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Delimiting Species in the Genus Otospermophilus (Rodentia: Sciuridae), Using Genetics, Ecology, and Morphology
bs_bs_banner Biological Journal of the Linnean Society, 2014, 113, 1136–1151. With 5 figures Delimiting species in the genus Otospermophilus (Rodentia: Sciuridae), using genetics, ecology, and morphology MARK A. PHUONG1*, MARISA C. W. LIM1, DANIEL R. WAIT1, KEVIN C. ROWE1,2 and CRAIG MORITZ1,3 1Department of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, 3101 Valley Life Science Building, Berkeley, CA 94720, USA 2Sciences Department, Museum Victoria, Melbourne, VIC 3001, Australia 3Research School of Biology, The Australian National University, Acton, ACT 0200, Australia Received 16 April 2014; revised 6 July 2014; accepted for publication 7 July 2014 We apply an integrative taxonomy approach to delimit species of ground squirrels in the genus Otospermophilus because the diverse evolutionary histories of organisms shape the existence of taxonomic characters. Previous studies of mitochondrial DNA from this group recovered three divergent lineages within Otospermophilus beecheyi separated into northern, central, and southern geographical populations, with Otospermophilus atricapillus nested within the southern lineage of O. beecheyi. To further evaluate species boundaries within this complex, we collected additional genetic data (one mitochondrial locus, 11 microsatellite markers, and 11 nuclear loci), environmental data (eight bioclimatic variables), and morphological data (23 skull measurements). We used the maximum number of possible taxa (O. atricapillus, Northern O. beecheyi, Central O. beecheyi, and Southern O. beecheyi) as our operational taxonomic units (OTUs) and examined patterns of divergence between these OTUs. Phenotypic measures (both environmental and morphological) showed little differentiation among OTUs. By contrast, all genetic datasets supported the evolutionary independence of Northern O. beecheyi, although they were less consistent in their support for other OTUs as distinct species. -
Special Publications Museum of Texas Tech University Number 63 18 September 2014
Special Publications Museum of Texas Tech University Number 63 18 September 2014 List of Recent Land Mammals of Mexico, 2014 José Ramírez-Pulido, Noé González-Ruiz, Alfred L. Gardner, and Joaquín Arroyo-Cabrales.0 Front cover: Image of the cover of Nova Plantarvm, Animalivm et Mineralivm Mexicanorvm Historia, by Francisci Hernández et al. (1651), which included the first list of the mammals found in Mexico. Cover image courtesy of the John Carter Brown Library at Brown University. SPECIAL PUBLICATIONS Museum of Texas Tech University Number 63 List of Recent Land Mammals of Mexico, 2014 JOSÉ RAMÍREZ-PULIDO, NOÉ GONZÁLEZ-RUIZ, ALFRED L. GARDNER, AND JOAQUÍN ARROYO-CABRALES Layout and Design: Lisa Bradley Cover Design: Image courtesy of the John Carter Brown Library at Brown University Production Editor: Lisa Bradley Copyright 2014, Museum of Texas Tech University This publication is available free of charge in PDF format from the website of the Natural Sciences Research Laboratory, Museum of Texas Tech University (nsrl.ttu.edu). The authors and the Museum of Texas Tech University hereby grant permission to interested parties to download or print this publication for personal or educational (not for profit) use. Re-publication of any part of this paper in other works is not permitted without prior written permission of the Museum of Texas Tech University. This book was set in Times New Roman and printed on acid-free paper that meets the guidelines for per- manence and durability of the Committee on Production Guidelines for Book Longevity of the Council on Library Resources. Printed: 18 September 2014 Library of Congress Cataloging-in-Publication Data Special Publications of the Museum of Texas Tech University, Number 63 Series Editor: Robert J. -
