Complexity of Grundy Coloring and Its Variants Edouard Bonnet, Florent Foucaud, Eun Jung Kim, Florian Sikora
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A Fast and Scalable Graph Coloring Algorithm for Multi-Core and Many-Core Architectures
A Fast and Scalable Graph Coloring Algorithm for Multi-core and Many-core Architectures Georgios Rokos1, Gerard Gorman2, and Paul H J Kelly1 1 Software Peroformance Optimisation Group, Department of Computing 2 Applied Modelling and Computation Group, Department of Earth Science and Engineering Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom, fgeorgios.rokos09,g.gorman,[email protected] Abstract. Irregular computations on unstructured data are an impor- tant class of problems for parallel programming. Graph coloring is often an important preprocessing step, e.g. as a way to perform dependency analysis for safe parallel execution. The total run time of a coloring algo- rithm adds to the overall parallel overhead of the application whereas the number of colors used determines the amount of exposed parallelism. A fast and scalable coloring algorithm using as few colors as possible is vi- tal for the overall parallel performance and scalability of many irregular applications that depend upon runtime dependency analysis. C¸ataly¨ureket al. have proposed a graph coloring algorithm which relies on speculative, local assignment of colors. In this paper we present an improved version which runs even more optimistically with less thread synchronization and reduced number of conflicts compared to C¸ataly¨urek et al.'s algorithm. We show that the new technique scales better on multi- core and many-core systems and performs up to 1.5x faster than its pre- decessor on graphs with high-degree vertices, while keeping the number of colors at the same near-optimal levels. Keywords: Graph Coloring; Greedy Coloring; First-Fit Coloring; Ir- regular Data; Parallel Graph Algorithms; Shared-Memory Parallelism; Optimistic Execution; Many-core Architectures; Intel®Xeon Phi™ 1 Introduction Many modern applications are built around algorithms which operate on irreg- ular data structures, usually in form of graphs. -
I?'!'-Comparability Graphs
Discrete Mathematics 74 (1989) 173-200 173 North-Holland I?‘!‘-COMPARABILITYGRAPHS C.T. HOANG Department of Computer Science, Rutgers University, New Brunswick, NJ 08903, U.S.A. and B.A. REED Discrete Mathematics Group, Bell Communications Research, Morristown, NJ 07950, U.S.A. In 1981, Chv&tal defined the class of perfectly orderable graphs. This class of perfect graphs contains the comparability graphs. In this paper, we introduce a new class of perfectly orderable graphs, the &comparability graphs. This class generalizes comparability graphs in a natural way. We also prove a decomposition theorem which leads to a structural characteriza- tion of &comparability graphs. Using this characterization, we develop a polynomial-time recognition algorithm and polynomial-time algorithms for the clique and colouring problems for &comparability graphs. 1. Introduction A natural way to color the vertices of a graph is to put them in some order v*cv~<” l < v, and then assign colors in the following manner: (1) Consider the vertxes sequentially (in the sequence given by the order) (2) Assign to each Vi the smallest color (positive integer) not used on any neighbor vi of Vi with j c i. We shall call this the greedy coloring algorithm. An order < of a graph G is perfect if for each subgraph H of G, the greedy algorithm applied to H, gives an optimal coloring of H. An obstruction in a ordered graph (G, <) is a set of four vertices {a, b, c, d} with edges ab, bc, cd (and no other edge) and a c b, d CC. Clearly, if < is a perfect order on G, then (G, C) contains no obstruction (because the chromatic number of an obstruction is twu, but the greedy coloring algorithm uses three colors). -
The Complexity of Two Graph Orientation Problems
