Basic Linux Commands
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At—At, Batch—Execute Commands at a Later Time
at—at, batch—execute commands at a later time at [–csm] [–f script] [–qqueue] time [date] [+ increment] at –l [ job...] at –r job... batch at and batch read commands from standard input to be executed at a later time. at allows you to specify when the commands should be executed, while jobs queued with batch will execute when system load level permits. Executes commands read from stdin or a file at some later time. Unless redirected, the output is mailed to the user. Example A.1 1 at 6:30am Dec 12 < program 2 at noon tomorrow < program 3 at 1945 pm August 9 < program 4 at now + 3 hours < program 5 at 8:30am Jan 4 < program 6 at -r 83883555320.a EXPLANATION 1. At 6:30 in the morning on December 12th, start the job. 2. At noon tomorrow start the job. 3. At 7:45 in the evening on August 9th, start the job. 4. In three hours start the job. 5. At 8:30 in the morning of January 4th, start the job. 6. Removes previously scheduled job 83883555320.a. awk—pattern scanning and processing language awk [ –fprogram–file ] [ –Fc ] [ prog ] [ parameters ] [ filename...] awk scans each input filename for lines that match any of a set of patterns specified in prog. Example A.2 1 awk '{print $1, $2}' file 2 awk '/John/{print $3, $4}' file 3 awk -F: '{print $3}' /etc/passwd 4 date | awk '{print $6}' EXPLANATION 1. Prints the first two fields of file where fields are separated by whitespace. 2. Prints fields 3 and 4 if the pattern John is found. -
A Postgresql Development Environment
A PostgreSQL development environment Peter Eisentraut [email protected] @petereisentraut The plan tooling building testing developing documenting maintaining Tooling: Git commands Useful commands: git add (-N, -p) git ls-files git am git format-patch git apply git grep (-i, -w, -W) git bisect git log (-S, --grep) git blame -w git merge git branch (--contains, -d, -D, --list, git pull -m, -r) git push (-n, -f, -u) git checkout (file, branch, -b) git rebase git cherry-pick git reset (--hard) git clean (-f, -d, -x, -n) git show git commit (--amend, --reset, -- git status fixup, -a) git stash git diff git tag Tooling: Git configuration [diff] colorMoved = true colorMovedWS = allow-indentation-change [log] date = local [merge] conflictStyle = diff3 [rebase] autosquash = true [stash] showPatch = true [tag] sort = version:refname [versionsort] suffix = "_BETA" suffix = "_RC" Tooling: Git aliases [alias] check-whitespace = \ !git diff-tree --check $(git hash-object -t tree /dev/null) HEAD ${1:-$GIT_PREFIX} find = !git ls-files "*/$1" gtags = !git ls-files | gtags -f - st = status tags = tag -l wdiff = diff --color-words=[[:alnum:]]+ wshow = show --color-words Tooling: Git shell integration zsh vcs_info Tooling: Editor Custom settings for PostgreSQL sources exist. Advanced options: whitespace checking automatic spell checking (flyspell) automatic building (flycheck, flymake) symbol lookup ("tags") Tooling: Shell settings https://superuser.com/questions/521657/zsh-automatically-set-environment-variables-for-a-directory zstyle ':chpwd:profiles:/*/*/devel/postgresql(|/|/*)' profile postgresql chpwd_profile_postgresql() { chpwd_profile_default export EMAIL="[email protected]" alias nano='nano -T4' LESS="$LESS -x4" } Tooling — Summary Your four friends: vcs editor shell terminal Building: How to run configure ./configure -C/--config-cache --prefix=$(cd . -
Lossless Audio Codec Comparison
Contents Introduction 3 1 CD-audio test 4 1.1 CD's used . .4 1.2 Results all CD's together . .4 1.3 Interesting quirks . .7 1.3.1 Mono encoded as stereo (Dan Browns Angels and Demons) . .7 1.3.2 Compressibility . .9 1.4 Convergence of the results . 10 2 High-resolution audio 13 2.1 Nine Inch Nails' The Slip . 13 2.2 Howard Shore's soundtrack for The Lord of the Rings: The Return of the King . 16 2.3 Wasted bits . 18 3 Multichannel audio 20 3.1 Howard Shore's soundtrack for The Lord of the Rings: The Return of the King . 20 A Motivation for choosing these CDs 23 B Test setup 27 B.1 Scripting and graphing . 27 B.2 Codecs and parameters used . 27 B.3 MD5 checksumming . 28 C Revision history 30 Bibliography 31 2 Introduction While testing the efficiency of lossy codecs can be quite cumbersome (as results differ for each person), comparing lossless codecs is much easier. As the last well documented and comprehensive test available on the internet has been a few years ago, I thought it would be a good idea to update. Beside comparing with CD-audio (which is often done to assess codec performance) and spitting out a grand total, this comparison also looks at extremes that occurred during the test and takes a look at 'high-resolution audio' and multichannel/surround audio. While the comparison was made to update the comparison-page on the FLAC website, it aims to be fair and unbiased. -
UNIX Cheat Sheet – Sarah Medland Help on Any Unix Command List a Directory Change to Directory Make a New Directory Remove A
