2009 CREW Review
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Unprecedented Parallel Photosynthetic Losses in a Heterotrophic Orchid Genus Craig F
Unprecedented Parallel Photosynthetic Losses in a Heterotrophic Orchid Genus Craig F. Barrett,*,1 Brandon T. Sinn,1 and Aaron H. Kennedy2 1Department of Biology, West Virginia University, Morgantown, WV 2Mycology and Nematology Genetic Diversity and Biology Laboratory, USDA-APHIS, Beltsville, MD *Corresponding author: E-mail: [email protected]. Associate editor: Tal Pupko Abstract Heterotrophic plants are evolutionary experiments in genomic, morphological, and physiological change. Yet, genomic sampling gaps exist among independently derived heterotrophic lineages, leaving unanswered questions about the process of genome modification. Here, we have sequenced complete plastid genomes for all species of the leafless orchid genus Hexalectris, including multiple individuals for most, and leafy relatives Basiphyllaea and Bletia.Ourobjectivesare to determine the number of independent losses of photosynthesis and to test hypotheses on the process of genome degradation as a result of relaxed selection. We demonstrate four to five independent losses of photosynthesis in Hexalectris based on degradation of the photosynthetic apparatus, with all but two species displaying evidence of losses, and variation in gene loss extending below the species level. Degradation in the atp complex is advanced in Hexalectris warnockii, whereas only minimal degradation (i.e., physical loss) has occurred among some “housekeeping” genes. We find genomic rearrangements, shifts in Inverted Repeat boundaries including complete loss in one accession of H. arizonica, and correlations among substitutional and genomic attributes. Our unprecedented finding of multiple, independent transitions to a fully mycoheterotrophic lifestyle in a single genus reveals that the number of such transitions among land plants is likely underestimated. This study underscores the importance of dense taxon sampling, which is highly informative for advancing models of genome evolution in heterotrophs. -
Reversals to Terrestrial Habit in Galeandra Orchids 1
bioRxiv preprint doi: https://doi.org/10.1101/224709; this version posted November 24, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 From tree tops to the ground: reversals to terrestrial habit in Galeandra orchids 2 (Epidendroideae: Catasetinae) 3 4 Authors: Aline C. Martins1*, Thuane Bochorny2, Oscar A. Pérez-Escobar3, Guillaume 5 Chomicki4,5, Silvana H. N. Monteiro6& Eric de Camargo Smidt1 6 7 1. Universidade Federal do Paraná, Setor de Ciências Biológicas, Centro Politécnico, 8 Jardim da Américas, Curitiba - PR, 81531-980. C. P. 19031, Brazil. 9 2. Universidade Estadual de Campinas, Programa de Pós-Graduação em Biologia 10 Vegetal, Campinas - SP, 13083-970. C.P. 6109, Brazil. 11 3. Identification and Naming Department, Royal Botanic Gardens Kew, Richmond, 12 TW9 3AB, UK 13 4. Department of Plant Sciences, University of Oxford, South Park Road, Oxford OX1 14 3RB, UK. 15 5. The Queen’s college, High St, Oxford OX1 4AW, UK. 16 6. Universidade Estadual de Feira de Santana, Programa de Pós-Graduação em 17 Botânica, Departamento de Ciencias Biológicas, BR 116N km 3, 44031-460 Feira de 18 Santana, BA, Brazil 19 20 *Correspondence author: [email protected] 21 22 23 24 1 bioRxiv preprint doi: https://doi.org/10.1101/224709; this version posted November 24, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 25 Abstract 26 27 The colonization of the epiphytic niche of tropical forest canopies played an important 28 role in orchid’s extraordinary diversification in the Neotropics. -
The Systematic Distribution of Vascular Epiphytes: an Update