The Complexity of Two Graph Orientation Problems Nicole Eggemann∗ and Steven D. Noble† Department of Mathematical Sciences, Brunel University Kingston Lane Uxbridge UB8 3PH United Kingdom [email protected] and [email protected] November 8, 2018 Abstract We consider two orientation problems in a graph, namely the mini- mization of the sum of all the shortest path lengths and the minimization of the diameter. We show that it is NP-complete to decide whether a graph has an orientation such that the sum of all the shortest paths lengths is at most an integer specified in the input. The proof is a short reduction from a result of Chv´atal and Thomassen showing that it is NP-complete to decide whether a graph can be oriented so that its diameter is at most 2. In contrast, for each positive integer k, we describe a linear-time algo- rithm that decides for a planar graph G whether there is an orientation for which the diameter is at most k. We also extend this result from planar graphs to any minor-closed family F not containing all apex graphs. 1 Introduction We consider two problems concerned with orienting the edges of an undirected graph in order to minimize two global measures of distance in the resulting directed graph. Our work is motivated by an application involving the design of arXiv:1004.2478v1 [math.CO] 14 Apr 2010 urban light rail networks of the sort described in [22]. In such an application, a number of stations are to be linked with unidirectional track in order to minimize some function of the travel times between stations and subject to constraints on cost, engineering and planning. -
Arxiv:2104.09976V2 [Cs.CG] 2 Jun 2021
Finding Geometric Representations of Apex Graphs is NP-Hard Dibyayan Chakraborty* and Kshitij Gajjar† June 3, 2021 Abstract Planar graphs can be represented as intersection graphs of different types of geometric objects in the plane, e.g., circles (Koebe, 1936), line segments (Chalopin & Gonc¸alves, 2009), L-shapes (Gonc¸alves et al., 2018). For general graphs, however, even deciding whether such representations exist is often NP-hard. We consider apex graphs, i.e., graphs that can be made planar by removing one vertex from them. We show, somewhat surprisingly, that deciding whether geometric representations exist for apex graphs is NP-hard. More precisely, we show that for every positive integer k, recognizing every graph class G which satisfies PURE-2-DIR ⊆ G ⊆ 1-STRING is NP-hard, even when the input graphs are apex graphs of girth at least k. Here, PURE-2-DIR is the class of intersection graphs of axis-parallel line segments (where intersections are allowed only between horizontal and vertical segments) and 1-STRING is the class of intersection graphs of simple curves (where two curves share at most one point) in the plane. This partially answers an open question raised by Kratochv´ıl & Pergel (2007). Most known NP-hardness reductions for these problems are from variants of 3-SAT. We reduce from the PLANAR HAMILTONIAN PATH COMPLETION problem, which uses the more intuitive notion of planarity. As a result, our proof is much simpler and encapsulates several classes of geometric graphs. Keywords: Planar graphs, apex graphs, NP-hard, Hamiltonian path completion, recognition problems, geometric intersection graphs, 1-STRING, PURE-2-DIR. -
Characterizations of Graphs Without Certain Small Minors by J. Zachary
Characterizations of Graphs Without Certain Small Minors By J. Zachary Gaslowitz Dissertation Submitted to the Faculty of the Graduate School of Vanderbilt University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in Mathematics May 11, 2018 Nashville, Tennessee Approved: Mark Ellingham, Ph.D. Paul Edelman, Ph.D. Bruce Hughes, Ph.D. Mike Mihalik, Ph.D. Jerry Spinrad, Ph.D. Dong Ye, Ph.D. TABLE OF CONTENTS Page 1 Introduction . 2 2 Previous Work . 5 2.1 Planar Graphs . 5 2.2 Robertson and Seymour's Graph Minor Project . 7 2.2.1 Well-Quasi-Orderings . 7 2.2.2 Tree Decomposition and Treewidth . 8 2.2.3 Grids and Other Graphs with Large Treewidth . 10 2.2.4 The Structure Theorem and Graph Minor Theorem . 11 2.3 Graphs Without K2;t as a Minor . 15 2.3.1 Outerplanar and K2;3-Minor-Free Graphs . 15 2.3.2 Edge-Density for K2;t-Minor-Free Graphs . 16 2.3.3 On the Structure of K2;t-Minor-Free Graphs . 17 3 Algorithmic Aspects of Graph Minor Theory . 21 3.1 Theoretical Results . 21 3.2 Practical Graph Minor Containment . 22 4 Characterization and Enumeration of 4-Connected K2;5-Minor-Free Graphs 25 4.1 Preliminary Definitions . 25 4.2 Characterization . 30 4.3 Enumeration . 38 5 Characterization of Planar 4-Connected DW6-minor-free Graphs . 51 6 Future Directions . 91 BIBLIOGRAPHY . 93 1 Chapter 1 Introduction All graphs in this paper are finite and simple. Given a graph G, the vertex set of G is denoted V (G) and the edge set is denoted E(G). -
