Phenotypic and Phylogenetic Studies of Benthic Mat-Forming Cyanobacteria on the NW Svalbard
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Botswana), a Subtropical Flood-Pulsed Wetland
Biodiversity and Biomass of Algae in the Okavango Delta (Botswana), a Subtropical Flood-Pulsed Wetland Thesis submitted for the degree of Doctor of Philosophy by LUCA MARAZZI University College London Department of Geography University College London December 2014 I, LUCA MARAZZI, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. LUCA MARAZZI 2 ABSTRACT In freshwater bodies algae provide key ecosystem services such as food and water purification. This is the first systematic assessment of biodiversity, biomass and distribution patterns of these aquatic primary producers in the Okavango Delta (Botswana), a subtropical flood-pulsed wetland in semiarid Southern Africa. This study delivers the first estimate of algal species and genera richness at the Delta scale; 496 species and 173 genera were observed in 132 samples. A new variety of desmid (Chlorophyta) was discovered, Cosmarium pseudosulcatum var. okavangicum, and species richness estimators suggest that a further few hundred unidentified species likely live in this wetland. Rare species represent 81% of species richness and 30% of total algal biovolume. Species composition is most similar within habitat types, thus varying more significantly at the Delta scale. In seasonally inundated floodplains, algal species / genera richness and diversity are significantly higher than in permanently flooded open water habitats. The annual flood pulse has historically allowed more diverse algal communities to develop and persist in these shallower and warmer environments with higher mean nutrient levels and more substrata and more heterogenous habitats for benthic taxa. These results support the Intermediate Disturbance Hypothesis, Species-Energy Theory and Habitat Heterogeneity Diversity hypotheses. -
(Cyanobacterial Genera) 2014, Using a Polyphasic Approach
Preslia 86: 295–335, 2014 295 Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach Taxonomické hodnocení cyanoprokaryot (cyanobakteriální rody) v roce 2014 podle polyfázického přístupu Jiří K o m á r e k1,2,JanKaštovský2, Jan M a r e š1,2 & Jeffrey R. J o h a n s e n2,3 1Institute of Botany, Academy of Sciences of the Czech Republic, Dukelská 135, CZ-37982 Třeboň, Czech Republic, e-mail: [email protected]; 2Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, CZ-370 05 České Budějovice, Czech Republic; 3Department of Biology, John Carroll University, University Heights, Cleveland, OH 44118, USA Komárek J., Kaštovský J., Mareš J. & Johansen J. R. (2014): Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach. – Preslia 86: 295–335. The whole classification of cyanobacteria (species, genera, families, orders) has undergone exten- sive restructuring and revision in recent years with the advent of phylogenetic analyses based on molecular sequence data. Several recent revisionary and monographic works initiated a revision and it is anticipated there will be further changes in the future. However, with the completion of the monographic series on the Cyanobacteria in Süsswasserflora von Mitteleuropa, and the recent flurry of taxonomic papers describing new genera, it seems expedient that a summary of the modern taxonomic system for cyanobacteria should be published. In this review, we present the status of all currently used families of cyanobacteria, review the results of molecular taxonomic studies, descriptions and characteristics of new orders and new families and the elevation of a few subfamilies to family level. -
Journal of Threatened Taxa
