.F., K.A.W., and R.A.B. wrote the paper. size of the point-spread function (PSF), which sets the spatial The authors declare no conflict of interest. resolution of the microscope. Some examples include saturated This article is a PNAS Direct Submission. structured-illumination microscopy (SSIM) (11), photoactivated 1J.J.F. and K.A.W. contributed equally to this work. localization microscopy (PALM) (12, 13), stimulated emission 2To whom correspondence should be addressed. Email: [email protected]. – depletion (STED) microscopy (14 16), ground state depletion This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10. (GSD) microscopy (17, 18), saturation of transient absorption in 1073/pnas.1602811113/-/DCSupplemental. www.pnas.org/cgi/doi/10.1073/pnas.1602811113 PNAS | June 14, 2016 | vol. 113 | no. 24 | 6605–6610 Downloaded by guest on September 27, 2021 that MP-SPIFI can be used to collect images of both SHG and represents the probability of contrast light generation for a second- TPEF simultaneously and with spatial resolution beyond that of a order nonlinear process, is shown in Fig. 1B.Toforma1D conventional laser-scanning multiphoton microscope. By combin- image of the object, the spatial frequency of the fringes in the ing the relative scattering immunity offered by illumination wave- illumination intensity, which is inversely proportional to the lengths in the NIR with single-pixel detection of signal light, MP- separation of adjacent fringes (Fig. 1C), is varied in time SPIFI has the potential to collect images from unlabeled biological through the range of spatial frequencies supported by the specimens that exhibit harmonic generation. objective lens, i.e., fxðtÞ ∈ ½−NA=λ, + NA=λ (Movie S1). Signal The physical principles of image formation in SPIFI micros- light generated by the interaction of the illuminating light sheet and copy have been rigorously studied in previous reports (25, 27). the specimen is then collected with a single-pixel detector. However, no reports to date have described imaging beyond the The measured signal from the detector, SðtÞ, is represented by diffraction limit with SPIFI. Here, we describe the image for- integratingR the signal light intensity, βðx, tÞ,overallspace: ð Þ = ∞ βð Þ = hβð Þi mation process in SPIFI for both linear and nonlinear excitation S t −∞ dx x, t x, t x. In linearly excited SPIFI, the of signal light generation. signal light is proportional to the product of the illumination The microscope configuration used for this work forms 1D intensity, Iðx, tÞ, and the spatial distribution of contrast-gen- images, similar to the systems used in refs. 25 and 27. Conse- erating molecules, CðxÞ.NotethatwehaveassumedCðxÞ is quently, we constrain the theoretical analysis that follows to a 1D stationary and does not photobleach during the measurement imaging system that collects image data in the x dimension. of a single 1D image. Absorbing proportionality constants However, there
Recommended publications
  • Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections
    Portland State University PDXScholar Dissertations and Theses Dissertations and Theses Fall 12-1-2017 Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections Fredrick Michael DeArmond Portland State University Let us know how access to this document benefits ouy . Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Part of the Physics Commons Recommended Citation DeArmond, Fredrick Michael, "Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections" (2017). Dissertations and Theses. Paper 4036. 10.15760/etd.5920 This Dissertation is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. For more information, please contact [email protected]. Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections by Fredrick Michael DeArmond A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Applied Physics Dissertation Committee: Erik J. Sánchez, Chair Erik Bodegom Ralf Widenhorn Robert Strongin Portland State University 2017 ABSTRACT As optical microscopy techniques continue to improve, most notably the development of super-resolution optical microscopy which garnered the Nobel Prize in Chemistry in 2014, renewed emphasis has been placed on the development and use of fluorescence microscopy techniques. Of particular note is a renewed interest in multiphoton excitation due to a number of inherent properties of the technique including simplified optical filtering, increased sample penetration, and inherently confocal operation. With this renewed interest in multiphoton fluorescence microscopy, comes increased interest in and demand for robust non-linear fluorescent markers, and characterization of the associated tool set.
