NOTES an Updated Checklist of the Discomycetes for the Dominican Republic and the Caribbean Region
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Chorioactidaceae: a New Family in the Pezizales (Ascomycota) with Four Genera
mycological research 112 (2008) 513–527 journal homepage: www.elsevier.com/locate/mycres Chorioactidaceae: a new family in the Pezizales (Ascomycota) with four genera Donald H. PFISTER*, Caroline SLATER, Karen HANSENy Harvard University Herbaria – Farlow Herbarium of Cryptogamic Botany, Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Avenue, Cambridge, MA 02138, USA article info abstract Article history: Molecular phylogenetic and comparative morphological studies provide evidence for the Received 15 June 2007 recognition of a new family, Chorioactidaceae, in the Pezizales. Four genera are placed in Received in revised form the family: Chorioactis, Desmazierella, Neournula, and Wolfina. Based on parsimony, like- 1 November 2007 lihood, and Bayesian analyses of LSU, SSU, and RPB2 sequence data, Chorioactidaceae repre- Accepted 29 November 2007 sents a sister clade to the Sarcosomataceae, to which some of these taxa were previously Corresponding Editor: referred. Morphologically these genera are similar in pigmentation, excipular construction, H. Thorsten Lumbsch and asci, which mostly have terminal opercula and rounded, sometimes forked, bases without croziers. Ascospores have cyanophilic walls or cyanophilic surface ornamentation Keywords: in the form of ridges or warts. So far as is known the ascospores and the cells of the LSU paraphyses of all species are multinucleate. The six species recognized in these four genera RPB2 all have limited geographical distributions in the northern hemisphere. Sarcoscyphaceae ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Sarcosomataceae SSU Introduction indicated a relationship of these taxa to the Sarcosomataceae and discussed the group as the Chorioactis clade. Only six spe- The Pezizales, operculate cup-fungi, have been put on rela- cies are assigned to these genera, most of which are infre- tively stable phylogenetic footing as summarized by Hansen quently collected. -
Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Structural Characterization and Biological Activity of Lactarius Scrobiculatus
Structural characterization and biological activity of Lactarius scrobiculatus Ivana Tomic Thesis for the Master´ degree in Pharmacy 45 study points Department of Pharmaceutical Chemistry School of Pharmacy Faculty of Mathematics and Natural Sciences UNIVERSITY OF OSLO November/2018 II Structural characterization and biological activity of Lactarius scrobiculatus Thesis for Master´ degree in Pharmacy Department for Pharmaceutical chemistry School of Pharmacy Faculty of Mathematics and Natural Sciences University in Oslo Ivana Tomic November 2018 Supervisor: Anne Berit Samuelsen III © Author 2018 Structural characterization and biological activity of Lactarius scrobiculatus Ivana Tomic http://www.duo.uio.no/ Print: Reprosentralen, Universitetet i Oslo IV Acknowledgments The present thesis was carried out at the Departement of Pharmaceutical Chemistry, University of Oslo (UiO), for the Master´s degree in Pharmacy at the University of Oslo. The other institute include Norwegian Centre of Molecular Medicine, where I have performed activity assay. First and foremost, I would like to thank to my supervisor Anne Berit Samuelsen for hers support and guidance throughout my work and useful comments during the writing. Further, I also want to thank Hoai Thi Nguyen and Cristian Winther Wold for help with carrying out GC and GC-MS analysis. Also, I am very thankful to Karl Malterud for help with NMR analysis. Special thanks to Suthajini Yogarajah for her patience and lab support. I would also like to thank to Kari Inngjerdingen for good and helpful Forskningforberedende kurs. My gratitude goes also to Prebens Morth group at NMCC, special to Julia Weikum and Bojana Sredic, who were always kind and helpful. Finally, I would like to express my fabulous thanks to my wonderful parents, my husband and my four sons for their great patience, sacrifice, moral support and encouragement during my master thesis. -
The 2014 Patrice Benson Memorial NAMA Foray October 9-12, 2014