PLATINUM The Journal of Threatened Taxa (JoTT) is dedicated to building evidence for conservaton globally by publishing peer-reviewed artcles OPEN ACCESS online every month at a reasonably rapid rate at www.threatenedtaxa.org. All artcles published in JoTT are registered under Creatve Commons Atributon 4.0 Internatonal License unless otherwise mentoned. JoTT allows unrestricted use, reproducton, and distributon of artcles in any medium by providing adequate credit to the author(s) and the source of publicaton. Journal of Threatened Taxa Building evidence for conservaton globally www.threatenedtaxa.org ISSN 0974-7907 (Online) | ISSN 0974-7893 (Print) Communication Chroococcalean blue green algae from the paddy fields of Satara District, Maharashtra, India Sharada Jagannath Ghadage & Vaneeta Chandrashekhar Karande 26 October 2020 | Vol. 12 | No. 14 | Pages: 16979–16992 DOI: 10.11609/jot.5683.12.14.16979-16992 For Focus, Scope, Aims, Policies, and Guidelines visit htps://threatenedtaxa.org/index.php/JoTT/about/editorialPolicies#custom-0 For Artcle Submission Guidelines, visit htps://threatenedtaxa.org/index.php/JoTT/about/submissions#onlineSubmissions For Policies against Scientfc Misconduct, visit htps://threatenedtaxa.org/index.php/JoTT/about/editorialPolicies#custom-2 For reprints, contact <[email protected]> The opinions expressed by the authors do not refect the views of the Journal of Threatened Taxa, Wildlife Informaton Liaison Development Society, Zoo Outreach Organizaton, or any of the partners. The journal, the publisher, -
Cryptic Diversity of Cyanobacteria
CRYPTIC DIVERSITY OF CYANOBACTERIA DOCTORAL THESIS FOR A DOCTORAL DEGREE Department of Botany Faculty of Science, Palacký University Olomouc Author MGR. EVA JAHODÁŘOVÁ Supervisor DOC. RNDR. PETR HAŠLER, PH.D. Olomouc 2019 © Eva Jahodářová, Palacký University Olomouc, 2019 You can't even begin to understand biology, you can't understand life, unless you understand what it's all there for, how it arose-and that means evolution. Richard Dawkins ACKNOWLEDGMENTS I owe many thanks to colleagues, advisors, friends, and family: PETR HAŠLER, PETR DVOŘÁK and ALOISIE POULÍČKOVÁ for accepting me into Algological laboratory and taking care of me during my study. I would also like to express my greeting for the opportunity to undertake my doctoral studies with their advice, feedback, inspiration, support, guidance, and total assistance. MATĚJ BOČEK, MARKÉTA LETÁKOVÁ, LUCIE KOBRLOVÁ, MICHAL HRONEŠ, JANA RŮŽIČKOVÁ, MICHAELA ŠVÉCAROVÁ, IVETA HRADILOVÁ, and other members of the botanical and zoological department for their help, advice and support. Foundation NADÁNÍ JOSEFA, MARIE A ZDEŇKY HLÁVKOVÝCH for its financial support during my internship in the Natural History Museum, London. My dear family and my boyfriend MICHAL MOTYKA for everything! DECLARATION I declare that this Ph.D. thesis has been written solely by myself. All the sources quoted in this work are listed in the Reference section. All published results included in this thesis have been approved with the help of mentioned co-authors. In Olomouc 15.5.2019 Mgr. Eva Jahodářová ABSTRACT Cyanobacteria emerged on Earth approximately 3.5 billion years ago. They are the major contributor to global biogeochemical cycles and are ancestors of today's chloroplast of higher plants. -
Observation on Species Diversity of Chroococcaceae of Lakes of North Maharashtra, India
European Journal of Biological Sciences 7 (4): 197-202, 2015 ISSN 2079-2085 © IDOSI Publications, 2015 DOI: 10.5829/idosi.ejbs.2015.7.04.1109 Observation on Species Diversity of Chroococcaceae of Lakes of North Maharashtra, India S.R. Mahajan Department of Botany Bhusawal Arts, Science and P.O. Nahata Commerce College, Bhusawal. 425201 Dist-Jalgaon, (M.S), India Abstract: To study the taxonomy and diversity of chroococcaceae, a monthly visits and sample collections were made from lentic water bodies and its adjoining fields at Hartala and Velhala villages in Jalgaon district of North Maharashtra, during June 2012 to May 2014. About 30 taxa under 6 genera (viz Microcystis, Chroococcus, Gloeocapsa, Aphanocapsa, Aphanothece, Synechocystis) Microcystis aeruginosa Kuetz., M. floxe-aquae Kerchener, M. marginata Kuetz., M. robusta Nygard, M. viridis (A.Br.) Lemm. Chroococcus coharens (Breb. Nag.) C. hansgirgi Schmidle. C. minimus (Keissler ) Lamm., C. minutus (Kuetz.) Nag., C. montanus Hansgirg, C. varius A.Br., Gloeocapsa calcarea Tilden, G. kuetzingiana Nag., G. crepidium Thuret., G. punctata Nag., G. stegophila (Itzings.) Rabenh.v.crassa Rao, C.B., G. rupestris ( Lyngb.) Bornet v. maxima West., G. samoensis Wille, Aphanocapsa banaresensis Bharadwaja, A. Crassa Ghose, A. grevilleri ( Mass.) Rabenh., A. koordersi Strom., A. montana Cramer., A. roseana De Bary., A. castagenei (Breb.) Rabenh., A. pallida (Kuetz.) Rabenh., Synechocystis aquatilis Nag., S. aquatilis Sauv., S. pevalekii Ercegovic., were observed in details. The author also observed the occerrence of different taxa in different seasons which reflected the ecological nature of the members of Chroococcaceae. It has been observed that January is the most suaitable month for the occurrence of Chroococcaceae. -