    [Show full text]
  • Replace This with the Actual Title Using All Caps
    THREE-PHOTON MICROSCOPY AT 1700 NM FOR IN VIVO IMAGING A Dissertation Presented to the Faculty of the Graduate School of Cornell University In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy by Nicholas Geoffrey Horton May 2015 © 2015 Nicholas Geoffrey Horton THREE-PHOTON MICROSCOPY AT 1,700 NM FOR IN VIVO IMAGING Nicholas Geoffrey Horton, Ph. D. Cornell University 2015 Multiphoton fluorescence microscopy (MPM) allows scientists to noninvasively observe structures deep within tissue. Two-photon microscopy (2PM) in the 750-1000 nm excitation region has been the standard MPM technique since its first demonstration in 1990. However, the maximum imaging depth for 2PM is limited by the signal-to-background ratio (SBR). In this dissertation, three-photon imaging at 1700 nm excitation wavelength (1700 nm 3PM) is presented. The combination of the long excitation wavelength and the higher order nonlinear excitation overcomes the SBR limitations of 2PM, enabling biological investigations to take place at greater depth within tissue. In chapter 1, tissue imaging is discussed, paying special attention to the development of laser scanning fluorescence microscopy. In chapter 2, non-invasive, high resolution, in vivo imaging of subcortical structures within an intact mouse brain using 1700 nm 3PM is presented. Vascular structures as well as red fluorescent protein (RFP)-labeled neurons within the mouse hippocampus are imaged. In chapter 3, dispersion compensation of 1700 nm 3PM is discussed. Signal generation in 3PM is proportional to the inverse-squared of the pulse width. We show that the high normal dispersion of a silicon wafer can be conveniently used to compensate the anomalous dispersion of a 1,700 nm excitation three-photon microscope.
    [Show full text]
  • Wide. Fast. Deep. Recent Advances in Multi-Photon Microscopy of in Vivo Neuronal Activity
    TechSights Wide. Fast. Deep. Recent Advances in Multi- Photon Microscopy of in vivo Neuronal Activity https://doi.org/10.1523/JNEUROSCI.1527-18.2019 Cite as: J. Neurosci 2019; 10.1523/JNEUROSCI.1527-18.2019 Received: 2 March 2019 Revised: 27 September 2019 Accepted: 27 September 2019 This Early Release article has been peer-reviewed and accepted, but has not been through the composition and copyediting processes. The final version may differ slightly in style or formatting and will contain links to any extended data. Alerts: Sign up at www.jneurosci.org/alerts to receive customized email alerts when the fully formatted version of this article is published. Copyright © 2019 the authors 1 Wide. Fast. Deep. Recent Advances in Multi-Photon Microscopy of in vivo Neuronal Activity. 2 Abbreviated title: Recent Advances of in vivo Multi-Photon Microscopy 3 Jérôme Lecoq1, Natalia Orlova1, Benjamin F. Grewe2,3,4 4 1 Allen Institute for Brain Science, Seattle, USA 5 2 Institute of Neuroinformatics, UZH and ETH Zurich, Switzerland 6 3 Dept. of Electrical Engineering and Information Technology, ETH Zurich, Switzerland 7 4 Faculty of Sciences, University of Zurich, Switzerland 8 9 Corresponding author: Jérôme Lecoq, [email protected] 10 Number of pages: 24 11 Number of figures: 6 12 Number of tables: 1 13 Number of words for: 14 ● abstract: 196 15 ● introduction: 474 16 ● main text: 5066 17 Conflict of interest statement: The authors declare no competing financial interests. 18 Acknowledgments: We thank Kevin Takasaki and Peter Saggau (Allen Institute for Brain Science) for providing helpful 19 comments on the manuscript; we thank Bénédicte Rossi for providing scientific illustrations.
    [Show full text]
  • Electron Microscopy and the Investigation of New Infectious Diseases
    Review Electron microscopy and the investigation of new infectious diseases Alan Curry@) Objectives: To review and assess the role of electron microscopy in the investigation of new infectious diseases. Design: To design a screening strategy to maximize the likelihood of detecting new or emerging pathogens in clinical samples. Results: Electron microscopy remains a useful method of investigating some viral infections (infantile gastroenteritis, virus-induced outbreaks of gastroenteritis and skin lesions) using the negative staining technique. In addition, it remains an essential technique for the investigation of new and emerging parasitic protozoan infections in the immunocompromised patients from resin-embedded tissue biopsies. Electron microscopy can also have a useful role in the investigation of certain bacterial infections. Conclusions: Electron microscopy still has much to contribute to the investigation of new and emerging pathogens, and should be perceived as capable of producing different, but equally relevant, information compared to other investigative techniques. It is the application of a combined investigative approach using several different techniques that will further our understanding of new infectious diseases. Int J Infect Dis 2003; 7: 251-258 INTRODUCTION at individually by a skilled microscopist have con- The electron microscope was developed just before tributed to the decline of electron microscopy. Against World War II in several countries, but particularly in this background, the inevitable question must be Germany.l The dramatic increase in resolution available asked-does electron microscopy still have a useful in comparison with light microscopy promised to role to play in the investigation of emerging or new revolutionize many aspects of cell biology, virology, infectious diseases? bacteriology, mycology and protozoan parasitology.
