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Antiviral Chemistry & Chemotherapy's Current Antiviral Agents Factfile 2006
RNA_title_sheet 22/8/06 10:13 Page 1 Antiviral Chemistry & Chemotherapy’s current antiviral agents FactFile 2006 (1st edition) The RNA viruses RNA_title_sheet 22/8/06 10:13 Page 2 RNA 22/8/06 09:31 Page 129 Antiviral Chemistry & Chemotherapy 17.3 FactFiille:: RNA viiruses Symmetrel, Mantadix Amantadine Adamantan-1-amine hydrochloride, l-adamantanamine, aman- tadine hydrochloride. Novartis References: 1,64,65 Principal target virus: Influenza A virus. Other activities: HCV. H Mode of action: M2 ion channel inhibitor. Clinical stage: Licensed. Adamantine (cyclic primary amine) derivative used for the treatment and prophylaxis of influenza A virus infections. Rapid emergence of resistence has limited it use. Sometimes used to treat HCV infection in combination with interferon and ribavirin. NH2.HCI H H Ciluprevir (1S,4R,6S,14S,18R)-7Z-14-Cyclopentyloxycarbonylamino-18-[2-(2- isopropylamino-thiazol-4-yl)-7-methoxy-quinolin-4-yloxy]-2,15 Boehringer Ingelheim (Canada) Ltd. R&D dioxo-3,16-diazatricyclo[14.3.0.04,6]nonadec-7-ene-4-carboxylic acid, BILN 2061. References: 66,67,68,69 OMe Principal target virus: HCV Mode of action: PI Development of ciluprevir has been discontinued. Ciluprevir is a novel small molecule anti-hepatitis C compound. It is N the first in a new class of investigational antiviral drugs, HCV PIs. N H O N CH S 3 O H C H 3 O N N OH O O N O H Tamiflu Oseltamivir Ethyl ester of (3R,4R,5S)-4-acetamido-5-amino-3-(1-ethyl- propoxy)-1-cyclohexane-1-carboxylic acid, GS4104, Ro-64-0796. -
Novel HCV Inhibitors
The UseNovel of Antivirals HCV toInhibitors Rapidly Contain Outbreaks of the Classical Swine Fever Virus Johan Neyts Rega Institute, KULeuven, Leuven Belgium Presented at the 9th Eu. Workshop on HIV & Hepatitis – 25 – 27 March 2011, Paphos, Cyprus Selective Inhibitors of HCV Replication that Target NS Proteins Presented at the 9th Eu. Workshop on HIV & Hepatitis – 25 – 27 March 2011, Paphos, Cyprus The NS2 cysteine protease NS2/3 cleavage is essential for replication and assembly N N C C Active Site 1 Active Site 2 Lorenz et al. Nature (2006) 442: 831-5 Presented at the 9th Eu. Workshop on HIV & Hepatitis – 25 – 27 March 2011, Paphos, Cyprus The HCV NS3 serine protease N-terminal domain : a serine protease in the presence of the NS4A cofactor protein C-terminal domain : RNA helicase De Francesco et al. 2001 Presented at the 9th Eu. Workshop on HIV & Hepatitis – 25 – 27 March 2011, Paphos, Cyprus NS3 protease product based inhibitors carboxy-terminal hexapeptide products as an active-site affinity anchor BILN-2061 Presented at the 9th Eu. Workshop on HIV & Hepatitis – 25 – 27 March 2011, Paphos, Cyprus Proof of concept with BILN-2061 (Ciluprevir) Lamarre et al., Nature. (2003) 426:186-9. Presented at the 9th Eu. Workshop on HIV & Hepatitis – 25 – 27 March 2011, Paphos, Cyprus Telaprevir monotherapy placebo 1250 mg q12h 450 mg q8h 750 mg q8h Reesink et al., Hepatology (2005) 42 : 234A Presented at the 9th Eu. Workshop on HIV & Hepatitis – 25 – 27 March 2011, Paphos, Cyprus The Major VX-950 and BILN2061 Resistance Mutations Do Not Cause Cross-resistance ITMN-191 Ciluprevir Lin, C. -
Design and Synthesis of Hepatitis C Virus NS3 Protease Inhibitors
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Pharmacy 197 Design and Synthesis of Hepatitis C Virus NS3 Protease Inhibitors Targeting Different Genotypes and Drug-Resistant Variants ANNA KARIN BELFRAGE ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6192 ISBN 978-91-554-9166-6 UPPSALA urn:nbn:se:uu:diva-243317 2015 Dissertation presented at Uppsala University to be publicly examined in B41 BMC, Husargatan 3, Uppsala, Friday, 27 March 2015 at 09:15 for the degree of Doctor of Philosophy (Faculty of Pharmacy). The examination will be conducted in Swedish. Faculty examiner: Ulf Ellervik (Lunds tekniska högskola). Abstract Belfrage, A. K. 2015. Design and Synthesis of Hepatitis C Virus NS3 Protease Inhibitors. Targeting Different Genotypes and Drug-Resistant Variants. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Pharmacy 197. 