EGR1 Transcription Factor Is a Multifaceted Regulator of Matrix Production in Tendons and Other Connective Tissues
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Basic Histology and Connective Tissue Chapter 5
Basic Histology and Connective Tissue Chapter 5 • Histology, the Study of Tissues • Tissue Types • Connective Tissues Histology is the Study of Tissues • 200 different types of cells in the human body. • A Tissue consist of two or more types of cells that function together. • Four basic types of tissues: – epithelial tissue – connective tissue – muscular tissue – nervous tissue • An Organ is a structure with discrete boundaries that is composed of 2 or more tissue types. • Example: skin is an organ composed of epidermal tissue and dermal tissue. Distinguishing Features of Tissue Types • Types of cells (shapes and functions) • Arrangement of cells • Characteristics of the Extracellular Matrix: – proportion of water – types of fibrous proteins – composition of the ground substance • ground substance is the gelatinous material between cells in addition to the water and fibrous proteins • ground substance consistency may be liquid (plasma), rubbery (cartilage), stony (bone), elastic (tendon) • Amount of space occupied by cells versus extracellular matrix distinguishes connective tissue from other tissues – cells of connective tissues are widely separated by a large amount of extracellular matrix – very little extracellular matrix between the cells of epithelia, nerve, and muscle tissue Embryonic Tissues • An embryo begins as a single cell that divides into many cells that eventually forms 3 Primary Layers: – ectoderm (outer layer) • forms epidermis and nervous system – endoderm (inner layer) • forms digestive glands and the mucous membrane lining digestive tract and respiratory system – mesoderm (middle layer) • Forms muscle, bone, blood and other organs. Histotechnology • Preparation of specimens for histology: – preserve tissue in a fixative to prevent decay (formalin) – dehydrate in solvents like alcohol and xylene – embed in wax or plastic – slice into very thin sections only 1 or 2 cells thick – float slices on water and mount on slides and then add color with stains • Sectioning an organ or tissue reduces a 3-dimensional structure to a 2- dimensional slice. -
Activated Peripheral-Blood-Derived Mononuclear Cells
Transcription factor expression in lipopolysaccharide- activated peripheral-blood-derived mononuclear cells Jared C. Roach*†, Kelly D. Smith*‡, Katie L. Strobe*, Stephanie M. Nissen*, Christian D. Haudenschild§, Daixing Zhou§, Thomas J. Vasicek¶, G. A. Heldʈ, Gustavo A. Stolovitzkyʈ, Leroy E. Hood*†, and Alan Aderem* *Institute for Systems Biology, 1441 North 34th Street, Seattle, WA 98103; ‡Department of Pathology, University of Washington, Seattle, WA 98195; §Illumina, 25861 Industrial Boulevard, Hayward, CA 94545; ¶Medtronic, 710 Medtronic Parkway, Minneapolis, MN 55432; and ʈIBM Computational Biology Center, P.O. Box 218, Yorktown Heights, NY 10598 Contributed by Leroy E. Hood, August 21, 2007 (sent for review January 7, 2007) Transcription factors play a key role in integrating and modulating system. In this model system, we activated peripheral-blood-derived biological information. In this study, we comprehensively measured mononuclear cells, which can be loosely termed ‘‘macrophages,’’ the changing abundances of mRNAs over a time course of activation with lipopolysaccharide (LPS). We focused on the precise mea- of human peripheral-blood-derived mononuclear cells (‘‘macro- surement of mRNA concentrations. There is currently no high- phages’’) with lipopolysaccharide. Global and dynamic analysis of throughput technology that can precisely and sensitively measure all transcription factors in response to a physiological stimulus has yet to mRNAs in a system, although such technologies are likely to be be achieved in a human system, and our efforts significantly available in the near future. To demonstrate the potential utility of advanced this goal. We used multiple global high-throughput tech- such technologies, and to motivate their development and encour- nologies for measuring mRNA levels, including massively parallel age their use, we produced data from a combination of two distinct signature sequencing and GeneChip microarrays. -