THE 2013 INTERNATIONAL WORKSHOP ON STATISTICAL METHODOLOGY FOR HUMAN GENOMIC STUDIES UNIX cheat sheet – Sarah Medland Help on any Unix command man {command} Type man ls to read the manual for the ls command. which {command} Find out where a program is installed whatis {command} Give short description of command. List a directory ls {path} ls -l {path} Long listing, with date, size and permisions. ls -R {path} Recursive listing, with all subdirs. Change to directory cd {dirname} There must be a space between. cd ~ Go back to home directory, useful if you're lost. cd .. Go back one directory. Make a new directory mkdir {dirname} Remove a directory/file rmdir {dirname} Only works if {dirname} is empty. rm {filespec} ? and * wildcards work like DOS should. "?" is any character; "*" is any string of characters. Print working directory pwd Show where you are as full path. Copy a file or directory cp {file1} {file2} cp -r {dir1} {dir2} Recursive, copy directory and all subdirs. cat {newfile} >> {oldfile} Append newfile to end of oldfile. Move (or rename) a file mv {oldfile} {newfile} Moving a file and renaming it are the same thing. View a text file more {filename} View file one screen at a time. less {filename} Like more , with extra features. cat {filename} View file, but it scrolls. page {filename} Very handy with ncftp . nano {filename} Use text editor. head {filename} show first 10 lines tail {filename} show last 10 lines Compare two files diff {file1} {file2} Show the differences. sdiff {file1} {file2} Show files side by side. Other text commands grep '{pattern}' {file} Find regular expression in file. -
Introduction to Linux – Part 1
Introduction to Linux – Part 1 Brett Milash and Wim Cardoen Center for High Performance Computing May 22, 2018 ssh Login or Interactive Node kingspeak.chpc.utah.edu Batch queue system … kp001 kp002 …. kpxxx FastX ● https://www.chpc.utah.edu/documentation/software/fastx2.php ● Remote graphical sessions in much more efficient and effective way than simple X forwarding ● Persistence - can be disconnected from without closing the session, allowing users to resume their sessions from other devices. ● Licensed by CHPC ● Desktop clients exist for windows, mac, and linux ● Web based client option ● Server installed on all CHPC interactive nodes and the frisco nodes. Windows – alternatives to FastX ● Need ssh client - PuTTY ● http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html - XShell ● http://www.netsarang.com/download/down_xsh.html ● For X applications also need X-forwarding tool - Xming (use Mesa version as needed for some apps) ● http://www.straightrunning.com/XmingNotes/ - Make sure X forwarding enabled in your ssh client Linux or Mac Desktop ● Just need to open up a terminal or console ● When running applications with graphical interfaces, use ssh –Y or ssh –X Getting Started - Login ● Download and install FastX if you like (required on windows unless you already have PuTTY or Xshell installed) ● If you have a CHPC account: - ssh [email protected] ● If not get a username and password: - ssh [email protected] Shell Basics q A Shell is a program that is the interface between you and the operating system -
Lecture 7 Network Management and Debugging
SYSTEM ADMINISTRATION MTAT.08.021 LECTURE 7 NETWORK MANAGEMENT AND DEBUGGING Prepared By: Amnir Hadachi and Artjom Lind University of Tartu, Institute of Computer Science [email protected] / [email protected] 1 LECTURE 7: NETWORK MGT AND DEBUGGING OUTLINE 1.Intro 2.Network Troubleshooting 3.Ping 4.SmokePing 5.Trace route 6.Network statistics 7.Inspection of live interface activity 8.Packet sniffers 9.Network management protocols 10.Network mapper 2 1. INTRO 3 LECTURE 7: NETWORK MGT AND DEBUGGING INTRO QUOTE: Networks has tendency to increase the number of interdependencies among machine; therefore, they tend to magnify problems. • Network management tasks: ✴ Fault detection for networks, gateways, and critical servers ✴ Schemes for notifying an administrator of problems ✴ General network monitoring, to balance load and plan expansion ✴ Documentation and visualization of the network ✴ Administration of network devices from a central site 4 LECTURE 7: NETWORK MGT AND DEBUGGING INTRO Network Size 160 120 80 40 Management Procedures 0 AUTOMATION ILLUSTRATION OF NETWORK GROWTH VS MGT PROCEDURES AUTOMATION 5 LECTURE 7: NETWORK MGT AND DEBUGGING INTRO • Network: • Subnets + Routers / switches Time to consider • Automating mgt tasks: • shell scripting source: http://www.eventhelix.com/RealtimeMantra/Networking/ip_routing.htm#.VvjkA2MQhIY • network mgt station 6 2. NETWORK TROUBLES HOOTING 7 LECTURE 7: NETWORK MGT AND DEBUGGING NETWORK TROUBLESHOOTING • Many tools are available for debugging • Debugging: • Low-level (e.g. TCP/IP layer) • high-level (e.g. DNS, NFS, and HTTP) • This section progress: ping trace route GENERAL ESSENTIAL TROUBLESHOOTING netstat TOOLS STRATEGY nmap tcpdump … 8 LECTURE 7: NETWORK MGT AND DEBUGGING NETWORK TROUBLESHOOTING • Before action, principle to consider: ✴ Make one change at a time ✴ Document the situation as it was before you got involved. -