108 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-554-9166-6. Since the first approved hepatitis C virus (HCV) NS3 protease inhibitors in 2011, numerous direct acting antivirals (DAAs) have reached late stages of clinical trials. Today, several combination therapies, based on different DAAs, with or without the need of pegylated interferon-α injection, are available for chronic HCV infections. The chemical foundation of the approved and late-stage HCV NS3 protease inhibitors is markedly similar. This could partly explain the cross-resistance that have emerged under the pressure of NS3 protease inhibitors. The first-generation NS3 protease inhibitors were developed to efficiently inhibit genotype 1 of the virus and were less potent against other genotypes. The main focus in this thesis was to design and synthesize a new class of 2(1H)-pyrazinone based HCV NS3 protease inhibitors, structurally dissimilar to the inhibitors evaluated in clinical trials or approved, potentially with a unique resistance profile and with a broad genotypic coverage. -
Reviews in Basic and Clinical Gastroenterology
GASTROENTEROLOGY 2010;138:447–462 REVIEWS IN BASIC AND CLINICAL GASTROENTEROLOGY REVIEWS IN BASIC AND CLINICAL John P. Lynch and David C. Metz, Section Editors GASTROENTEROLOGY Resistance to Direct Antiviral Agents in Patients With Hepatitis C Virus Infection CHRISTOPH SARRAZIN and STEFAN ZEUZEM J. W. Goethe-University Hospital, Medizinische Klinik 1, Frankfurt am Main, Germany Chronic hepatitis C virus (HCV) infection is one of agents that are also named specific, targeted antiviral the major causes of cirrhosis, hepatocellular carci- therapies (STAT-C) for HCV infection are in phase 1–3 noma, and liver failure that leads to transplantation. trials. We review resistance to DAA agents, focusing on The current standard treatment, a combination of compounds in development such as reagents that target pegylated interferon alfa and ribavirin, eradicates the the HCV nonstructural (NS)3 protease, the NS5A pro- virus in only about 50% of patients. Directly acting tein, and the RNA-dependent RNA polymerase NS5B. We antiviral (DAA) agents, which inhibit HCV replica- also discuss indirect inhibitors or compounds that in- tion, are in phase 1, 2, and 3 trials; these include hibit HCV replication by not yet completely resolved reagents that target the nonstructural (NS)3 protease, mechanisms, such as cyclophilin inhibitors, nitazox- the NS5A protein, the RNA-dependent RNA-polymer- anide, and silibinin (Table 1, Figure 1). ase NS5B, as well as compounds that directly inhibit HCV replication through interaction with host cell Parameters That Affect Resistance proteins. Because of the high genetic heterogeneity of Heterogeneity of HCV HCV and its rapid replication, monotherapy with HCV has a high rate of turnover; its half-life was DAA agents poses a high risk for selection of resistant estimated to be only 2–5 hours, with the production and variants. -
Targets for Antiviral Therapy of Hepatitis C
9 Targets for Antiviral Therapy of Hepatitis C Daniel Rupp, MD1,2 Ralf Bartenschlager, PhD1,2 1 Department for Infectious Diseases, Molecular Virology, University of Address for correspondence Ralf Bartenschlager, PhD, Department Heidelberg, Heidelberg, Germany for Infectious Diseases, Molecular Virology, University of Heidelberg, 2 German Centre for Infection Research, Heidelberg University Im Neuenheimer Feld 345, 69120 Heidelberg, Germany (e-mail: [email protected]). Semin Liver Dis 2014;34:9–21. Abstract Presently, interferon- (IFN-) containing treatment regimens are the standard of care for patients with hepatitis C virus (HCV) infections. Although this therapy eliminates the virus in a substantial proportion of patients, it has numerous side effects and contra- indications. Recent approval of telaprevir and boceprevir, targeting the protease residing in nonstructural protein 3 (NS3) of the HCV genome, increased therapy success when given in combination with pegylated IFN and ribavirin, but side effects are more frequent and the management of treatment is complex. This situation will change soon with the introduction of new highly potent direct-acting antivirals. They target, in Keywords addition to the NS3 protease, NS5A, which is required for RNA replication and virion ► NS3 protease assembly and the NS5B RNA-dependent RNA polymerase. Moreover, host-cell factors ► NS5A such as cyclophilin A or microRNA-122, essential for HCV replication, have been pursued ► NS5B as therapeutic targets. In this review, the authors briefly summarize the main features of ► miR-122 viral and cellular factors involved in HCV replication that are utilized as therapy targets ► cyclophilin A for chronic hepatitis C. Hepatitis C virus (HCV) infection still is a major health burden nonstructural protein 3 (NS3): boceprevir (BOC) and telap- affecting 130 to 170 million people worldwide. -