Inhibitor of Differentiation 4 (ID4) Represses Myoepithelial Differentiation Of
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.06.026963; this version posted April 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Inhibitor of Differentiation 4 (ID4) represses myoepithelial differentiation of 2 mammary stem cells through its interaction with HEB 3 Holly Holliday1,2, Daniel Roden1,2, Simon Junankar1,2, Sunny Z. Wu1,2, Laura A. 4 Baker1,2, Christoph Krisp3,4, Chia-Ling Chan1, Andrea McFarland1, Joanna N. Skhinas1, 5 Thomas R. Cox1,2, Bhupinder Pal5, Nicholas Huntington6, Christopher J. Ormandy1,2, 6 Jason S. Carroll7, Jane Visvader5, Mark P. Molloy3, Alexander Swarbrick1,2 7 1. The Kinghorn Cancer Centre, Garvan Institute of Medical Research, Sydney, 8 NSW 2010, Australia 9 2. St Vincent's Clinical School, Faculty of Medicine, UNSW Sydney, Sydney, NSW 10 2010, Australia 11 3. Australian Proteome Analysis Facility, Macquarie University, Sydney, NSW 12 2109, Australia 13 4. Institute of Clinical Chemistry and Laboratory Medicine, Mass Spectrometric 14 Proteomics, University Medical Center Hamburg-Eppendorf, Hamburg 20251, 15 Germany 16 5. ACRF Stem Cells and Cancer Division, The Walter and Eliza Hall Institute of 17 Medical Research, Parkville, Victoria 3052, Australia 18 6. Biomedicine Discovery Institute, Department of Biochemistry and Molecular 19 Biology, Monash University, Clayton, VIC 3168, Australia 20 7. Cancer Research UK Cambridge Institute, University of Cambridge, Robinson 21 Way, Cambridge CB2 0RE, UK 22 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.06.026963; this version posted April 6, 2020. -
Expression of Oncogenes ELK1 and ELK3 in Cancer
Review Article Annals of Colorectal Cancer Research Published: 11 Nov, 2019 Expression of Oncogenes ELK1 and ELK3 in Cancer Akhlaq Ahmad and Asif Hayat* College of Chemistry, Fuzhou University, China Abstract Cancer is the uncontrolled growth of abnormal cells anywhere in a body, ELK1 and ELK3 is a member of the Ets-domain transcription factor family and the TCF (Ternary Complex Factor) subfamily. Proteins in this subfamily regulate transcription when recruited by SRF (Serum Response Factor) to bind to serum response elements. ELK1 and ELK3 transcription factors are known as oncogenes. Both transcription factors are proliferated in a different of type of cancer. Herein, we summarized the expression of transcription factor ELK1 and ELK3 in cancer cells. Keywords: ETS; ELK1; ELK3; Transcription factor; Cancer Introduction The ETS, a transcription factor of E twenty-six family based on a dominant ETS amino acids that integrated with a ~10-basepair element arrange in highly mid core sequence 5′-GGA(A/T)-3′ [1-2]. The secular family alter enormous 28/29 members which has been assigned in human and mouse and similarly the family description are further sub-divided into nine sub-families according to their homology and domain factor [3]. More importantly, one of the subfamily members such as ELK (ETS-like) adequate an N-terminal ETS DNA-binding domain along with a B-box domain that transmit the response of serum factor upon the formation of ternary complex and therefore manifested as ternary complex factors [4]. Further the ELK sub-divided into Elk1, Elk3 (Net, Erp or Sap2) and Elk4 (Sap1) proteins [3,4], which simulated varied proportional of potential protein- protein interactions [4,5]. -
Tendon Fibroblasts