The Hadwiger Number, Chordal Graphs and Ab-Perfection Arxiv
The Hadwiger number, chordal graphs and ab-perfection∗ Christian Rubio-Montiel [email protected] Instituto de Matem´aticas, Universidad Nacional Aut´onomade M´exico, 04510, Mexico City, Mexico Department of Algebra, Comenius University, 84248, Bratislava, Slovakia October 2, 2018 Abstract A graph is chordal if every induced cycle has three vertices. The Hadwiger number is the order of the largest complete minor of a graph. We characterize the chordal graphs in terms of the Hadwiger number and we also characterize the families of graphs such that for each induced subgraph H, (1) the Hadwiger number of H is equal to the maximum clique order of H, (2) the Hadwiger number of H is equal to the achromatic number of H, (3) the b-chromatic number is equal to the pseudoachromatic number, (4) the pseudo-b-chromatic number is equal to the pseudoachromatic number, (5) the arXiv:1701.08417v1 [math.CO] 29 Jan 2017 Hadwiger number of H is equal to the Grundy number of H, and (6) the b-chromatic number is equal to the pseudo-Grundy number. Keywords: Complete colorings, perfect graphs, forbidden graphs characterization. 2010 Mathematics Subject Classification: 05C17; 05C15; 05C83. ∗Research partially supported by CONACyT-Mexico, Grants 178395, 166306; PAPIIT-Mexico, Grant IN104915; a Postdoctoral fellowship of CONACyT-Mexico; and the National scholarship programme of the Slovak republic. 1 1 Introduction Let G be a finite graph. A k-coloring of G is a surjective function & that assigns a number from the set [k] := 1; : : : ; k to each vertex of G.A k-coloring & of G is called proper if any two adjacent verticesf haveg different colors, and & is called complete if for each pair of different colors i; j [k] there exists an edge xy E(G) such that x &−1(i) and y &−1(j). -
Minor-Closed Graph Classes with Bounded Layered Pathwidth
Minor-Closed Graph Classes with Bounded Layered Pathwidth Vida Dujmovi´c z David Eppstein y Gwena¨elJoret x Pat Morin ∗ David R. Wood { 19th October 2018; revised 4th June 2020 Abstract We prove that a minor-closed class of graphs has bounded layered pathwidth if and only if some apex-forest is not in the class. This generalises a theorem of Robertson and Seymour, which says that a minor-closed class of graphs has bounded pathwidth if and only if some forest is not in the class. 1 Introduction Pathwidth and treewidth are graph parameters that respectively measure how similar a given graph is to a path or a tree. These parameters are of fundamental importance in structural graph theory, especially in Roberston and Seymour's graph minors series. They also have numerous applications in algorithmic graph theory. Indeed, many NP-complete problems are solvable in polynomial time on graphs of bounded treewidth [23]. Recently, Dujmovi´c,Morin, and Wood [19] introduced the notion of layered treewidth. Loosely speaking, a graph has bounded layered treewidth if it has a tree decomposition and a layering such that each bag of the tree decomposition contains a bounded number of vertices in each layer (defined formally below). This definition is interesting since several natural graph classes, such as planar graphs, that have unbounded treewidth have bounded layered treewidth. Bannister, Devanny, Dujmovi´c,Eppstein, and Wood [1] introduced layered pathwidth, which is analogous to layered treewidth where the tree decomposition is arXiv:1810.08314v2 [math.CO] 4 Jun 2020 required to be a path decomposition. -
On Graph Crossing Number and Edge Planarization∗