Mechanisms of Substrate Recognition by HCV NS3/4A Protease Provide Insights Into Drug Resistance: a Dissertation
University of Massachusetts Medical School eScholarship@UMMS GSBS Dissertations and Theses Graduate School of Biomedical Sciences 2011-05-31 Mechanisms of Substrate Recognition by HCV NS3/4A Protease Provide Insights Into Drug Resistance: A Dissertation Keith P. Romano University of Massachusetts Medical School Let us know how access to this document benefits ou.y Follow this and additional works at: https://escholarship.umassmed.edu/gsbs_diss Part of the Amino Acids, Peptides, and Proteins Commons, Biochemistry, Biophysics, and Structural Biology Commons, Chemical Actions and Uses Commons, Digestive System Diseases Commons, Pharmaceutical Preparations Commons, Therapeutics Commons, Virology Commons, Virus Diseases Commons, and the Viruses Commons Repository Citation Romano KP. (2011). Mechanisms of Substrate Recognition by HCV NS3/4A Protease Provide Insights Into Drug Resistance: A Dissertation. GSBS Dissertations and Theses. https://doi.org/10.13028/2bmp-kp97. Retrieved from https://escholarship.umassmed.edu/gsbs_diss/554 This material is brought to you by eScholarship@UMMS. It has been accepted for inclusion in GSBS Dissertations and Theses by an authorized administrator of eScholarship@UMMS. For more information, please contact [email protected]. MECHANISMS OF SUBSTRATE RECOGNITION BY HCV NS3/4A PROTEASE PROVIDE INSIGHTS INTO DRUG RESISTANCE A Dissertation Presented By Keith Patrick Romano Submitted to the Faculty of the University of Massachusetts Graduate School of Biomedical Sciences, Worcester In partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 31, 2011 Biochemistry and Molecular Pharmacology MECHANISMS OF SUBSTRATE RECOGNITION BY HCV NS3/4A PROTEASE PROVIDE INSIGHTS INTO DRUG RESISTANCE A Dissertation Presented By Keith Patrick Romano The signatures of the Dissertation Defense Committee signify completion and approval as to style and content of the Dissertation. -
Targeting Drug Resistance in HCV NS3/4A Protease: Mechanisms and Inhibitor Design Strategies
University of Massachusetts Medical School eScholarship@UMMS GSBS Dissertations and Theses Graduate School of Biomedical Sciences 2018-04-10 Targeting Drug Resistance In HCV NS3/4A Protease: Mechanisms And Inhibitor Design Strategies Ashley N. Matthew University of Massachusetts Medical School Let us know how access to this document benefits ou.y Follow this and additional works at: https://escholarship.umassmed.edu/gsbs_diss Part of the Biochemistry Commons, Biophysics Commons, and the Structural Biology Commons Repository Citation Matthew AN. (2018). Targeting Drug Resistance In HCV NS3/4A Protease: Mechanisms And Inhibitor Design Strategies. GSBS Dissertations and Theses. https://doi.org/10.13028/M23X3H. Retrieved from https://escholarship.umassmed.edu/gsbs_diss/969 This material is brought to you by eScholarship@UMMS. It has been accepted for inclusion in GSBS Dissertations and Theses by an authorized administrator of eScholarship@UMMS. For more information, please contact [email protected]. TARGETING DRUG RESISTANCE IN HCV NS3/4A PROTEASE: MECHANISMS AND INHIBITOR DESIGN STRATEGIES A Dissertation Presented By ASHLEY NICOLE MATTHEW Submitted to the Faculty of the University of Massachusetts Graduate School of Biomedical Sciences, Worcester in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY APRIL 10th, 2018 MD/PHD PROGRAM ii TARGETING DRUG RESISTANCE IN HCV NS3/4A PROTEASE: MECHANISMS AND INHIBITOR DESIGN STRATEGIES A Dissertation Presented By ASHLEY NICOLE MATTHEW This work was undertaken in the -
Proprotein Convertases and Serine Protease Inhibitors: Developing Novel Indirect-Acting Antiviral Strategies Against Hepatitis C Virus