Ann Rheum Dis: first published as 10.1136/ard.46.5.385 on 1 May 1987. Downloaded from Annals of the Rheumatic Diseases, 1987; 46, 385-390 Isolation and growth characteristics of adult human tendon fibroblasts M D CHARD, J K WRIGHT, AND B L HAZLEMAN From the Rheumatology Research Unit, Addenbrooke's Hospital, Hills Road, Cambridge SUMMARY An explant method for the isolation of fibroblasts from adult human tendon is described. Cells were successfully isolated from 22 out of 27 common biceps tendons obtained from cadaveric donors (age range 11-83 years). The fibroblasts could be maintained in culture using standard methods and morphologically resembled those of synovial rather than dermal origin. Growth characteristics of 12 cell lines were assessed by deoxyribose nucleic acid (DNA) synthesis using [3H]thymidine incorporation in response to stimulation by fetal calf serum. Cells obtained separately from superficial and deep parts of the tendons produced almost identical responses. No significant reduction in growth response with increasing age was found when related to the age of the donor. Therefore this study did not show any age related defect in the short term tendon fibroblast replicative responses to serum. Key words: in vitro, DNA synthesis. copyright. Tendinous lesions are common, but their nature and other tissues such as skin. It is desirable to investi- any possible predisposing factors are not well gate adult human tendon fibroblasts directly. It was understood. They occur in middle life frequently thought that the culture of adult human tendon after only minor, if any, injury. The extent to which fibroblasts would be very difficult to achieve be- this reflects age related changes in tendon tissue is cause of the differentiated appearance of cells on uncertain. -
An Interactive Web Application to Explore Regeneration-Associated Gene Expression and Chromatin Accessibility
Supplementary Materials Regeneration Rosetta: An interactive web application to explore regeneration-associated gene expression and chromatin accessibility Andrea Rau, Sumona P. Dhara, Ava J. Udvadia, Paul L. Auer 1. Table S1. List of cholesterol metabolic genes from MGI database 2. Table S2. List of differentially expressed transcripts during optic nerve regeneration in zebrafish using the MGI cholesterol metabolic gene queries in the Regeneration Rosetta app 3. Table S3. List of transcription factor encoding genes from brain cell bodies following spinal cord injury in lamprey over a course of 12 weeKs 4. Table S4. List of transcription factor encoding genes from spinal cell bodies following spinal cord injury in lamprey over a course of 12 weeks Ensembl ID MGI Gene ID Symbol Name ENSMUSG00000015243 MGI:99607 Abca1 ATP-binding cassette, sub-family A (ABC1), member 1 ENSMUSG00000026944 MGI:99606 Abca2 ATP-binding cassette, sub-family A (ABC1), member 2 ENSMUSG00000024030 MGI:107704 Abcg1 ATP binding cassette subfamily G member 1 ENSMUSG00000026003 MGI:87866 Acadl acyl-Coenzyme A dehydrogenase, long-chain ENSMUSG00000018574 MGI:895149 Acadvl acyl-Coenzyme A dehydrogenase, very long chain ENSMUSG00000038641 MGI:2384785 Akr1d1 aldo-keto reductase family 1, member D1 ENSMUSG00000028553 MGI:1353627 Angptl3 angiopoietin-like 3 ENSMUSG00000031996 MGI:88047 Aplp2 amyloid beta (A4) precursor-like protein 2 ENSMUSG00000032083 MGI:88049 Apoa1 apolipoprotein A-I ENSMUSG00000005681 MGI:88050 Apoa2 apolipoprotein A-II ENSMUSG00000032080 MGI:88051 Apoa4 -
New Approaches to Functional Process Discovery in HPV 16-Associated Cervical Cancer Cells by Gene Ontology
Cancer Research and Treatment 2003;35(4):304-313 New Approaches to Functional Process Discovery in HPV 16-Associated Cervical Cancer Cells by Gene Ontology Yong-Wan Kim, Ph.D.1, Min-Je Suh, M.S.1, Jin-Sik Bae, M.S.1, Su Mi Bae, M.S.1, Joo Hee Yoon, M.D.2, Soo Young Hur, M.D.2, Jae Hoon Kim, M.D.2, Duck Young Ro, M.D.2, Joon Mo Lee, M.D.2, Sung Eun Namkoong, M.D.2, Chong Kook Kim, Ph.D.3 and Woong Shick Ahn, M.D.2 1Catholic Research Institutes of Medical Science, 2Department of Obstetrics and Gynecology, College of Medicine, The Catholic University of Korea, Seoul; 3College of Pharmacy, Seoul National University, Seoul, Korea Purpose: This study utilized both mRNA differential significant genes of unknown function affected by the display and the Gene Ontology (GO) analysis to char- HPV-16-derived pathway. The GO analysis suggested that acterize the multiple interactions of a number of genes the cervical cancer cells underwent repression of the with gene expression profiles involved in the HPV-16- cancer-specific cell adhesive properties. Also, genes