On Graph Crossing Number and Edge Planarization∗ Julia Chuzhoyy Yury Makarychevz Anastasios Sidiropoulosx Abstract Given an n-vertex graph G, a drawing of G in the plane is a mapping of its vertices into points of the plane, and its edges into continuous curves, connecting the images of their endpoints. A crossing in such a drawing is a point where two such curves intersect. In the Minimum Crossing Number problem, the goal is to find a drawing of G with minimum number of crossings. The value of the optimal solution, denoted by OPT, is called the graph's crossing number. This is a very basic problem in topological graph theory, that has received a significant amount of attention, but is still poorly understood algorithmically. The best currently known efficient algorithm produces drawings with O(log2 n) · (n + OPT) crossings on bounded-degree graphs, while only a constant factor hardness of approximation is known. A closely related problem is Minimum Planarization, in which the goal is to remove a minimum-cardinality subset of edges from G, such that the remaining graph is planar. Our main technical result establishes the following connection between the two problems: if we are given a solution of cost k to the Minimum Planarization problem on graph G, then we can efficiently find a drawing of G with at most poly(d) · k · (k + OPT) crossings, where d is the maximum degree in G. This result implies an O(n · poly(d) · log3=2 n)-approximation for Minimum Crossing Number, as well as improved algorithms for special cases of the problem, such as, for example, k-apex and bounded-genus graphs. -
Building a Larger Class of Graphs for Efficient Reconfiguration
Building a larger class of graphs for efficient reconfiguration of vertex colouring by Owen Merkel A thesis presented to the University of Waterloo in fulfillment of the thesis requirement for the degree of Master of Mathematics in Computer Science Waterloo, Ontario, Canada, 2020 c Owen Merkel 2020 This thesis consists of material all of which I authored or co-authored: see Statement of Contributions included in the thesis. This is a true copy of the thesis, including any required final revisions, as accepted by my examiners. I understand that my thesis may be made electronically available to the public. ii Statement of Contributions Owen Merkel is the sole author of Chapters 1, 2, 3, and 6 which were written under the supervision of Prof. Therese Biedl and Prof. Anna Lubiw and were not written for publication. Exceptions to sole authorship are Chapters 4 and 5, which is joint work with Prof. Therese Biedl and Prof. Anna Lubiw and consists in part of a manuscript written for publication. iii Abstract A k-colouring of a graph G is an assignment of at most k colours to the vertices of G so that adjacent vertices are assigned different colours. The reconfiguration graph of the k-colourings, Rk(G), is the graph whose vertices are the k-colourings of G and two colourings are joined by an edge in Rk(G) if they differ in colour on exactly one vertex. For a k-colourable graph G, we investigate the connectivity and diameter of Rk+1(G). It is known that not all weakly chordal graphs have the property that Rk+1(G) is connected. -
COLORING and DEGENERACY for DETERMINING VERY LARGE and SPARSE DERIVATIVE MATRICES ASHRAFUL HUQ SUNY Bachelor of Science, Chittag
COLORING AND DEGENERACY FOR DETERMINING VERY LARGE AND SPARSE DERIVATIVE MATRICES ASHRAFUL HUQ SUNY Bachelor of Science, Chittagong University of Engineering & Technology, 2013 A Thesis Submitted to the School of Graduate Studies of the University of Lethbridge in Partial Fulfillment of the Requirements for the Degree MASTER OF SCIENCE Department of Mathematics and Computer Science University of Lethbridge LETHBRIDGE, ALBERTA, CANADA c Ashraful Huq Suny, 2016 COLORING AND DEGENERACY FOR DETERMINING VERY LARGE AND SPARSE DERIVATIVE MATRICES ASHRAFUL HUQ SUNY Date of Defence: December 19, 2016 Dr. Shahadat Hossain Supervisor Professor Ph.D. Dr. Daya Gaur Committee Member Professor Ph.D. Dr. Robert Benkoczi Committee Member Associate Professor Ph.D. Dr. Howard Cheng Chair, Thesis Examination Com- Associate Professor Ph.D. mittee Dedication To My Parents. iii Abstract Estimation of large sparse Jacobian matrix is a prerequisite for many