    [Show full text]
  • Second Harmonic Imaging Microscopy
    170 Microsc Microanal 9(Suppl 2), 2003 DOI: 10.1017/S143192760344066X Copyright 2003 Microscopy Society of America Second Harmonic Imaging Microscopy Leslie M. Loew,* Andrew C. Millard,* Paul J. Campagnola,* William A. Mohler,* and Aaron Lewis‡ * Center for Biomedical Imaging Technology, University of Connecticut Health Center, Farmington, CT 06030-1507 USA ‡ Division of Applied Physics, Hebrew University of Jerusalem, Jerusalem 91904, Israel Second Harmonic Generation (SHG) has been developed in our laboratories as a high- resolution non-linear optical imaging microscopy (“SHIM”) for cellular membranes and intact tissues. SHG is a non-linear process that produces a frequency doubling of the intense laser field impinging on a material with a high second order susceptibility. It shares many of the advantageous features for microscopy of another more established non-linear optical technique: two-photon excited fluorescence (TPEF). Both are capable of optical sectioning to produce 3D images of thick specimens and both result in less photodamage to living tissue than confocal microscopy. SHG is complementary to TPEF in that it uses a different contrast mechanism and is most easily detected in the transmitted light optical path. It also does not arise via photon emission from molecular excited states, as do both 1- and 2-photon excited fluorescence. SHG of intrinsic highly ordered biological structures such as collagen has been known for some time but only recently has the full potential of high resolution 3D SHIM been demonstrated on live cells and tissues. For example, Figure 1 shows SHIM from microtubules in a living organism, C. elegans. The images were obtained from a transgenic nematode that expresses a ß-tubulin-green fluorescent protein fusion and Figure 1 also shows the TPEF image from this molecule for comparison.
    [Show full text]
  • Applications of Microscopy in Bacteriology
    Microscopy Research, 2016, 4, 1-9 Published Online January 2016 in SciRes. http://www.scirp.org/journal/mr http://dx.doi.org/10.4236/mr.2016.41001 Applications of Microscopy in Bacteriology Mini Mishra1, Pratima Chauhan2* 1Centre of Environmental Studies, Department of Botany, University of Allahabad, Allahabad, India 2Department of Physics, University of Allahabad, Allahabad, India Received 28 September 2015; accepted 2 January 2016; published 5 January 2016 Copyright © 2016 by authors and Scientific Research Publishing Inc. This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/ Abstract Bacteria are smallest primitive, simple, unicellular, prokaryotic and microscopic organisms. But these organisms cannot be studied with naked eyes because of their minute structure. Therefore in search for the information about the structure and composition of bacterial cells, cell biologist used light microscopes with a numerical aperture of 1.4 and using wavelength of 0.4 µm separa- tion. But there are still certain cellular structures that cannot be seen through naked eyes, and for them electron microscope is used. There are certain improved types of light microscope which can be incorporated to improve their resolving power. Hence microscopy is playing a crucial role in the field of bacteriology. Keywords AFM, SEM, TEM, Microscopy, Bacteriology 1. Introduction To get acquainted with the world of bacteria like small organisms, very effective and advanced technique is re- quired. The size of bacteria ranges between 0.5 - 5.0 micrometer in length; the smallest of them are members of mycoplasma which measures 0.3 micrometers [1].
    [Show full text]
  • The Development of High Performance Liquid
    Florida International University FIU Digital Commons FIU Electronic Theses and Dissertations University Graduate School 3-23-2010 The evelopmeD nt of High Performance Liquid Chromatography Systems for the Analysis of Improvised Explosives Megan N. Bottegal Florida International University, [email protected] DOI: 10.25148/etd.FI10041603 Follow this and additional works at: https://digitalcommons.fiu.edu/etd Recommended Citation Bottegal, Megan N., "The eD velopment of High Performance Liquid Chromatography Systems for the Analysis of Improvised Explosives" (2010). FIU Electronic Theses and Dissertations. 154. https://digitalcommons.fiu.edu/etd/154 This work is brought to you for free and open access by the University Graduate School at FIU Digital Commons. It has been accepted for inclusion in FIU Electronic Theses and Dissertations by an authorized administrator of FIU Digital Commons. For more information, please contact [email protected]. FLORIDA INTERNATIONAL UNIVERSITY Miami, Florida THE DEVELOPMENT OF OPTIMIZED HIGH PERFORMANCE LIQUID CHROMATOGRAPHY SYSTEMS FOR THE ANALYSIS OF IMPROVISED EXPLOSIVES A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in CHEMISTRY by Megan Nicole Bottegal 2010 To: Dean Kenneth Furton College of Arts and Sciences This dissertation, written by Megan Nicole Bottegal, and entitled The Development of Optimized High Performance Liquid Chromatography Systems for the Anlysis of Improvised Explosives, having been approved in respect to style and intellectual content, is referred to you for judgment. We have read this dissertation and recommend that it be approved. ____________________________________ Jose Almirall ____________________________________ John Berry ____________________________________ William Hearn ____________________________________ Fenfei Leng ____________________________________ DeEtta Mills ____________________________________ Bruce McCord, Major Professor Date of Defense: March 23, 2010 The dissertation of Megan Nicole Bottegal is approved.