induced cervical carcinogenesis. belonging to DNA metabolism, such as DNA repair and Materials and Methods: mRNA differential displays, replication, were strongly down-regulated, whereas sig- with HPV-16 positive cervical cancer cell line (SiHa), and nificant increases were shown in the protein degradation normal human keratinocyte cell line (HaCaT) as a con- and synthesis. trol, were used. Each human gene has several biological Conclusion: The GO analysis can overcome the com- functions in the Gene Ontology; therefore, several func- plexity of the gene expression profile of the HPV-16- tions of each gene were chosen to establish a powerful associated pathway, identify several cancer-specific cel- cervical carcinogenesis pathway. -
Wound Classification
Wound Classification Presented by Dr. Karen Zulkowski, D.N.S., RN Montana State University Welcome! Thank you for joining this webinar about how to assess and measure a wound. 2 A Little About Myself… • Associate professor at Montana State University • Executive editor of the Journal of the World Council of Enterstomal Therapists (JWCET) and WCET International Ostomy Guidelines (2014) • Editorial board member of Ostomy Wound Management and Advances in Skin and Wound Care • Legal consultant • Former NPUAP board member 3 Today We Will Talk About • How to assess a wound • How to measure a wound Please make a note of your questions. Your Quality Improvement (QI) Specialists will follow up with you after this webinar to address them. 4 Assessing and Measuring Wounds • You completed a skin assessment and found a wound. • Now you need to determine what type of wound you found. • If it is a pressure ulcer, you need to determine the stage. 5 Assessing and Measuring Wounds This is important because— • Each type of wound has a different etiology. • Treatment may be very different. However— • Not all wounds are clear cut. • The cause may be multifactoral. 6 Types of Wounds • Vascular (arterial, venous, and mixed) • Neuropathic (diabetic) • Moisture-associated dermatitis • Skin tear • Pressure ulcer 7 Mixed Etiologies Many wounds have mixed etiologies. • There may be both venous and arterial insufficiency. • There may be diabetes and pressure characteristics. 8 Moisture-Associated Skin Damage • Also called perineal dermatitis, diaper rash, incontinence-associated dermatitis (often confused with pressure ulcers) • An inflammation of the skin in the perineal area, on and between the buttocks, into the skin folds, and down the inner thighs • Scaling of the skin with papule and vesicle formation: – These may open, with “weeping” of the skin, which exacerbates skin damage. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Spider Silk for Tissue Engineering Applications
molecules Review Spider Silk for Tissue Engineering Applications Sahar Salehi 1, Kim Koeck 1 and Thomas Scheibel 1,2,3,4,5,* 1 Department for Biomaterials, University of Bayreuth, Prof.-Rüdiger-Bormann-Strasse 1, 95447 Bayreuth, Germany; [email protected] (S.S.); [email protected] (K.K.) 2 The Bayreuth Center for Colloids and Interfaces (BZKG), University of Bayreuth, Universitätsstraße 30, 95447 Bayreuth, Germany 3 The Bayreuth Center for Molecular Biosciences (BZMB), University of Bayreuth, Universitätsstraße 30, 95447 Bayreuth, Germany 4 The Bayreuth Materials Center (BayMAT), University of Bayreuth, Universitätsstraße 30, 95447 Bayreuth, Germany 5 Bavarian Polymer Institute (BPI), University of Bayreuth, Universitätsstraße 30, 95447 Bayreuth, Germany * Correspondence: [email protected]; Tel.: +49-0-921-55-6700 Received: 15 January 2020; Accepted: 6 February 2020; Published: 8 February 2020 Abstract: Due to its properties, such as biodegradability, low density, excellent biocompatibility and unique mechanics, spider silk has been used as a natural biomaterial for a myriad of applications. First clinical applications of spider silk as suture material go back to the 18th century. Nowadays, since natural production using spiders is limited due to problems with farming spiders, recombinant production of spider silk proteins seems to be the best way to produce material in sufficient quantities. The availability of recombinantly produced spider silk proteins, as well as their good processability has opened the path towards modern biomedical applications. Here, we highlight the research on spider silk-based materials in the field of tissue engineering and summarize various two-dimensional (2D) and three-dimensional (3D) scaffolds made of spider silk. -