Selbyana 9: 2-22 THE SYSTEMATIC DISTRIBUTION OF VASCULAR EPIPHYTES: AN UPDATE w. JOHN KREss Marie Selby Botanical Gardens, 811 South Palm Avenue, Sarasota, Florida 33577 ABSTRACT. The list of vascular plant families and genera containing epiphytic species published by Madison (1977) is updated here. Ten percent (23,456 species) of all vascular plant species are epiphytes. Seven percent (876) of the genera, 19 percent (84) of the families, 45 percent (44) of the orders and 75 percent (6) of the classes contain epiphytes. Twenty-three families contain over 50 epiphytic species each. The Orchidaceae is the largest family of epiphytes, containing 440 epiphytic genera and 13,951 epiphytic species. Forty-three genera of vascular plants each contain over 100 epiphytic species. In 1977 Madison published a list of the vas those plants that normally spend their entire life cular plant families and genera that contain epi cycle perched on another plant and receive all phytic species. Madison compiled this list from mineral nutrients from non-terrestrial sources. literature reports, consultation with taxonomic Hemi~epiphytes normally spend only part oftheir specialists, and a survey of herbarium material. life cycle perched on another plant and thus some He reported that 65 families contain 850 genera mineral nutrients are received from terrestrial and 28,200 species of epiphytes. His total ac sources. Hemi-epiphytes either begin their life counted for about ten percent of all species of cycle as epiphytes and eventually send roots and vascular plants. shoots to the ground (primary hemi-epiphytes), Madison's list was the most comprehensive or begin as terrestrially established seedlings that compilation of vascular epiphytes since the works secondarily become epiphytic by severing all of Schimper (1888) and Richards (1952) upon connections with the ground (secondary hemi which it was partly based. -
Bibliografía Botánica Del Caribe I
Consolidated bibliography Introduction To facilitate the search through the bibliographies prepared by T. Zanoni (Bibliographía botánica del Caribe, Bibliografía de la flora y de la vegetatíon de la isla Española, and the Bibliography of Carribean Botany series currently published in the Flora of Greater Antilles Newsletter), the html versions of these files have been put together in a single pdf file. The reader should note the coverage of each bibliography: Hispaniola is exhaustively covered by all three bibliographies (from the origin up to now) while other areas of the Carribean are specifically treated only since 1984. Please note that this pdf document is made from multiple documents, this means that search function is called by SHIFT+CTRL+F (rather than by CTRL+F). Please let me know of any problem. M. Dubé The Jardín Botánico Nacional "Dr. Rafael M. Moscoso," Santo Domingo, Dominican Republic, publishers of the journal Moscosoa, kindly gave permission for the inclusion of these bibliographies on this web site. Please note the present address of T. Zanoni : New York Botanical Garden 200th Street at Southern Blvd. Bronx, NY 10458-5126, USA email: [email protected] Moscosoa 4, 1986, pp. 49-53 BIBLIOGRAFÍA BOTÁNICA DEL CARIBE. 1. Thomas A. Zanoni Zanoni. Thomas A. (Jardín Botánico Nacional, Apartado 21-9, Santo Domingo, República Dominicana). Bibliografía botánica del Caribe. 1. Moscosoa 4: 49-53. 1986. Una bibliografía anotada sobre la literatura botánica publicada en los años de 1984 y 1985. Se incluyen los temas de botánica general y la ecología de las plantas de las islas del Caribe. An annotated bibliography of the botanical literature published in 1984 and 1985, covering all aspects of botany and plant ecology of the plants of the Caribbean Islands. -
Volume 99 Number 2 Pages 129–288 2013 Annals of the Missouri Botanical Garden 139 180 287 ______John Sawyer 231 Colin Clubbe 147 Alan J
Volume 99Number2Pages129–288 Volume 2013 CONTENTS A Global Partnership for Plant Conservation—Supporting the Worldwide Implementation of the Global Strategy for Plant Conservation Report of the Second Conference and General Meeting of the Global Partnership for Plant Conservation ____________________________________________________________________ Peter Wyse Jackson 129 Supporting Target 4 of the Global Strategy for Plant Conservation by Integrating Eco- logical Restoration into the Missouri Botanical Garden’s Conservation Program in Madagascar ___________________________________________________ Chris Birkinshaw, Porter P. Lowry II, _______________________________________________________ Jeannie Raharimampionona & James Aronson 139 Building Capacity for the Achievement of the Global Strategy for Plant Conservation Annals oftheMissouriBotanicalGarden in the Caribbean Region _____________________________________________________________________Colin Clubbe 147 From Checklists to an e-Flora for Southern Africa: Past Experiences and Future Pros- pects for Meeting Target 1 of the 2020 Global Strategy for Plant Conservation_____ ___________________________________________ Neil R. Crouch, Gideon F. Smith & Estrela Figueiredo 153 Achieving Target 8 of the Global Strategy for Plant Conservation: Lessons Learned from the North American Collections Assessment _________________________________________________ ________________________________________________________________________________ Abby Hird & Andrea T. Kramer 161 International Trade in Endangered -