Sewall Wright's Adaptive Landscapes: 1932 Vs. 1988
Biol Philos (2008) 23:591–603 DOI 10.1007/s10539-008-9124-z Sewall Wright’s adaptive landscapes: 1932 vs. 1988 Massimo Pigliucci Received: 13 November 2007 / Accepted: 16 July 2008 / Published online: 6 August 2008 Ó Springer Science+Business Media B.V. 2008 Abstract Sewall Wright introduced the metaphor of evolution on ‘‘adaptive landscapes’’ in a pair of papers published in 1931 and 1932. The metaphor has been one of the most influential in modern evolutionary biology, although recent theo- retical advancements show that it is deeply flawed and may have actually created research questions that are not, in fact, fecund. In this paper I examine in detail what Wright actually said in the 1932 paper, as well as what he thought of the matter at the very end of his career, in 1988. While the metaphor is flawed, some of the problems which Wright was attempting to address are still with us today, and are in the process of being reformulated as part of a forthcoming Extended Evolutionary Synthesis. Keywords Adaptive landscapes Evolutionary theory Genetic drift Natural selection Á Á Á The idea of an adaptive landscape is arguably the most influential metaphor in evolutionary biology after Darwin’s own parallel between natural and artificial selection. It is commonly presented in textbooks (Hartl and Clark 1989; Futuyma 1998) and has inspired a wealth of (largely theoretical) research (Kauffman and Levin 1987; Conrad 1990; Schluter and Nychka 1994; Whitlock 1995; Coyne et al. 1997; Gavrilets 1997; Svensson and Sinervo 2000; Hadany and Beker 2003; Jones et al. 2004; Kramer and Donohue 2006; Prusinkiewicz et al. -
Changes at a Critical Branchpoint in the Anthocyanin Biosynthetic Pathway Underlie the Blue to Orange Flower Color Transition in Lysimachia Arvensis
fpls-12-633979 February 16, 2021 Time: 19:16 # 1 ORIGINAL RESEARCH published: 22 February 2021 doi: 10.3389/fpls.2021.633979 Changes at a Critical Branchpoint in the Anthocyanin Biosynthetic Pathway Underlie the Blue to Orange Flower Color Transition in Lysimachia arvensis Edited by: Mercedes Sánchez-Cabrera1*†‡, Francisco Javier Jiménez-López1‡, Eduardo Narbona2, Verónica S. Di Stilio, Montserrat Arista1, Pedro L. Ortiz1, Francisco J. Romero-Campero3,4, University of Washington, Karolis Ramanauskas5, Boris Igic´ 5, Amelia A. Fuller6 and Justen B. Whittall7 United States 1 2 Reviewed by: Department of Plant Biology and Ecology, Faculty of Biology, University of Seville, Seville, Spain, Department of Molecular 3 Stacey Smith, Biology and Biochemical Engineering, Pablo de Olavide University, Seville, Spain, Institute for Plant Biochemistry 4 University of Colorado Boulder, and Photosynthesis, University of Seville – Centro Superior de Investigación Científica, Seville, Spain, Department 5 United States of Computer Science and Artificial Intelligence, University of Seville, Seville, Spain, Department of Biological Science, 6 Carolyn Wessinger, University of Illinois at Chicago, Chicago, IL, United States, Department of Chemistry and Biochemistry, Santa Clara 7 University of South Carolina, University, Santa Clara, CA, United States, Department of Biology, College of Arts and Sciences, Santa Clara University, United States Santa Clara, CA, United States *Correspondence: Mercedes Sánchez-Cabrera Anthocyanins are the primary pigments contributing to the variety of flower colors among [email protected] angiosperms and are considered essential for survival and reproduction. Anthocyanins † ORCID: Mercedes Sánchez-Cabrera are members of the flavonoids, a broader class of secondary metabolites, of which orcid.org/0000-0002-3786-0392 there are numerous structural genes and regulators thereof. -