Aerophytic Cyanoprokaryotes from the Atlantic Rainforest Region of São Paulo State, Brazil: Chroococcales and Oscillatoriales
Cryptogamie,Algol., 2009, 30 (1): 135-152 © 2009 Adac. Tous droits réservés Aerophytic cyanoprokaryotes from the Atlantic rainforest region of São Paulo State,Brazil: Chroococcales and Oscillatoriales Luis Henrique Z.BRANCOa*,Lucien HOFFMANNb ,Joana PozzettiTEIXEIRAa , Viviani FERREIRAa &José Cesar de MORAIS FILHOa a UNESP – São Paulo State University, IBILCE, Department of Zoology and Botany,R. Cristóvão Colombo, 2265, BR-15054000, São José do Rio Preto, SP, Brazil b Public Research Centre – Gabriel Lippmann,Environment and Biotechnologies Research Unit, 41,Rue du Brill,L-4422,Belvaux,Grand-duchy of Luxembourg (Received 16 April 2008, accepted 15 January 2009) Abstract – Because algae are primarily aquatic, it seems almost paradoxical that there should exist a relatively diversified soil flora where aerophytic cyanoprokaryotes are especially abundant. However, there appear to be relatively few studies on this topic. This paper aims to improve the taxonomic knowledge on the chroococcalean and oscillatorialean cyanoprokaryote flora in tropical regions. Samples of cyanoprokaryotes were collected in the rainforest region of the São Paulo State,Brazil. Data on cyanoprokaryote mass type and color, substratum type, air and mass temperature and humidity, pH and absolute and relative irradiance were collected. The study revealed the presence of 24 species belonging to the orders Chroococcales and Oscillatoriales (12 species each). Aphanothece (four species) was the most species-rich genus. Overall, taxonomic resolution at the species level based on morphological and morphometric data can still be problematic. Aerophytic algae / Brazil / Chroococcales / Cyanobacteria / Cyanoprokaryota / Oscillatoriales / taxonomy / tropical rainforest Résumé – Cyanoprokaryotes aérophiles des forêts ombrophiles atlantiques de l’état de São Paulo,Brésil :Chroococcales et Oscillatoriales. -
Screening of Marine Microalgae
Screening of marine microalgae: Investigation of new exopolysaccharide producers Clément Gaignard, Céline Laroche, Guillaume Pierre, Pascal Dubessay, Cédric Delattre, Christine Gardarin, Priscilla Gourvil, Ian Probert, Aurore Dubuffet, Philippe Michaud To cite this version: Clément Gaignard, Céline Laroche, Guillaume Pierre, Pascal Dubessay, Cédric Delattre, et al.. Screen- ing of marine microalgae: Investigation of new exopolysaccharide producers. Algal Research - Biomass, Biofuels and Bioproducts, Elsevier, 2019, 44, pp.101711. 10.1016/j.algal.2019.101711. hal-02364692 HAL Id: hal-02364692 https://hal.archives-ouvertes.fr/hal-02364692 Submitted on 18 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 Screening of marine microalgae: investigation of new 2 exopolysaccharide producers 3 4 C. Gaignard1, C. Laroche1, G. Pierre1, P. Dubessay1, C. Delattre1, C. 5 Gardarin1, P. Gourvil2, I. Probert2, A. Dubuffet3, P. Michaud1* 6 7 1Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000 CLERMONT-FERRAND, 8 France. 9 2Station -
Bahia, Brasil)
UNIVERSIDADE FEDERAL DO RIO DE JANEIRO INSTITUTO DE BIOLOGIA PROGRAMA DE PÓS-GRADUAÇÃO EM BIODIVERSIDADE E BIOLOGIA EVOLUTIVA - PPGBBE TESE DE DOUTORADO Genômica estrutural e funcional de turfs e cianobactérias do Banco de Abrolhos (Bahia, Brasil) JULINE MARTA WALTER Rio de Janeiro 2016 Genômica estrutural e funcional de turfs e cianobactérias do Banco de Abrolhos (Bahia, Brasil) JULINE MARTA WALTER Tese apresentada como requerimento parcial ao título de Doutor pelo Programa de Pós Graduação em Biodiversidade e Biologia Evolutiva da Universidade Federal do Rio de Janeiro. Aprovada em: 19 de dezembro de 2016. Prof. Dr. Fabiano Lopes Thompson __________________________ Profª. Drª. Sigrid