VOLUME 54: 3 May-June 2014 www.namyco.org he 2014 Patrice Benson Memorial NAMA Foray atonville, Washington TE ctober 9-12, 2014 It’s the momentO you’ve all been waiting for—registration time for the 2014 NAMA Foray! Registration will open Monday, May 12 at 9 a.m. Pacific time. Foray attendees and staff will be limited to 250 people, so be sure to register early to get your preferred choice of lodging and to reserve your spot in a pre-foray workshop. Registration will be handled online through the PSMS registration system at www.psms.org/nama2014. If you are unable to complete registration online and need a printed form, contact Pacita Roberts immediately at (206) 498-0922 or mail to: [email protected]. The foray begins Thursday evening, Oct. 9, with dinner and speakers, and ends on Sunday morning, Oct. 12, after the mushroom collection walk-through. The basic package includes 3 nights and 8 meals. The package in- cluding a pre-foray workshop or the trustees meeting starts 2 days earlier on Tuesday night, Oct. 7, and includes 5 nights and 14 meals. The actual workshops and trustees meeting occur on Wednesday, Oct. 8. Speakers Dr. Steve Trudell will serve as the foray mycologist, and he, along with program chair Milton Tam, have ar- ranged an amazing lineup of presenters for 2014. Although the list is not quite finalized, this stellar cast of faculty has already committed: Alissa Allen, Dr. Denis Benjamin, Dr. Michael Beug, Dr. Tom Bruns, Dr. Cathy Cripps, Dr. Jim Ginns, Dr. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Culturing and Direct DNA Extraction Find Different Fungi From
Research CulturingBlackwell Publishing Ltd. and direct DNA extraction find different fungi from the same ericoid mycorrhizal roots Tamara R. Allen1, Tony Millar1, Shannon M. Berch2 and Mary L. Berbee1 1Department of Botany, The University of British Columbia, Vancouver BC, V6T 1Z4, Canada; 2Ministry of Forestry, Research Branch Laboratory, 4300 North Road, Victoria, BC V8Z 5J3, Canada Summary Author for correspondence: • This study compares DNA and culture-based detection of fungi from 15 ericoid Mary L. Berbee mycorrhizal roots of salal (Gaultheria shallon), from Vancouver Island, BC Canada. Tel: (604) 822 2019 •From the 15 roots, we PCR amplified fungal DNAs and analyzed 156 clones that Fax: (604) 822 6809 Email: [email protected] included the internal transcribed spacer two (ITS2). From 150 different subsections of the same roots, we cultured fungi and analyzed their ITS2 DNAs by RFLP patterns Received: 28 March 2003 or sequencing. We mapped the original position of each root section and recorded Accepted: 3 June 2003 fungi detected in each. doi: 10.1046/j.1469-8137.2003.00885.x • Phylogenetically, most cloned DNAs clustered among Sebacina spp. (Sebaci- naceae, Basidiomycota). Capronia sp. and Hymenoscyphus erica (Ascomycota) pre- dominated among the cultured fungi and formed intracellular hyphal coils in resynthesis experiments with salal. •We illustrate patterns of fungal diversity at the scale of individual roots and com- pare cloned and cultured fungi from each root. Indicating a systematic culturing detection bias, Sebacina DNAs predominated in 10 of the 15 roots yet Sebacina spp. never grew from cultures from the same roots or from among the > 200 ericoid mycorrhizal fungi previously cultured from different roots from the same site. -
MMA MASTERLIST - Sorted by Taxonomy
MMA MASTERLIST - Sorted by Taxonomy Sunday, December 10, 2017 Page 1 of 86 Amoebozoa Mycetomycota Protosteliomycetes Protosteliales Ceratiomyxaceae Ceratiomyxa fruticulosa Ceratiomyxa fruticulosa var. fruticulosa Ceratiomyxa fruticulosa var. poroides Ceratiomyxa sp. Mycetozoa Myxogastrea Incertae Sedis in Myxogastrea Liceaceae Licea minima Stemonitidaceae Brefeldia maxima Comatricha pulchella Comatricha sp. Comatricha typhoides Stemonitis axifera Stemonitis fusca Stemonitis sp. Stemonitis splendens Chromista Oomycota Incertae Sedis in Oomycota Peronosporales Peronosporaceae Plasmopara viticola Pythiaceae Pythium deBaryanum Oomycetes Saprolegniales Saprolegniaceae Saprolegnia sp. Peronosporea Albuginales Albuginaceae Albugo candida Fungus Ascomycota Ascomycetes Boliniales Boliniaceae Camarops petersii Capnodiales Capnodiaceae Scorias spongiosa Diaporthales Gnomoniaceae Cryptodiaporthe corni Sydowiellaceae Stegophora ulmea Valsaceae Cryphonectria parasitica Valsella nigroannulata Elaphomycetales Elaphomycetaceae Elaphomyces granulatus Elaphomyces sp. Erysiphales Erysiphaceae Erysiphe aggregata Erysiphe cichoracearum Erysiphe polygoni Microsphaera extensa Phyllactinia guttata Podosphaera clandestina Uncinula adunca Uncinula necator Hysteriales Hysteriaceae Glonium stellatum Leotiales Bulgariaceae Crinula caliciiformis Crinula sp. Mycocaliciales Mycocaliciaceae Phaeocalicium polyporaeum Peltigerales Collemataceae Leptogium cyanescens Lobariaceae Sticta fimbriata Nephromataceae Nephroma helveticum Peltigeraceae Peltigera evansiana Peltigera -