Mammal Species Native to the USA and Canada for Which the MIL Has an Image (296) 31 July 2021
Mammal species native to the USA and Canada for which the MIL has an image (296) 31 July 2021 ARTIODACTYLA (includes CETACEA) (38) ANTILOCAPRIDAE - pronghorns Antilocapra americana - Pronghorn BALAENIDAE - bowheads and right whales 1. Balaena mysticetus – Bowhead Whale BALAENOPTERIDAE -rorqual whales 1. Balaenoptera acutorostrata – Common Minke Whale 2. Balaenoptera borealis - Sei Whale 3. Balaenoptera brydei - Bryde’s Whale 4. Balaenoptera musculus - Blue Whale 5. Balaenoptera physalus - Fin Whale 6. Eschrichtius robustus - Gray Whale 7. Megaptera novaeangliae - Humpback Whale BOVIDAE - cattle, sheep, goats, and antelopes 1. Bos bison - American Bison 2. Oreamnos americanus - Mountain Goat 3. Ovibos moschatus - Muskox 4. Ovis canadensis - Bighorn Sheep 5. Ovis dalli - Thinhorn Sheep CERVIDAE - deer 1. Alces alces - Moose 2. Cervus canadensis - Wapiti (Elk) 3. Odocoileus hemionus - Mule Deer 4. Odocoileus virginianus - White-tailed Deer 5. Rangifer tarandus -Caribou DELPHINIDAE - ocean dolphins 1. Delphinus delphis - Common Dolphin 2. Globicephala macrorhynchus - Short-finned Pilot Whale 3. Grampus griseus - Risso's Dolphin 4. Lagenorhynchus albirostris - White-beaked Dolphin 5. Lissodelphis borealis - Northern Right-whale Dolphin 6. Orcinus orca - Killer Whale 7. Peponocephala electra - Melon-headed Whale 8. Pseudorca crassidens - False Killer Whale 9. Sagmatias obliquidens - Pacific White-sided Dolphin 10. Stenella coeruleoalba - Striped Dolphin 11. Stenella frontalis – Atlantic Spotted Dolphin 12. Steno bredanensis - Rough-toothed Dolphin 13. Tursiops truncatus - Common Bottlenose Dolphin MONODONTIDAE - narwhals, belugas 1. Delphinapterus leucas - Beluga 2. Monodon monoceros - Narwhal PHOCOENIDAE - porpoises 1. Phocoena phocoena - Harbor Porpoise 2. Phocoenoides dalli - Dall’s Porpoise PHYSETERIDAE - sperm whales Physeter macrocephalus – Sperm Whale TAYASSUIDAE - peccaries Dicotyles tajacu - Collared Peccary CARNIVORA (48) CANIDAE - dogs 1. Canis latrans - Coyote 2. -
Minnesota and Federal Prohibited and Noxious Plants List 6-22-2011
Minnesota and Federal Prohibited and Noxious Plants List 6-22-2011 Minnesota and Federal Prohibited and Noxious Plants by Scientific Name (compiled by the Minnesota DNR’s Invasive Species Program 6-22-2011) Key: FN – Federal noxious weed (USDA–Animal Plant Health Inspection Service) SN – State noxious weed (Minnesota Department of Agriculture) RN – Restricted noxious weed (Minnesota Department of Agriculture) PI – Prohibited invasive species (Minnesota Department of Natural Resources) PS – State prohibited weed seed (Minnesota Department of Agriculture) RS – State restricted weed seed (Minnesota Department of Agriculture) (See explanations of these classifications below the lists of species) Regulatory Scientific Name Common Name Classification Aquatic Plants: Azolla pinnata R. Brown mosquito fern, water velvet FN Butomus umbellatus Linnaeus flowering rush PI Caulerpa taxifolia (Vahl) C. Agardh Mediterranean strain (killer algae) FN Crassula helmsii (Kirk) Cockayne Australian stonecrop PI Eichomia azurea (Swartz) Kunth anchored water hyacinth, rooted water FN hyacinth Hydrilla verticillata (L. f.) Royle hydrilla FN, PI Hydrocharis morsus-ranae L. European frog-bit PI Hygrophila polysperma (Roxburgh) T. Anders Indian swampweed, Miramar weed FN, PI Ipomoea aquatica Forsskal water-spinach, swamp morning-glory FN Lagarosiphon major (Ridley) Moss ex Wagner African oxygen weed FN, PI Limnophila sessiliflora (Vahl) Blume ambulia FN Lythrum salicaria L., Lythrum virgatum L., (or any purple loosestrife PI, SN variety, hybrid or cultivar thereof) Melaleuca quenquinervia (Cav.) Blake broadleaf paper bank tree FN Monochoria hastata (Linnaeus) Solms-Laubach arrowleaf false pickerelweed FN Monochoria vaginalis (Burman f.) C. Presl heart-shaped false pickerelweed FN Myriophyllum spicatum Linnaeus Eurasian water mifoil PI Najas minor All. brittle naiad PI Ottelia alismoides (L.) Pers. -