    [Show full text]
  • Examples of High Performance Liquid Chromatography (HPLC) Application in Marine Ecology Studies in the Northern Adriatic
    Prejeto / Received: 19.6.2009 Sprejeto / Accepted: 17.12.2009 Examples of high performance liquid chromatography (HPLC) application in marine ecology studies in the northern Adriatic Vesna FLANDER-PUTRLE Marine Biology Station, National Institute of Biology, Fornače 41, SI-6330 Piran; e-mail: [email protected] Abstract. Photosynthetic pigments have proved to be useful biomarkers of the abundance, composition and physiological status of the phytoplankton biomass in the marine environment. Using HPLC pigment analysis, we determined phytoplankton community structure in three different marine environments: in the area of a fish farm, in the area of sewage outlets, and in the mucilaginous aggregates. At the reference site we observed seasonal changes with prevalence of fucoxanthin-containing phytoplankton (i.e. diatoms) during winter/spring and autumn. In the fish farm area the concentration of chlorophyll a degradation products was higher, whereas in the locally enriched environment of sewage outlets we observed only small changes in taxonomic composition and phytoplankton biomass. The impact of season is more expressed than the impact of sewage discharge. With the use of HPLC pigment analysis we determined the development of phytoplankton community in different stages of mucilage aggregates. Phytoplankton biomass was composed primarily of diatoms, and as the aggregates aged, diatoms increased in the relative biomass. Our examples have proven the usefulness and suitability of HPLC pigment analysis in marine ecology studies. Key words: pigments, HPLC, phytoplankton, Adriatic Sea, mucilage, fish farm, sewage outlets Izvleček: PRIMERI UPORABE TEKOČINSKE KROMATOGRAFIJE VISOKE LOČLJIVOSTI (HPLC) PRI ŠTUDIJAH MORSKE EKOLOGIJE SEVERNEGA JADRANA – Fotosintezna barvila so se izkazala kot dobri kazalci abundance, sestave in fiziološkega stanja fitoplanktonske biomase v morskem okolju.
    [Show full text]
  • Microscopy, Optical Spectroscopy, and Macroscopic Techniques Series: Methods in Molecular Biology, Vol
    C. Jones, B. Mulloy, A.H. Thomas Microscopy, Optical Spectroscopy, and Macroscopic Techniques Series: Methods in Molecular Biology, Vol. 22 This is the second of three volumes of Methods in Molecular Biology that deal with Physical Methods of Analysis. The first of these, Spectroscopic Methods and Analyses dealt with NMR spec troscopy, mass spectrometry, and metalloprotein techniques, and the third will cover X-ray crystallographic methods. As with the first volume. Microscopy, Optical Spectroscopy, and Macroscopic Techniques is intended to provide a basic understand ing for the biochemist or biologist who needs to collaborate with spe cialists in applying the techniques of modern physical chemistry to biological macromolecules. The methods treated in this book fall into four groups. Part One covers microscopy, which aims to visualize individual molecules or complexes of several molecules. Electron microscopy is the more familiar of these, while scanning tunneling microscopy is a new and rapidly developing tool. Methods for determining the shapes and sizes of molecules in solution are described in Part Two, which includes chapters on X-ray and neutron scattering, 1994, XI, 251 p. light scattering, and ult- centrifugation. Calorimetry, described in Part Three, provides the means to monitor processes involving thermodynamic changes, whether these are A product of Humana Press intramolecular, such as conformational transition, or the interactions between solutes or between a solute and its sol vent. Part Four is concerned with optical and infrared Printed book spectroscopy and describes applications ranging from the measurement of protein concentration by UV absorbance to the analysis of secondary struc ture using circular Hardcover dichroism and Fourier-transform infrared spec troscopy.