Gyromitra Ambigua, Birchy Brook SECRETARY Nordic Ski Club Trails, Goose Bay, Labrador, August Jim Cornish AUDITOR 8, 2012
V OMPHALINISSN 1925-1858 Foray registration & information issue Vol. VI, No 3 Newsletter of Apr. 16, 2015 OMPHALINA OMPHALINA, newsletter of Foray Newfoundland & Labrador, has no fi xed schedule of publication, and no promise to appear again. Its primary purpose is to serve as a conduit of information to registrants of the upcoming foray and secondarily as a communications tool with members. Issues of OMPHALINA are archived in: is an amateur, volunteer-run, community, Library and Archives Canada’s Electronic Collection <http://epe. not-for-profi t organization with a mission to lac-bac.gc.ca/100/201/300/omphalina/index.html>, and organize enjoyable and informative amateur Centre for Newfoundland Studies, Queen Elizabeth II Library mushroom forays in Newfoundland and (printed copy also archived) <collections.mun.ca/cdm/search/ collection/omphalina/>. Labrador and disseminate the knowledge gained. The content is neither discussed nor approved by the Board of Directors. Therefore, opinions expressed do not represent the views of the Board, Webpage: www.nlmushrooms.ca the Corporation, the partners, the sponsors, or the members. Opinions are solely those of the authors and uncredited opinions solely those of the Editor. ADDRESS Foray Newfoundland & Labrador Please address comments, complaints, contributions to the self-appointed Editor, Andrus Voitk: 21 Pond Rd. Rocky Harbour NL seened AT gmail DOT com, A0K 4N0 CANADA … who eagerly invites contributions to OMPHALINA, dealing with any aspect even remotely related to mushrooms. E-mail: info AT nlmushrooms DOT ca Authors are guaranteed instant fame—fortune to follow. Authors retain copyright to all published material, and submission indicates permission to publish, subject to the usual editorial decisions. -
Toxic Fungi of Western North America
Toxic Fungi of Western North America by Thomas J. Duffy, MD Published by MykoWeb (www.mykoweb.com) March, 2008 (Web) August, 2008 (PDF) 2 Toxic Fungi of Western North America Copyright © 2008 by Thomas J. Duffy & Michael G. Wood Toxic Fungi of Western North America 3 Contents Introductory Material ........................................................................................... 7 Dedication ............................................................................................................... 7 Preface .................................................................................................................... 7 Acknowledgements ................................................................................................. 7 An Introduction to Mushrooms & Mushroom Poisoning .............................. 9 Introduction and collection of specimens .............................................................. 9 General overview of mushroom poisonings ......................................................... 10 Ecology and general anatomy of fungi ................................................................ 11 Description and habitat of Amanita phalloides and Amanita ocreata .............. 14 History of Amanita ocreata and Amanita phalloides in the West ..................... 18 The classical history of Amanita phalloides and related species ....................... 20 Mushroom poisoning case registry ...................................................................... 21 “Look-Alike” mushrooms ..................................................................................... -
Orbilia Ultrastructure, Character Evolution and Phylogeny of Pezizomycotina
Mycologia, 104(2), 2012, pp. 462–476. DOI: 10.3852/11-213 # 2012 by The Mycological Society of America, Lawrence, KS 66044-8897 Orbilia ultrastructure, character evolution and phylogeny of Pezizomycotina T.K. Arun Kumar1 INTRODUCTION Department of Plant Biology, University of Minnesota, St Paul, Minnesota 55108 Ascomycota is a monophyletic phylum (Lutzoni et al. 2004, James et al. 2006, Spatafora et al. 2006, Hibbett Rosanne Healy et al. 2007) comprising three subphyla, Taphrinomy- Department of Plant Biology, University of Minnesota, cotina, Saccharomycotina and Pezizomycotina (Su- St Paul, Minnesota 55108 giyama et al. 2006, Hibbett et al. 2007). Taphrinomy- Joseph W. Spatafora cotina, according to the current classification (Hibbett Department of Botany and Plant Pathology, Oregon et al. 2007), consists of four classes, Neolectomycetes, State University, Corvallis, Oregon 97331 Pneumocystidiomycetes, Schizosaccharomycetes, Ta- phrinomycetes, and