The Vascular Flora of the Upper Santa Ana River Watershed, San Bernardino Mountains, California
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/281748553 THE VASCULAR FLORA OF THE UPPER SANTA ANA RIVER WATERSHED, SAN BERNARDINO MOUNTAINS, CALIFORNIA Article · January 2013 CITATIONS READS 0 28 6 authors, including: Naomi S. Fraga Thomas Stoughton Rancho Santa Ana B… Plymouth State Univ… 8 PUBLICATIONS 14 3 PUBLICATIONS 0 CITATIONS CITATIONS SEE PROFILE SEE PROFILE Available from: Thomas Stoughton Retrieved on: 24 November 2016 Crossosoma 37(1&2), 2011 9 THE VASCULAR FLORA OF THE UPPER SANTA ANA RIVER WATERSHED, SAN BERNARDINO MOUNTAINS, CALIFORNIA Naomi S. Fraga, LeRoy Gross, Duncan Bell, Orlando Mistretta, Justin Wood1, and Tommy Stoughton Rancho Santa Ana Botanic Garden 1500 North College Avenue Claremont, California 91711 1Aspen Environmental Group, 201 North First Avenue, Suite 102, Upland, California 91786 [email protected] All Photos by Naomi S. Fraga ABSTRACT: We present an annotated catalogue of the vascular flora of the upper Santa Ana River watershed, in the southern San Bernardino Mountains, in southern California. The catalogue is based on a floristic study, undertaken from 2008 to 2010. Approximately 65 team days were spent in the field and over 5,000 collections were made over the course of the study. The study area is ca. 155 km2 in area (40,000 ac) and ranges in elevation from 1402 m to 3033 m. The study area is botanically diverse with more than 750 taxa documented, including 56 taxa of conservation concern and 81 non-native taxa. Vegetation and habitat types in the area include chaparral, evergreen oak forest and woodland, riparian forest, coniferous forest, montane meadow, and pebble plain habitats. -
Appendix B Biological Resources Analysis
Appendix B Biological Resources Analysis INTENTIONALLY LEFT BLANK 38 NORTH MARENGO AVENUE PASADENA. CALIFORNIA 91101 T 626.204.9800 F 626.204.9834 MEMORANDUM From: Michael Cady – Senior Biologist Subject: Biological Resources Analysis for the Buena Vista Project Date: August 18, 2020 Attachment(s): A) Photo Exhibit; B) Google Earth Imagery of the Project Site; C) Plant Compendium; D) Wildlife Compendium; E) Sensitive Resources Databases Query Results; F) Historic California Natural Diversity Database Records; G) Special-Status Plant Species Potential to Occur; H) Special-Status Wildlife Species Potential to Occur; I) Historical Aerial Imagery of the Project Site from 1948; J) National Wetlands Inventory Results; K) Wildlife Corridors and Habitat Connectivity Exhibit; L) California Natural Community Conservation Plans This memorandum (memo) details the methodology and results of Dudek’s site visit and analysis for the potential occurrence of sensitive resources within the proposed Buena Vista Project (project). The Project site is located at 1030–1380 North Broadway and 1251 North Spring Street, within the vicinity of the Chinatown neighborhood, downtown Los Angeles, Lincoln Heights, and Dodger Stadium/Elysian Park. The analysis was conducted in support of the Initial Study (IS) for the project to determine if additional studies or analysis are necessary. Methodology A review of existing information and a site visit was conducted to determine the biological resources that are present or have potential to occur on and adjacent to the project site. Literature Review A literature review was conducted prior to the field visit to identify special-status biological resources present or potentially present within the vicinity of the project site using the following: • California Department of Fish and Wildlife (CDFW) California Natural Diversity Database (CNDDB) (CDFW 2020a) • California Native Plant Society’s (CNPS) Online Inventory of Rare and Endangered Vascular Plants (CNPS 2020) • U.S. -