PROPROTEIN CONVERTASES AND SERINE PROTEASE INHIBITORS: DEVELOPING NOVEL INDIRECT-ACTING ANTIVIRAL STRATEGIES AGAINST HEPATITIS C VIRUS by Andrea D. Olmstead B.Sc., The University of Saskatchewan, 2005 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES (Microbiology and Immunology) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) December 2011 © Andrea D. Olmstead, 2011 Abstract Hepatitis C virus (HCV) utilizes host lipids for every stage of its lifecycle. HCV hijacks host lipid droplets (LDs) to coordinate assembly through the host lipoprotein assembly pathway; this facilitates uptake into hepatocytes through the low density lipoprotein receptor (LDLR). Induction of host lipid metabolism by HCV supports chronic infection and leads to steatosis, exacerbating liver dysfunction in infected patients. One pathway activated by HCV is the sterol regulatory element binding protein (SREBP) pathway which controls lipid metabolism gene expression. To activate genes in the nucleus, SREBPs must first be cleaved by host subtilisin kexin isozyme-1/site-1 protease (SKI-1/S1P). Proprotein convertase subtilisin/kexin type 9 (PCSK9) is one SREBP-regulated protein that post-translationally decreases LDLR expression in the liver. The overall aim of this thesis was to determine the potential application of these two important regulators of host lipid homeostasis, PCSK9 and SKI-1/S1P, as targets for inhibiting HCV infection. The first hypothesis tested was that inhibiting SKI-1/S1P would block HCV hijacking of the SREBP pathway and limit sequestration of host lipids by HCV, blocking virus propagation. To inhibit SKI-1/S1P function, an engineered serine protease inhibitor (serpin) and a small molecule inhibitor were employed. -
Hepatitis C Viral Replication Complex
viruses Review Hepatitis C Viral Replication Complex Hui-Chun Li 1, Chee-Hing Yang 2 and Shih-Yen Lo 2,3,* 1 Department of Biochemistry, Tzu Chi University, Hualien 97004, Taiwan; [email protected] 2 Department of Laboratory Medicine and Biotechnology, Tzu Chi University, Hualien 97004, Taiwan; [email protected] 3 Department of Laboratory Medicine, Buddhist Tzu Chi General Hospital, Hualien 97004, Taiwan * Correspondence: [email protected]; Tel.: +886-3-8565301 (ext. 2322) Abstract: The life cycle of the hepatitis C virus (HCV) can be divided into several stages, including viral entry, protein translation, RNA replication, viral assembly, and release. HCV genomic RNA replication occurs in the replication organelles (RO) and is tightly linked to ER membrane alterations containing replication complexes (proteins NS3 to NS5B). The amplification of HCV genomic RNA could be regulated by the RO biogenesis, the viral RNA structure (i.e., cis-acting replication elements), and both viral and cellular proteins. Studies on HCV replication have led to the development of direct-acting antivirals (DAAs) targeting the replication complex. This review article summarizes the viral and cellular factors involved in regulating HCV genomic RNA replication and the DAAs that inhibit HCV replication. Keywords: hepatitis C virus; replication organelles; NS3 to NS5B proteins; direct-acting antivirals 1. Introduction Infection with the hepatitis C virus (HCV) can cause chronic hepatitis C (CHC), Citation: Li, H.-C.; Yang, C.-H.; Lo, liver cirrhosis, hepatocellular carcinoma, and other extra-hepatic manifestations. The S.-Y. Hepatitis C Viral Replication prevalence of CHC patients worldwide was around 71 million in 2017 (https://www.who. -
HCV NS3/4A Protease and Its Emerging Inhibitors
Journal of Analytical & Pharmaceutical Research HCV NS3/4A Protease and its Emerging Inhibitors Abstract Review Article Globally, Hepatitis C virus (HCV) is a leading cause of chronic liver disease, Volume 4 Issue 4 - 2017 hepatocellular carcinoma and cirrhosis and the most common reason for liver transplantation. Presently, the most common treatment for HCV infected patients is the combinations of pegylated interferon and ribavirin that provide a sustained response in patients, but its side effects are brutal. Therefore, attempts have 1 been made to target the two important enzymes, NS3 protease and NS5B RNA Department of Pharmaceutical Technology, Mahamaya Technical University, India polymerase, that are