an unplaced genus, Saitoella, Meredith Blackwell whose members are ecologically and morphologically Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana 70803 highly diverse (Sugiyama et al. 2006). Soil Clone Group 1, poorly known from geographically wide- David J. McLaughlin spread environmental samples and a single culture, Department of Plant Biology, University of Minnesota, was suggested as a fourth subphylum (Porter et al. St Paul, Minnesota 55108 2008). More recently however the group has been described as a new class of Taphrinomycotina, Archae- orhizomycetes (Rosling et al. 2011), based primarily on Abstract: Molecular phylogenetic analyses indicate information from rRNA sequences. The mode of that the monophyletic classes Orbiliomycetes and sexual reproduction in Taphrinomycotina is ascogen- Pezizomycetes are among the earliest diverging ous without the formation of ascogenous hyphae, and branches of Pezizomycotina, the largest subphylum except for the enigmatic, apothecium-producing of the Ascomycota. -
Castor, Pollux and Life Histories of Fungi'
Mycologia, 89(1), 1997, pp. 1-23. ? 1997 by The New York Botanical Garden, Bronx, NY 10458-5126 Issued 3 February 1997 Castor, Pollux and life histories of fungi' Donald H. Pfister2 1982). Nonetheless we have been indulging in this Farlow Herbarium and Library and Department of ritual since the beginning when William H. Weston Organismic and Evolutionary Biology, Harvard (1933) gave the first presidential address. His topic? University, Cambridge, Massachusetts 02138 Roland Thaxter of course. I want to take the oppor- tunity to talk about the life histories of fungi and especially those we have worked out in the family Or- Abstract: The literature on teleomorph-anamorph biliaceae. As a way to focus on the concepts of life connections in the Orbiliaceae and the position of histories, I invoke a parable of sorts. the family in the Leotiales is reviewed. 18S data show The ancient story of Castor and Pollux, the Dios- that the Orbiliaceae occupies an isolated position in curi, goes something like this: They were twin sons relationship to the other members of the Leotiales of Zeus, arising from the same egg. They carried out which have so far been studied. The following form many heroic exploits. They were inseparable in life genera have been studied in cultures derived from but each developed special individual skills. Castor ascospores of Orbiliaceae: Anguillospora, Arthrobotrys, was renowned for taming and managing horses; Pol- Dactylella, Dicranidion, Helicoon, Monacrosporium, lux was a boxer. Castor was killed and went to the Trinacrium and conidial types that are referred to as being Idriella-like. -
Ascomycete Fungi Species List
Ascomycete Fungi Species List Higher Classification1 Kingdom: Fungi, Phylum: Ascomycota Class (C:), Order (O:) and Family (F:) Scientific Name1 English Name(s)2 C: Geoglossomycetes (Earth Tongues) O: Geoglossales F: Geoglossaceae Trichoglossum hirsutum Black Earth Tongue C: Leotiomycetes O: Helotiales F: Bulgariaceae Bulgaria inquinans Black Bulgar F: Helotiaceae Chlorociboria aeruginascens Green Elfcup, Green Wood Cup, Green Stain Fungus F: Leotiaceae Leotia lubrica Jellybaby F: Vibrisseaceae Vibrissea truncorum O: Pezizales F: Helvellaceae Gyromitra infula Hooded False Morel, Elfin Saddle Helvella macropus Felt Saddle Fungus Helvella spp. Elfin Saddles F: Pyronemataceae Cheilymenia theleboloides Scutellinia scutellata Eyelash Cup F: Sarcoscyphaceae Cookeina speciosa Cookeina venezuelae C: Sordariomycetes O: Hypocreales F: Clavicipitaceae Ophiocordyceps melolonthae O: Xylariales F: Xylariaceae Daldinia sp. Xylaria globosa Xylaria hypoxylon Candlestick Fungus, Candlesnuff Fungus, Stag's Horn Fungus Xylaria polymorpha Dead Man's Fingers Xylaria spp. Xylocoremium sp. Page 1 of 2 Cloudbridge Nature Reserve, Costa Rica Last Updated: February 3, 2017 Ascomycete Fungi Species List NOTES: Short-forms: sp. = one species of the given genus identified; spp. = more than one of species of the given genus identified 1, Classification and scientific names based on current classifications as found on MycoBank (www.mycobank.org) 2, English names are not standardized for fungi and the English names provided are not considered the definitive names for the given species. English names were gathered from a variety of sources including mushroom identification books and various fungi related websites. Contributors: Major Contributor – Baptiste Saunier. Other Contributors – Ranzeth Gómez Navarro. Page 2 of 2 Cloudbridge Nature Reserve, Costa Rica Last Updated: February 3, 2017 .