Medi-Cal Dental EDI How-To Guide
' I edi Cal Dental _ Electronic Data Interchange HOW-TO GUIDE EDI EDI edi EDI Support Group Phone: (916) 853-7373 Email: [email protected] Revised November 2019 , ] 1 ,edi .. Cal Dental Medi-Cal Dental Program EDI How-To Guide 11/2019 Welcome to Medical Dental Program’s Electronic Data Interchange Program! This How-To Guide is designed to answer questions providers may have about submitting claims electronically. The Medi-Cal Dental Program's Electronic Data Interchange (EDI) program is an efficient alternative to sending paper claims. It will provide more efficient tracking of the Medi-Cal Dental Program claims with faster responses to requests for authorization and payment. Before submitting claims electronically, providers must be enrolled as an EDI provider to avoid rejection of claims. To enroll, providers must complete the Medi-Cal Dental Telecommunications Provider and Biller Application/Agreement (For electronic claim submission), the Provider Service Office Electronic Data Interchange Option Selection Form and Electronic Remittance Advice (ERA) Enrollment Form and return them to the address indicated on those forms. Providers should advise their software vendor that they would like to submit Medi-Cal Dental Program claims electronically, and if they are not yet enrolled in the EDI program, an Enrollment Packet should be requested from the EDI Support department. Enrollment forms are also available on the Medi-Cal Dental Program Web site (www.denti- cal.ca.gov) under EDI, located on the Providers tab. Providers may also submit digitized images of documentation to the Medi-Cal Dental Program. If providers choose to submit conventional radiographs and attachments through the mail, an order for EDI labels and envelopes will need to be placed using the Forms Reorder Request included in the Enrollment Packet and at the end of this How-To Guide. -
Unix Command Line; Editors
Unix command line; editors Karl Broman Biostatistics & Medical Informatics, UW–Madison kbroman.org github.com/kbroman @kwbroman Course web: kbroman.org/AdvData My goal in this lecture is to convince you that (a) command-line-based tools are the things to focus on, (b) you need to choose a powerful, universal text editor (you’ll use it a lot), (c) you want to be comfortable and skilled with each. For your work to be reproducible, it needs to be code-based; don’t touch that mouse! Windows vs. Mac OSX vs. Linux Remote vs. Not 2 The Windows operating system is not very programmer-friendly. Mac OSX isn’t either, but under the hood, it’s just unix. Don’t touch the mouse! Open a terminal window and start typing. I do most of my work directly on my desktop or laptop. You might prefer to work remotely on a server, instead. But I can’t stand having any lag in looking at graphics. If you use Windows... Consider Git Bash (or Cygwin) or turn on the Windows subsystem for linux 3 Cygwin is an effort to get Unix command-line tools in Windows. Git Bash combines git (for version control) and bash (the unix shell); it’s simpler to deal with than Cygwin. Linux is now accessible in Windows 10, but you have to enable it. If you use a Mac... Consider Homebrew and iTerm2 Also the XCode command line tools 4 Homebrew is a packaging system; iTerm2 is a Terminal replacement. The XCode command line tools are a must for most unixy things on a Mac. -
Cluster-Based Delta Compression of a Collection of Files Department of Computer and Information Science
Cluster-Based Delta Compression of a Collection of Files Zan Ouyang Nasir Memon Torsten Suel Dimitre Trendafilov Department of Computer and Information Science Technical Report TR-CIS-2002-05 12/27/2002 Cluster-Based Delta Compression of a Collection of Files Zan Ouyang Nasir Memon Torsten Suel Dimitre Trendafilov CIS Department Polytechnic University Brooklyn, NY 11201 Abstract Delta compression techniques are commonly used to succinctly represent an updated ver- sion of a file with respect to an earlier one. In this paper, we study the use of delta compression in a somewhat different scenario, where we wish to compress a large collection of (more or less) related files by performing a sequence of pairwise delta compressions. The problem of finding an optimal delta encoding for a collection of files by taking pairwise deltas can be re- duced to the problem of computing a branching of maximum weight in a weighted directed graph, but this solution is inefficient and thus does not scale to larger file collections. This motivates us to propose a framework for cluster-based delta compression that uses text clus- tering techniques to prune the graph of possible pairwise delta encodings. To demonstrate the efficacy of our approach, we present experimental results on collections of web pages. Our experiments show that cluster-based delta compression of collections provides significant im- provements in compression ratio as compared to individually compressing each file or using tar+gzip, at a moderate cost in efficiency. A shorter version of this paper appears in the Proceedings of the 3rd International Con- ference on Web Information Systems Engineering (WISE), December 2002. -