scientific and engi- neering problems. It is known that determining the nonzero entries of a sparse matrix can be modeled as a graph coloring problem. To find out the optimal partitioning, we have proposed a new algorithm that combines existing exact and heuristic algorithms. We have introduced degeneracy and maximum k-core for sparse matrices to solve the problem in stages. Our combined approach produce better results in terms of partitioning than DSJM and for some test instances, we report optimal partitioning for the first time. iv Acknowledgments I would like to express my deep acknowledgment and profound sense of gratitude to my supervisor Dr. Shahadat Hossain, for his continuous guidance, support, cooperation, and persistent encouragement throughout the journey of my MSc program. -
Graph Coloring Major Themes Vertex Colorings Χ(G) =
CSC 1300 – Discrete Structures 17: Graph Coloring Major Themes • Vertex coloring • Chromac number χ(G) Graph Coloring • Map coloring • Greedy coloring algorithm • CSC 1300 – Discrete Structures Applicaons Villanova University Villanova CSC 1300 - Dr Papalaskari 1 Villanova CSC 1300 - Dr Papalaskari 2 What is the least number of colors needed for the verFces of Vertex Colorings this graph so that no two adjacent verFces have the same color? Adjacent ver,ces cannot have the same color χ(G) = Chromac number χ(G) = least number of colors needed to color the verFces of a graph so that no two adjacent verFces are assigned the same color? Source: “Discrete Mathemacs” by Chartrand & Zhang, 2011, Waveland Press. Source: “Discrete Mathemacs with Ducks” by Sara-Marie Belcastro, 2012, CRC Press, Fig 13.1. 4 5 Dr Papalaskari 1 CSC 1300 – Discrete Structures 17: Graph Coloring Map Coloring Map Coloring What is the least number of colors needed to color a map? Region è vertex Common border è edge G A D C E B F G H I Villanova CSC 1300 - Dr Papalaskari 8 Villanova CSC 1300 - Dr Papalaskari 9 Coloring the USA Four color theorem Every planar graph is 4-colorable The proof of this theorem is one of the most famous and controversial proofs in mathemacs, because it relies on a computer program. It was first presented in 1976. A more recent reformulaon can be found in this arFcle: Formal Proof – The Four Color Theorem, Georges Gonthier, NoFces of the American Mathemacal Society, December 2008. hp://www.printco.com/pages/State%20Map%20Requirements/USA-colored-12-x-8.gif -
Linearity of Grid Minors in Treewidth with Applications Through Bidimensionality∗
Linearity of Grid Minors in Treewidth with Applications through Bidimensionality∗ Erik D. Demaine† MohammadTaghi Hajiaghayi† Abstract We prove that any H-minor-free graph, for a fixed graph H, of treewidth w has an Ω(w) × Ω(w) grid graph as a minor. Thus grid minors suffice to certify that H-minor-free graphs have large treewidth, up to constant factors. This strong relationship was previously known for the special cases of planar graphs and bounded-genus graphs, and is known not to hold for general graphs. The approach of this paper can be viewed more generally as a framework for extending combinatorial results on planar graphs to hold on H-minor-free graphs for any fixed H. Our result has many combinatorial consequences on bidimensionality theory, parameter-treewidth bounds, separator theorems, and bounded local treewidth; each of these combinatorial results has several algorithmic consequences including subexponential fixed-parameter algorithms and approximation algorithms. 1 Introduction The r × r grid graph1 is the canonical planar graph of treewidth Θ(r). In particular, an important result of Robertson, Seymour, and Thomas [38] is that every planar graph of treewidth w has an Ω(w) × Ω(w) grid graph as a minor. Thus every planar graph of large treewidth has a grid minor certifying that its treewidth is almost as large (up to constant factors). In their Graph Minor Theory, Robertson and Seymour [36] have generalized this result in some sense to any graph excluding a fixed minor: for every graph H and integer r > 0, there is an integer w > 0 such that every H-minor-free graph with treewidth at least w has an r × r grid graph as a minor.