Boraginaceae), with an Emphasis on the Popcornflowers (Plagiobothrys)
Diversification, biogeography, and classification of Amsinckiinae (Boraginaceae), with an emphasis on the popcornflowers (Plagiobothrys) By Christopher Matthew Guilliams A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Bruce G. Baldwin, Chair Professor David Ackerly Professor Brent Mishler Professor Patrick O'Grady Summer 2015 Abstract Diversification, biogeography, and classification of Amsinckiinae (Boraginaceae), with an emphasis on the popcornflowers (Plagiobothrys) by Christopher Matthew Guilliams Doctor of Philosophy in Integrative Biology University of California, Berkeley Professor Bruce G. Baldwin, Chair Amsinckiinae is a diverse and ecologically important subtribe of annual herbaceous or perennial suffrutescent taxa with centers of distribution in western North America and southern South America. Taxa in the subtribe occur in all major ecosystems in California and more broadly in western North America, from the deserts of Baja California in the south where Johnstonella and Pectocarya are common, north to the ephemeral wetland ecosystems of the California Floristic Province where a majority of Plagiobothrys sect. Allocarya taxa occur, and east to the Basin and Range Province of western North America, where Cryptantha sensu stricto (s.s.) and Oreocarya are well represented. The subtribe minimally includes 9 genera: Amsinckia, Cryptantha s.s., Eremocarya, Greeneocharis, Harpagonella, Johnstonella, Oreocarya, Pectocarya, and Plagiobothrys; overall minimum-rank taxonomic diversity in the subtribe is ca. 330-342 taxa, with ca. 245--257 taxa occurring in North America, 86 in South America, and 4 in Australia. Despite their prevalence on the landscape and a history of active botanical research for well over a century, considerable research needs remain in Amsinckiinae, especially in one of the two largest genera, Plagiobothrys. -
Biological Assessment, Botanical, and Burrowing Owl Survey for the Cajon Boulevard Warehouse Project, San Bernardino County, California
BIOLOGICAL ASSESSMENT, BOTANICAL, AND BURROWING OWL SURVEY FOR THE CAJON BOULEVARD WAREHOUSE PROJECT, SAN BERNARDINO COUNTY, CALIFORNIA ±20 Acre Property, ±20 Acres Surveyed APN’s: 026-204-109, 026-204-113, 026-204-118, 026-204-120 USGS 7.5-minute topographic Devore Quadrangle Township 1 North, Range 5 West, Section 2 Prepared For: Tracy Zinn T & B Planning 714-505-6360 Prepared By: L&L Environmental, Inc. Leslie Irish, CEO, Wetland Delineator [email protected] Guy Bruyea, Biologist [email protected] Julia Fox, Technical Editor [email protected] Survey Dates: December 11, 2017, March 6, 24, April 5, 6, 7, 8, 9, 16, 26, May 15, 23, June 5 and 16, 2018 Report Date: June 28, 2018 \\DARWIN\Shared Folders\L&L Documents\SERVER PROJECT FILES\UNIFIED PROJECTS\TB-17-606 Cajon Blvd\2018 BA1 BO1\Report\TB-17-R606.BA1.BO1 (final).doc Celebrating 20+ Years of Service to Southern CA and the Great Basin, WBE Certified (Caltrans, CPUC, WBENC) Mailing Address: 700 East Redlands Blvd, Suite U, PMB#351, Redlands CA 92373 Delivery Address: 721 Nevada Street, Suite 307, Redlands, CA 92373 Webpage: llenviroinc.com | Phone: 909-335-9897 | FAX: 909-335-9893 Biological Assessment, Botanical, and Burrowing Owl Survey Cajon Boulevard Warehouse, San Bernardino County, CA June 2018 Table of Contents SUMMARY ................................................................................................................................iii 1.0) INTRODUCTION ............................................................................................................... -