Reversals to Terrestrial Habit in Galeandra Orchids 1
bioRxiv preprint doi: https://doi.org/10.1101/224709; this version posted November 24, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 From tree tops to the ground: reversals to terrestrial habit in Galeandra orchids 2 (Epidendroideae: Catasetinae) 3 4 Authors: Aline C. Martins1*, Thuane Bochorny2, Oscar A. Pérez-Escobar3, Guillaume 5 Chomicki4,5, Silvana H. N. Monteiro6& Eric de Camargo Smidt1 6 7 1. Universidade Federal do Paraná, Setor de Ciências Biológicas, Centro Politécnico, 8 Jardim da Américas, Curitiba - PR, 81531-980. C. P. 19031, Brazil. 9 2. Universidade Estadual de Campinas, Programa de Pós-Graduação em Biologia 10 Vegetal, Campinas - SP, 13083-970. C.P. 6109, Brazil. 11 3. Identification and Naming Department, Royal Botanic Gardens Kew, Richmond, 12 TW9 3AB, UK 13 4. Department of Plant Sciences, University of Oxford, South Park Road, Oxford OX1 14 3RB, UK. 15 5. The Queen’s college, High St, Oxford OX1 4AW, UK. 16 6. Universidade Estadual de Feira de Santana, Programa de Pós-Graduação em 17 Botânica, Departamento de Ciencias Biológicas, BR 116N km 3, 44031-460 Feira de 18 Santana, BA, Brazil 19 20 *Correspondence author: [email protected] 21 22 23 24 1 bioRxiv preprint doi: https://doi.org/10.1101/224709; this version posted November 24, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 25 Abstract 26 27 The colonization of the epiphytic niche of tropical forest canopies played an important 28 role in orchid’s extraordinary diversification in the Neotropics. -
The Quarterly Journal of the Florida Native Plant Society
Volume 24: Number 1 > Fall 2006 PalmettoThe Quarterly Journal of the Florida Native Plant Society Florida’s Endangered and Threatened Plants: Jewels of the Ridge – Silene polypetala – Lilium irridollae Book Review: Wild Orchids of Florida Updated and Expanded Edition By Paul Martin Brown. 2006. University Press of Florida, Gainesville. Softcover (Flexibind). 409 pages. $24.95. Chuck McCartney, a fourth-generation South Florida native, is former editor of the American Orchid Society Bulletin. He is an avid amateur field botanist and wildflower photographer. Brown also has problems giving proper credit to a couple of recent discoveries in South Florida: – On Page 26, under the discussion of Basiphyllaea corallicola, Brown writes: “In 2004 Russ Clusman of Miami discovered a substantial population along a roadside in southern Review by Chuck McCartney Miami.” Although Clusman is now an intrepid Florida orchid explorer and increasingly fine field photographer, that new Dr. Carlyle A. Luer’s 1972 book The Native Orchids of Florida population of this rare orchid was actually discovered by Steve is the gold standard by which other volumes on our native Woodmansee of the Institute for Regional Conservation and the orchid species must be judged. Unfortunately, it’s out of print Dade County Chapter of the Florida Native Plant Society. In and new discoveries and a number of taxonomic changes addition, the population is not in “southern Miami,” but in the have occurred in the intervening 34 years. city of Palmetto Bay, miles to the south of the city of Miami. To fill the void, Paul Martin Brown published Wild Orchids – On Page 214, the credit for the rediscovery of Ponthieva of Florida in 2002. -
[Reading Emblem]