crucial for the replication of HCV. The article presents the 2Department of Applied Sciences, India development of some NS3/4A protease inhibitors that have reached the final 3Faculty of Pharmacy, India stages of clinical trials. *Corresponding author: Satya P Gupta, Department of Keywords: Hepatitis C virus; NS3/4A protease; Macrocyclic inhibitors; Linear Applied Sciences, National Institute of Technical Teacher’s inhibitors Training and Research (NITTTR), Bhopal 462002, India, Email: Received: February 27, 2017 | Published: April 04, 2017 Abbreviations: HCV: Hepatitis C Virus; RdRp: RNA Dependent It plays a critical role in producing the important components RNA Polymerase; NS: Nonstructural; TC-PTP: T Cell Protein for viral replication by cleaving the scissile bond between NS3- Tyrosine Phosphatase; MAVS: Mitochondrial Antiviral Signaling NS4A. Based on the available structure of HCV protease, there Protein are three possible sites for drug design, namely zinc binding site, NS4A binding groove, and substrate binding site, of which the last Introduction one has been found to be more promising. -
WO 2017/004022 A2 5 January 2017 (05.01.2017) P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2017/004022 A2 5 January 2017 (05.01.2017) P O P C T (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every A61K 39/12 (2006.01) C12Q 1/70 (2006.01) kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, (21) International Application Number: BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, PCT/US20 16/039792 DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, (22) International Filing Date: HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, 28 June 2016 (28.06.2016) KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, (25) Filing Language: English PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, (26) Publication Language: English SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (30) Priority Data: 62/186,339 29 June 2015 (29.06.2015) US (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, (71) Applicant: THE BOARD OF TRUSTEES OF THE LE- GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, LAND STANFORD JUNIOR UNIVERSITY [US/US]; TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, Office Of Technology Licensing, 3000 El Camino Real, TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, Building Five, Third Floor, Palo Alto, CA 94306 (US). -
Antiviral Therapy for Hepatitis C Virus: Beyond the Standard of Care
Viruses 2010, 2, 826-866; doi:10.3390/v2040826 OPEN ACCESS viruses ISSN 1999-4915 www.mdpi.com/journal/viruses Review Antiviral Therapy for Hepatitis C Virus: Beyond the Standard of Care Leen Delang †, Lotte Coelmont † and Johan Neyts * Rega Institute for Medical Research, KULeuven, Minderbroedersstraat 10, 3000 Leuven, Belgium; E-Mails: [email protected] (L.D.); [email protected] (L.C.) † These authors contributed equally to this work. * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +32-16-337-341; Fax: +32-16-337-340. Received: 15 December 2009; in revised form: 9 March 2010 / Accepted: 17 March 2010 / Published: 29 March 2010 Abstract: Hepatitis C virus (HCV) represents a major health burden, with an estimated 180 million chronically infected individuals worldwide. These patients are at increased risk of developing liver cirrhosis and hepatocellular carcinoma. Infection with HCV is the leading cause of liver transplantation in the Western world. Currently, the standard of care (SoC) consists of pegylated interferon alpha (pegIFN-α) and ribavirin (RBV). However this therapy has a limited efficacy and is associated with serious side effects. Therefore more tolerable, highly potent inhibitors of HCV replication are urgently needed. Both Specifically Targeted Antiviral Therapy for HCV (STAT-C) and inhibitors that are believed to interfere with the host-viral interaction are discussed. Keywords: HCV; new antivirals; review 1. Introduction HCV is a positive sense single-stranded RNA virus which belongs to the family of Flaviviridae, genus Hepacivirus. The 9.6 kb HCV genome encodes for a large polyprotein, that, following maturation results in at least 10 proteins: the structural proteins C, E1, E2 and p7 and the non-structural proteins NS2, NS3, NS4A, NS4B, NS5A and NS5B [1].