A Brief Introduction to Unix-2019-AMS
Brief Intro to Linux/Unix Brief Intro to Unix (contd) A Brief Introduction to o Brief History of Unix o Compilers, Email, Text processing o Basics of a Unix session o Image Processing Linux/Unix – AMS 2019 o The Unix File System Pete Pokrandt o Working with Files and Directories o The vi editor UW-Madison AOS Systems Administrator o Your Environment [email protected] o Common Commands Twitter @PTH1 History of Unix History of Unix History of Unix o Created in 1969 by Kenneth Thompson and Dennis o Today – two main variants, but blended o It’s been around for a long time Ritchie at AT&T o Revised in-house until first public release 1977 o System V (Sun Solaris, SGI, Dec OSF1, AIX, o It was written by computer programmers for o 1977 – UC-Berkeley – Berkeley Software Distribution (BSD) linux) computer programmers o 1983 – Sun Workstations produced a Unix Workstation o BSD (Old SunOS, linux, Mac OSX/MacOS) o Case sensitive, mostly lowercase o AT&T unix -> System V abbreviations 1 Basics of a Unix Login Session Basics of a Unix Login Session Basics of a Unix Login Session o The Shell – the command line interface, o Features provided by the shell o Logging in to a unix session where you enter commands, etc n Create an environment that meets your needs n login: username n Some common shells n Write shell scripts (batch files) n password: tImpAw$ n Define command aliases (this Is my password At work $) Bourne Shell (sh) OR n Manipulate command history IHateHaving2changeMypasswordevery3weeks!!! C Shell (csh) n Automatically complete the command -
Getting to Grips with Unix and the Linux Family
Getting to grips with Unix and the Linux family David Chiappini, Giulio Pasqualetti, Tommaso Redaelli Torino, International Conference of Physics Students August 10, 2017 According to the booklet At this end of this session, you can expect: • To have an overview of the history of computer science • To understand the general functioning and similarities of Unix-like systems • To be able to distinguish the features of different Linux distributions • To be able to use basic Linux commands • To know how to build your own operating system • To hack the NSA • To produce the worst software bug EVER According to the booklet update At this end of this session, you can expect: • To have an overview of the history of computer science • To understand the general functioning and similarities of Unix-like systems • To be able to distinguish the features of different Linux distributions • To be able to use basic Linux commands • To know how to build your own operating system • To hack the NSA • To produce the worst software bug EVER A first data analysis with the shell, sed & awk an interactive workshop 1 at the beginning, there was UNIX... 2 ...then there was GNU 3 getting hands dirty common commands wait till you see piping 4 regular expressions 5 sed 6 awk 7 challenge time What's UNIX • Bell Labs was a really cool place to be in the 60s-70s • UNIX was a OS developed by Bell labs • they used C, which was also developed there • UNIX became the de facto standard on how to make an OS UNIX Philosophy • Write programs that do one thing and do it well. -
Unix/Linux Command Reference
Unix/Linux Command Reference .com File Commands System Info ls – directory listing date – show the current date and time ls -al – formatted listing with hidden files cal – show this month's calendar cd dir - change directory to dir uptime – show current uptime cd – change to home w – display who is online pwd – show current directory whoami – who you are logged in as mkdir dir – create a directory dir finger user – display information about user rm file – delete file uname -a – show kernel information rm -r dir – delete directory dir cat /proc/cpuinfo – cpu information rm -f file – force remove file cat /proc/meminfo – memory information rm -rf dir – force remove directory dir * man command – show the manual for command cp file1 file2 – copy file1 to file2 df – show disk usage cp -r dir1 dir2 – copy dir1 to dir2; create dir2 if it du – show directory space usage doesn't exist free – show memory and swap usage mv file1 file2 – rename or move file1 to file2 whereis app – show possible locations of app if file2 is an existing directory, moves file1 into which app – show which app will be run by default directory file2 ln -s file link – create symbolic link link to file Compression touch file – create or update file tar cf file.tar files – create a tar named cat > file – places standard input into file file.tar containing files more file – output the contents of file tar xf file.tar – extract the files from file.tar head file – output the first 10 lines of file tar czf file.tar.gz files – create a tar with tail file – output the last 10 lines