MOLECULAR PHYLOGENETICS OF TRIBE EPIDENDREAE WITH EMPHASIS ON SUBTRIBE LAELIINAE (ORCHIDACEAE) A thesis submitted to the University of Reading for the degree of Doctor of Philosophy by Cássio van den Berg October 2000 Department of Botany, School of Plant Sciences, University of Reading and Jodrell Laboratory, Royal Botanic Gardens, Kew ABSTRACT In this project, the phylogenetic relationships of tribe Epidendreae, especially subtribe Laeliinae were assessed by using DNA sequence data. At the tribal level, I used data from three DNA regions, namely internal transcribed spacers of nuclear ribosomal DNA (ITS), and plastid matK (gene and spacers) and trnL-F (intron, exon and spacer). After individual and combined phylogenetic analysis using parsimony, it was possible to delimit Epidendreae as an exclusively Neotropical tribe (composed of subtribes Laeliinae, Pleurothallidinae, Ponerinae, Bletiinae and Chysinae). It is still unclear whether Coeliinae and Calypsoeae should be also included in Epidendreae. All Old World subtribes placed in Epidendreae in Dressler’s (1993) system belong to different tribes of subfamily Epidendroideae. The revised subtribe Bletiinae is composed only of Bletia, Hexalectris and Basiphyllaea. All Old World genera previously placed in Bletiinae belong also to Old World groups. Arpophyllum (previously Arpophyllinae) and Meiracyllium (previously Meiracyllinae) should be included in Laeliinae. Neocogniauxia and Dilomilis belong to a clade sister to Pleurothallidinae. Ponera, Isochilus and Helleriella (previously in the Scaphyglottis alliance within Laeliinae) belong to a recircumscribed version of Ponerinae, which is sister to Bletiinae. Two other datasets were collected to investigate in more detail phylogenetic relationships within Laeliinae. The first dataset used 295 ITS sequences to assess generic delimitation and species phylogenies. -
Pine Rocklands Are Unique to Southern Florida And
Pine Rocklands ine rocklands are unique to southern Florida and the FNAI Global Rank: G1 Bahamas. In Florida they are found on limestone FNAI State Rank: S1 Psubstrates on the Miami Rock Ridge, in the Florida Federally Listed Species in S. FL: 10 Keys, and in the Big Cypress Swamp. Pine rocklands are dominated by a single canopy tree, South Florida slash pine State Listed Species in S. FL: 103 (Pinus elliottii var. densa), a diverse hardwood and palm Pine rocklands. Original photograph courtesy of U.S. subcanopy, and a very rich herbaceous layer. The flora of pine Fish and Wildlife Service. rocklands is composed of a diverse assemblage of tropical and temperate taxa. Many endemic plant taxa are also found in this community. It is a fire maintained community, requiring periodic fires to eliminate invading hardwoods, assist in nutrient cycling, and to reduce duff layers. Pine rocklands also provide critical foraging and nesting habitat for a diverse array of wildlife, including five federally listed animal species. While significant areas of pine rocklands are now protected within preserves such as Everglades NP, Big Cypress National Preserve, and the National Key Deer Refuge, pine rockland fragments are still threatened on the Miami Rock Ridge and in the Florida Keys. Pine rocklands have been heavily impacted by outright destruction, conversion to agriculture, fire suppression, exotic plant and animal invasions, collecting pressure on plants and animals, and alterations to hydrology. Significant work has now been initiated to control exotic plant taxa in pine rocklands, although much research needs to be conducted on restoring heavily degraded sites. -
Phylogenetic Utility of Ycf1 in Orchids: a Plastid Gene More Variable Than Matk Kurt M
Eastern Illinois University The Keep Faculty Research & Creative Activity Biological Sciences January 2008 Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK Kurt M. Neubig University of Florida, Gainesville W. Mark Whitten University of Florida, Gainesville Barbara S. Carlsward Eastern Illinois University, [email protected] Mario A. Blanco Universidad de Costa Rica, Apdo Lorena Endara University of Florida, Gainesville See next page for additional authors Follow this and additional works at: http://thekeep.eiu.edu/bio_fac Part of the Biology Commons Recommended Citation Neubig, Kurt M.; Whitten, W. Mark; Carlsward, Barbara S.; Blanco, Mario A.; Endara, Lorena; Williams, Norris H.; and Moore, Michael, "Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK" (2008). Faculty Research & Creative Activity. 