Neumann Leitão __________________________ Prof. Dr. Ronaldo Bastos Francini-Filho __________________________ Prof. Dr. Carlos Eduardo Guerra Scharago __________________________ Prof. Dr. Osmindo Rodrigues Pires Júnior __________________________ Profª. Drª. Laura Silvia Bahiense da Silva __________________________ Leite Rio de Janeiro 2016 iii Structural and functional genomics of turfs and cyanobacteria from the Abrolhos Bank (Bahia, Brazil) JULINE MARTA WALTER Thesis submitted in partial fulfillment of the requirements for the degree of Doctor in the Graduate Program of Biodiversity and Evolutionary Biology at Federal University of Rio de Janeiro. Adviser: Prof. Dr. Fabiano Lopes Thompson Doctoral Committee: Prof. Dr. Ronaldo Bastos Francini-Filho (UFPB) Prof. Drª. Sigrid Neumann Leitão (UFPE) Prof. Dr. Osmindo Rodrigues Pires Júnior (UnB) Prof. Dr. Carlos Eduardo Guerra Schrago (UFRJ) Prof. Drª. Laura Silvia Bahiense da Silva Leite (COPPE, UFRJ) Alternate Members: Profª. Drª. Cristiane Carneiro Thompson (UFRJ) Profª. Drª. Michelle Regina Lemos Klautau (UFRJ) Rio de Janeiro 2016 iv This thesis is dedicated to my parents v ACKNOWLEDGMENTS I want to thank the many people who contributed with this thesis, particularly my adviser Dr. -
Toxic Or Otherwise Harmful Algae and the Built Environment
toxins Review Toxic or Otherwise Harmful Algae and the Built Environment Wolfgang Karl Hofbauer Umwelt, Hygiene und Sensorik, Fraunhofer-Institut für Bauphysik, 83626 Valley, Bavaria, Germany; [email protected] Abstract: This article gives a comprehensive overview on potentially harmful algae occurring in the built environment. Man-made structures provide diverse habitats where algae can grow, mainly aerophytic in nature. Literature reveals that algae that is potentially harmful to humans do occur in the anthropogenic environment in the air, on surfaces or in water bodies. Algae may negatively affect humans in different ways: they may be toxic, allergenic and pathogenic to humans or attack human structures. Toxin-producing alga are represented in the built environment mainly by blue green algae (Cyanoprokaryota). In special occasions, other toxic algae may also be involved. Green algae (Chlorophyta) found airborne or growing on manmade surfaces may be allergenic whereas Cyanoprokaryota and other forms may not only be toxic but also allergenic. Pathogenicity is found only in a special group of algae, especially in the genus Prototheca. In addition, rare cases with infections due to algae with green chloroplasts are reported. Algal action may be involved in the biodeterioration of buildings and works of art, which is still discussed controversially. Whereas in many cases the disfigurement of surfaces and even the corrosion of materials is encountered, in other cases a protective effect on the materials is reported. A comprehensive list of 79 taxa of potentially harmful, airborne algae supplemented with their counterparts occurring in the built environment, is given. Due to global climate change, it is not unlikely that the built environment will suffer from more and higher amounts of harmful algal species in the future. -
Phenotypic and Ecological Diversity of Freshwater Coccoid Cyanobacteria from Maritime Antarctica and Islands of NW Weddell Sea
CZECH POLAR REPORTS 4 (1): 17-39, 2014 Phenotypic and ecological diversity of freshwater coccoid cyanobacteria from maritime Antarctica and Islands of NW Weddell Sea. II. Jiří Komárek Institute of Botany AS CR, Třeboň, and Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic Abstract The article contains the second part of the review of natural populations of coccoid (unicellular, colonial) cyanobacteria from the coastal, maritime Antarctica and the vicinity of Antarctic Peninsula, mainly from its north-eastern region. The samples were collected from several localities with terrestrial and freshwater habitats of the deglaciated parts of South Shetland Islands, and from the northern part of James Ross Island. The material was identified according to the modern system (Komárek et al. 2014b). This second part contains 16 species (from 12 genera) from the cytologically more complicated orders Chroococcales, Pleurocapsales and