    [Show full text]
  • Proximity Scanning Transmission Electron Microscopy/Spectroscopy
    Proximity Scanning Transmission Electron Microscopy/Spectroscopy Ing-Shouh Hwang . Institute of Physics, Academia Sinica, Nankang, Taipei, Taiwan Email: [email protected] Abstract Here a new microscopic method is proposed to image and characterize very thin samples like few-layer materials, organic molecules, and nanostructures with nanometer or sub-nanometer resolution using electron beams of energies lower than 20 eV. The microscopic technique achieves high resolution through the proximity (or near-field) effect, as in scanning tunneling microscopy (STM), while it also allows detection of transmitted electrons for imaging and spectroscopy, as in scanning transmission electron microscopy (STEM). This proximity transmission electron microscopy (PSTEM) does not require any lens to focus the electron beam. It also allows detailed characterization of the interaction of low-energy electron with materials. PSTEM can operate in a way very similar to scanning tunneling microscopy, which provides high-resolution imaging of geometric and electronic structures of the sample surface. In addition, it allows imaging and characterization of the interior structures of the sample based on the detected transmission electron signals. PSTEM comprises a family of spectroscopies that address the transport and scattering of low-energy electrons in materials. Thus rich information can be extracted from the measurements. PSTEM offers a fundamentally new and powerful way to investigate thin materials. New analysis methods of thin materials and new physics may be uncovered by this method. Scanning tunneling microscopy (STM) [1] has been a powerful technique to study topographic and electronic properties of sample surfaces with atomic resolution. Fig. 1a illustrates a schematic of STM. A metal tip is brought to a conductive sample surface to within ~ 1 nm.
    [Show full text]
  • Introduction to Confocal Laser Scanning Microscopy (LEICA)
    Introduction to Confocal Laser Scanning Microscopy (LEICA) This presentation has been put together as a common effort of Urs Ziegler, Anne Greet Bittermann, Mathias Hoechli. Many pages are copied from Internet web pages or from presentations given by Leica, Zeiss and other companies. Please browse the internet to learn interactively all about optics. For questions & registration please contact www.zmb.unizh.ch . Confocal Laser Scanning Microscopy xy yz 100 µm xz 100 µm xy yz xz thick specimens at different depth 3D reconstruction Types of confocal microscopes { { { point confocal slit confocal spinning disc confocal (Nipkov) Best resolution and out-of-focus suppression as well as highest multispectral flexibility is achieved only by the classical single point confocal system ! Fundamental Set-up of Fluorescence Microscopes: confocal vs. widefield Confocal Widefield Fluorescence Fluorescence Microscopy Microscopy Photomultiplier LASER detector Detector pinhole aperture CCD Dichroic mirror Fluorescence Light Source Light source Okular pinhole aperture Fluorescence Filter Cube Objectives Sample Plane Z Focus Confocal laser scanning microscope - set up: The system is composed of a a regular florescence microscope and the confocal part, including scan head, laser optics, computer. Comparison: Widefield - Confocal Y X Higher z-resolution and reduced out-of-focus-blur make confocal pictures crisper and clearer. Only a small volume can be visualized by confocal microscopes at once. Bigger volumes need time consuming sampling and image reassembling.
    [Show full text]
  • Label-Free Multiphoton Microscopy: Much More Than Fancy Images
    International Journal of Molecular Sciences Review Label-Free Multiphoton Microscopy: Much More than Fancy Images Giulia Borile 1,2,*,†, Deborah Sandrin 2,3,†, Andrea Filippi 2, Kurt I. Anderson 4 and Filippo Romanato 1,2,3 1 Laboratory of Optics and Bioimaging, Institute of Pediatric Research Città della Speranza, 35127 Padua, Italy; fi[email protected] 2 Department of Physics and Astronomy “G. Galilei”, University of Padua, 35131 Padua, Italy; [email protected] (D.S.); andrea.fi[email protected] (A.F.) 3 L.I.F.E.L.A.B. Program, Consorzio per la Ricerca Sanitaria (CORIS), Veneto Region, 35128 Padua, Italy 4 Crick Advanced Light Microscopy Facility (CALM), The Francis Crick Institute, London NW1 1AT, UK; [email protected] * Correspondence: [email protected] † These authors contributed equally. Abstract: Multiphoton microscopy has recently passed the milestone of its first 30 years of activity in biomedical research. The growing interest around this approach has led to a variety of applications from basic research to clinical practice. Moreover, this technique offers the advantage of label-free multiphoton imaging to analyze samples without staining processes and the need for a dedicated system. Here, we review the state of the art of label-free techniques; then, we focus on two-photon autofluorescence as well as second and third harmonic generation, describing physical and technical characteristics. We summarize some successful applications to a plethora of biomedical research fields and samples, underlying the versatility of this technique. A paragraph is dedicated to an overview of sample preparation, which is a crucial step in every microscopy experiment.
    [Show full text]