257. http://thekeep.eiu.edu/bio_fac/257 This Article is brought to you for free and open access by the Biological Sciences at The Keep. It has been accepted for inclusion in Faculty Research & Creative Activity by an authorized administrator of The Keep. For more information, please contact [email protected]. Authors Kurt M. Neubig, W. Mark Whitten, Barbara S. Carlsward, Mario A. Blanco, Lorena Endara, Norris H. Williams, and Michael Moore This article is available at The Keep: http://thekeep.eiu.edu/bio_fac/257 Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK Kurt M. Neubig, W. Mark Whitten, Barbara S. Carlsward, Mario A. Blanco, Lorena Endara, Norris H. Williams, and Michael Moore Abstract Plastid DNA sequences have been widely used by systematists For reconstructing plant phylogenies. The utility oF any DNA region For phylogenetic analysis is determined by ease oF amplification and sequencing, confidence of assessment in phylogenetic character alignment, and by variability across broad taxon sampling. -
Guía De Facilitación Para El Trabajo Con La Literatura De Referencia Para La Flora De Cuba. VERSIÓN III ***
GGGuuuíííaaa dddeee fffaaaccciiillliiitttaaaccciiióóónnn pppaaarrraaa eeelll tttrrraaabbbaaajjjooo cccooonnn lllaaa llliiittteeerrraaatttuuurrraaa dddeee rrreeefffeeerrreeennnccciiiaaa sssooobbbrrreee lllaaa ffflllooorrraaa dddeee CCCuuubbbaaa VVeerrssiióónn IIIIII Julio Pavel García-Lahera 2010 Guía de facilitación para el trabajo con la literatura de referencia sobre la flora de Cuba Versión III Universidad Central “Martha Abreu” de Las Villas Carretera a Camajuaní, Km 5½, Santa Clara, Villa Clara, Cuba Sugerencia de citación: García-Lahera, J.P. 2010. Guía de facilitación para el trabajo con la literatura de referencia sobre la flora de Cuba. Versión III. Editorial Feijóo, Universidad Central de Las Villas, Villa Clara, Cuba. ISBN: 978-959-250-620-6. 158 pp. © Julio Pavel García-Lahera, 2010 Investigador del Jardín Botánico de Sancti Spíritus, Cuba (Centro de Servicios Ambientales; Ministerio de Ciencia, Tecnología y Medio Ambiente). E. mail: [email protected] [Licenciado en Educación, Especialidad Biología (Universidad Pedagógica de Sancti Spíritus - 1997); Maestro en Ciencias, en Botánica, mención: Sistemática de Plantas Superiores (Jardín Botánico Nacional, Universidad de La Habana - 2001); Investigador Agregado (2006); Profesor Auxiliar (2009)]. © Sobre la presente edición: Editorial Feijóo, 2010 ISBN: 978-959-250-620-6 Depósito Legal: 476-2007 Editorial Feijóo Universidad Central “Martha Abreu” de Las Villas Carretera a Camajuaní, Km 5½, Santa Clara, Villa Clara, Cuba Agradecimiento A los siguientes colegas por su amabilidad al poner a mi disposición material bibliográfico necesario y/o actualizado: M. Sc. Reina Hechevarría Cruz, Dr. C. Pedro Herrera Oliver, Dr. C. Víctor Fuentes Fiallo, Dr. C. Carlos Sánchez Villaverde y Dr. C. Luis Catasús Guerra. A Yenisbel Hernández González por su colaboración en la revisión inicial de los textos de la “Flora de Cuba” para la conformación de los índices, y en la obtención de información desde la Internet. -
1273286880.Pdf
Signature Project Updates CREW ReView In Loving Memory of Emi Suddenly Awash in Fishing Cats mi, the Sumatran rhino that made history by pro- n 2003, Thai field ecologist Passanan (Namfon) Cutter be- ducing three calves at the Cincinnati Zoo gan searching diligently for any evidence of fishing cats fromE 2001-2008, passed away in her sleep on (IPrionailurus viverrinus) in the last remaining wetland areas Sept. 5, 2009. No animal at the zoo was more of Thailand. A mere four years later, she finally obtained her beloved than this amazing rhino who contributed first camera trap photograph of a wild fishing cat. Not a ter- more to saving her species than any other Su- ribly auspicious beginning for this aspiring Master’s degree matran rhino in the world. Because Emi was so student at the University of Minnesota but, more ominously, docile and amiable, CREW scientists were able also a likely reflection of the increasing scarcity of this aquatic to study her in depth and unravel the mysteries cat species in the wild. In early 2009, Namfon expanded her of Sumatran rhino reproduction which led to our field survey to Sam Roi Yot National Park using 10 new cam- successful breeding program…the only one in era traps provided by CREW. Over a four month period, she the world. Although she left us too early, Emi’s obtained photographs of 15 individual fishing cats at this new legacy lives on in her three beautiful healthy site and, with assistance of several Thai veterinarians, captured calves. Emi’s first born, Andalas, was returned Fishing cat kittens at the Cincinnati Zoo.