Review the Cellular Matrix: a Feature of Tensile Bearing Dense Soft
Histol Histopathol (2002) 17: 523-537 Histology and http://www.hh.um.es Histopathology Cellular and Molecular Biology Review The cellular matrix: a feature of tensile bearing dense soft connective tissues I.K. Lo, S. Chi, T. Ivie, C.B. Frank and J.B. Rattner Joint Injury and Arthritis Research Group, University of Calgary, Calgary, Canada S u m m a r y. The term connective tissue encompasses a recent studies using a variety of microscopic and indirect d iverse group of tissues that reside in diff e r e n t immunofluorescence techniques suggest that these e nvironments and must support a spectrum of apparently diverse groups of tissues, which are mechanical functions. Although the extracellular matrix characterized by a spectrum of functions and in vivo of these tissues is well described, the cellular mechanical environments, are organized around similar architecture of these tissues and its relationship to tissue architectural principles. function has only recently become the focus of study. It The purpose of this rev i ew is to highlight recent n ow appears that tensile-bearing dense connective d evelopments in our understanding of the cellular tissues may be a specific class of connective tissues that architecture of dense soft connective tissues and to display a common cellular organization characterized by discuss their functional implications. It will become fusiform cells with cytoplasmic projections and ga p clear that a 3-dimensional cellular arrangement, a junctions. These cells with their cellular projections are “cellular matrix”, consisting of fusiform cells with organised into a complex 3-dimensional network leading cytoplasmic projections and gap junctions may define a to a phy s i c a l l y, chemically and electrically connected s p e c i fic class of hy p o c e l l u l a r, tensile-bearing, dense cellular matrix. -
Regulatory Micrornas in Brown, Brite and White Adipose Tissue
cells Review Regulatory microRNAs in Brown, Brite and White Adipose Tissue Seley Gharanei 1,2, Kiran Shabir 3 , James E. Brown 3,4, Martin O. Weickert 1,2,5 , 1,2 1,2,3, 1,2,3, , Thomas M. Barber , Ioannis Kyrou y and Harpal S. Randeva * y 1 Warwickshire Institute for the Study of Diabetes, Endocrinology and Metabolism (WISDEM), University Hospitals Coventry and Warwickshire NHS Trust, Coventry CV2 2DX, UK; [email protected] (S.G.); [email protected] (M.O.W.); [email protected] (T.M.B.); [email protected] (I.K.) 2 Warwick Medical School, University of Warwick, Coventry CV4 7AL, UK 3 Aston Medical Research Institute, Aston Medical School, College of Health and Life Sciences, Aston University, Birmingham B4 7ET, UK; [email protected] (K.S.); [email protected] (J.E.B.) 4 School of Biosciences, College of Health and Life Sciences, Aston University, Birmingham B4 7ET, UK 5 Centre of Applied Biological & Exercise Sciences, Faculty of Health & Life Sciences, Coventry University, Coventry CV1 5FB, UK * Correspondence: [email protected] Joint senior authors; contributed equally to the manuscript. y Received: 30 September 2020; Accepted: 13 November 2020; Published: 16 November 2020 Abstract: MicroRNAs (miRNAs) constitute a class of short noncoding RNAs which regulate gene expression by targeting messenger RNA, inducing translational repression and messenger RNA degradation. This regulation of gene expression by miRNAs in adipose tissue (AT) can impact on the regulation of metabolism and energy homeostasis, particularly considering the different types of adipocytes which exist in mammals, i.e., white adipocytes (white AT; WAT), brown adipocytes (brown AT; BAT), and inducible brown adipocytes in WAT (beige or brite or brown-in-white adipocytes).