Chroococcidiopsidales, characterized also by more irregular thylakoidal system. Similarly as in types from the order Synechococcales, all species are connected with special habitats and their cultivation is difficult. They are adapted to the special biotopes and in spite of their relatively wide diversity, only few occurred rarely in massive populations. Several species are evidently endemic for Antarctica, 8 species are described as new recognized taxa. Key words: coastal Antarctica, coccoid cyanobacteria, complicated thylakoidal system, South Shetland Islands, James Ross Island, taxonomy, ecology Abbreviations: D - description of morphology, E - ecology, L - locality, N - notes, JRI - James Ross Island, KGI - King George Island DOI: 10.5817/CPR2014-1-3 ——— Received March 17, 2014, accepted July 28, 2014. *Corresponding author: Jiří Komárek <[email protected]> Acknowledgement: The study was supported by grants GA CR 206/08/0318 and RVO67985939. -
Cyanobacteria in Hypersaline Environments: Biodiversity and Physiological Properties
Biodivers Conserv (2015) 24:781–798 DOI 10.1007/s10531-015-0882-z REVIEW PAPER Cyanobacteria in hypersaline environments: biodiversity and physiological properties Aharon Oren Received: 7 July 2014 / Revised: 3 February 2015 / Accepted: 12 February 2015 / Published online: 3 March 2015 Ó Springer Science+Business Media Dordrecht 2015 Abstract Within the cyanobacterial world there are many species adapted to life in hypersaline environments. Some can even grow at salt concentrations approaching NaCl saturation. Halophilic cyanobacteria often form dense mats in salt lakes, and on the bottom of solar saltern ponds, hypersaline lagoons, and saline sulfur springs, and they may be found in evaporite crusts of gypsum and halite. A wide range of species were reported to live at high salinities. These include unicellular types (Aphanothece halophytica and similar morphotypes described as Euhalothece and Halothece), as well as non-hetero- cystous filamentous species (Coleofasciculus chthonoplastes, species of Phormidium, Halospirulina tapeticola, Halomicronema excentricum, and others). Cyanobacterial di- versity in high-salt environments has been explored using both classic, morphology-based taxonomy and molecular, small subunit rRNA sequence-based techniques. This paper reviews the diversity of the cyanobacterial communities in hypersaline environments worldwide, as well as the physiological adaptations that enable these cyanobacteria to grow at high salt concentrations. To withstand the high osmotic pressure of their surrounding medium, halophilic -
Cyanobacteria in the Cryosphere: Snow, Ice and Extreme Cold 1 4
Cyanobacteria in the Cryosphere: Snow, Ice and Extreme Cold 1 4 Antonio Quesada and Warwick F. Vincent Contents Summary Summary ...................................................................................... 387 This chapter explores the occurrence and dominance of 14.1 Introduction ................................................................... 387 cyanobacteria in some of the harshest environments on earth, 14.2 Polar Desert Ecosystems ............................................... 388 the cryosphere, where extreme cold and the near absence of 14.2.1 Lithic Environment ......................................................... 388 liquid water provide severe constraints on growth and sur- 14.2.2 Striped Ground and Polygonal Patterns .......................... 392 14.2.3 Soils ................................................................................. 392 vival. They are present in ice-based ecosystems including snow, glacier ice, lake ice and ice-shelves, and sometimes 14.3 Ice-Based Ecosystems ................................................... 393 14.3.1 Snow and Lake Ice .......................................................... 393 achieve remarkably high biomass concentrations. Cold des- 14.3.2 Glacial Ice and Cryoconite Ecosystems .......................... 394 ert ecosystems in the Arctic and Antarctica also contain a 14.3.3 Ice Shelves ...................................................................... 394 variety of habitats colonized by cyanobacteria, although their 14.4 Cyanobacterial Diversity in the