Introduction to Plant Identification
Plant Science Training Program www.cnps.org/workshops Introduction to Plant Identification 15 Common Plant Families of Southern California Dates: June 5-7, 2018 (Tuesday - Thursday) Location: San Bernardino Mountains - Big Bear area, CA Instructors: Sandy Namoff, Claremont Colleges Laboratory Coordinator; & Nick Jensen, CNPS Southern California Conservation Analyst Registration: $395 CNPS Members / $415 Non-Members All Photos © Nick Jensen Target Audience: This workshop will be taught at a beginner level and is open to anyone interested in learning about or improving their knowledge of plant terminology and the characteristics of common plant families, and becoming competent at plant keying using the Jepson Manual and online resources. Those just entering the world of plant identification will benefit from learning the diagnostic characteristics of the most important plant families in CA. Those with prior plant identification experience will be able to refresh their skills and increase their proficiency with more difficult groups such as the Poaceae (grasses) and Asteraceae (sunflowers). Emphasis will be placed on common groups of plants in Southern CA; however, information learned in this class will be readily applicable throughout CA and the world. Description: This is a 3-day introductory workshop. We will begin by teaching basic plant morphology with a focus on the structures necessary for plant ID. Participants will learn the specialized terminology necessary to identify plants in 15 common CA plant families. These families contain more than 5000 taxa, which account for more than 70% of the plant diversity in CA. Learning the characteristics of these plant families will reduce the amount of time required to key many plants to genus and species. -
Diet of the Mohave Ground Squirrel (Xerospermophilus Mohavensis) in Relation to Season and Rainfall
Western North American Naturalist 77(1), © 2017, pp. 1–13 DIET OF THE MOHAVE GROUND SQUIRREL (XEROSPERMOPHILUS MOHAVENSIS) IN RELATION TO SEASON AND RAINFALL Barbara M. Leitner1 and Philip Leitner2 ABSTRACT.—The Mohave ground squirrel (Xerospermophilus mohavensis) is endemic to the western Mojave Desert of California. It is listed as threatened under the California Endangered Species Act, yet there is little published information on its habitat requirements. We studied the diet of Mohave ground squirrels at 4 sites in desert scrub habitat in Inyo County, California, primarily by microhistological analysis of 754 samples of fecal pellets collected from live-trapped animals. Over all sites and seasons, shrub foliage was the largest component of the diet (39.8% relative density) and mainly derived from several taxa of Chenopodiaceae: winterfat (Krascheninnikovia lanata), spiny hopsage (Grayia spinosa), and saltbushes (Atriplex spp.). Forb leaves were next in importance (34.1% relative density), especially from Fabaceae (Astragalus and Lupinus), Polemoniaceae (Gilia and Linanthus), and Asteraceae. Flowers, pollen, and seeds were also major components (20.3% relative density). Leaves composed nearly all of the diet in spring, whereas pollen, flowers, and seeds made up about a third of the diet in summer. Following dry winters when annual forbs were limited, Mohave ground squirrels depended primarily on foliage from perennial shrubs and forbs. Following wet winters when spring annuals were abundant and most plant species flowered and set seed prolifically, squirrels consumed a high proportion of leaves plus flowers, pollen, and seeds of annual forbs. Mohave ground squirrels reproduced only after winter rainfall >80 mm that resulted in a standing crop of herbaceous annuals ≥100 kg ⋅ ha−1.