Environmental Immune Disruptors, Inflammation and Cancer Risk
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Molecular Profile of Tumor-Specific CD8+ T Cell Hypofunction in a Transplantable Murine Cancer Model
Downloaded from http://www.jimmunol.org/ by guest on September 25, 2021 T + is online at: average * The Journal of Immunology , 34 of which you can access for free at: 2016; 197:1477-1488; Prepublished online 1 July from submission to initial decision 4 weeks from acceptance to publication 2016; doi: 10.4049/jimmunol.1600589 http://www.jimmunol.org/content/197/4/1477 Molecular Profile of Tumor-Specific CD8 Cell Hypofunction in a Transplantable Murine Cancer Model Katherine A. Waugh, Sonia M. Leach, Brandon L. Moore, Tullia C. Bruno, Jonathan D. Buhrman and Jill E. Slansky J Immunol cites 95 articles Submit online. Every submission reviewed by practicing scientists ? is published twice each month by Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts http://jimmunol.org/subscription Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html http://www.jimmunol.org/content/suppl/2016/07/01/jimmunol.160058 9.DCSupplemental This article http://www.jimmunol.org/content/197/4/1477.full#ref-list-1 Information about subscribing to The JI No Triage! Fast Publication! Rapid Reviews! 30 days* Why • • • Material References Permissions Email Alerts Subscription Supplementary The Journal of Immunology The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2016 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. This information is current as of September 25, 2021. The Journal of Immunology Molecular Profile of Tumor-Specific CD8+ T Cell Hypofunction in a Transplantable Murine Cancer Model Katherine A. -
Microbial and Plant-Assisted Bioremediation of Heavy Metal Polluted Environments: a Review
International Journal of Environmental Research and Public Health Review Microbial and Plant-Assisted Bioremediation of Heavy Metal Polluted Environments: A Review Omena Bernard Ojuederie and Olubukola Oluranti Babalola * ID Food Security and Safety Niche Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Mail Bag X2046, Mmabatho 2735, South Africa; [email protected] * Correspondence: [email protected]; Tel.: +27-786551839 Received: 15 September 2017; Accepted: 30 November 2017; Published: 4 December 2017 Abstract: Environmental pollution from hazardous waste materials, organic pollutants and heavy metals, has adversely affected the natural ecosystem to the detriment of man. These pollutants arise from anthropogenic sources as well as natural disasters such as hurricanes and volcanic eruptions. Toxic metals could accumulate in agricultural soils and get into the food chain, thereby becoming a major threat to food security. Conventional and physical methods are expensive and not effective in areas with low metal toxicity. Bioremediation is therefore an eco-friendly and efficient method of reclaiming environments contaminated with heavy metals by making use of the inherent biological mechanisms of microorganisms and plants to eradicate hazardous contaminants. This review discusses the toxic effects of heavy metal pollution and the mechanisms used by microbes and plants for environmental remediation. It also emphasized the importance of modern biotechnological techniques and approaches in improving the ability of microbial enzymes to effectively degrade heavy metals at a faster rate, highlighting recent advances in microbial bioremediation and phytoremediation for the removal of heavy metals from the environment as well as future prospects and limitations. However, strict adherence to biosafety regulations must be followed in the use of biotechnological methods to ensure safety of the environment. -
Large Meta-Analysis of Genome-Wide Association Studies
medRxiv preprint doi: https://doi.org/10.1101/2020.10.01.20200659; this version posted October 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license . Large meta-analysis of genome-wide association studies expands knowledge of the genetic etiology of Alzheimer’s disease and highlights potential translational opportunities Céline Bellenguez1,*,#, Fahri Küçükali2,3,4*, Iris Jansen5,6*, Victor Andrade7,8*, Sonia Morenau- Grau9,10,*, Najaf Amin11,12, Benjamin Grenier-Boley1, Anne Boland13, Luca Kleineidam7,8, Peter Holmans14, Pablo Garcia9,10, Rafael Campos Martin7, Adam Naj15,16, Yang Qiong17, Joshua C. Bis18, Vincent Damotte1, Sven Van der Lee5,6,19, Marcos Costa1, Julien Chapuis1, Vilmentas Giedraitis20, María Jesús Bullido10,21, Adolfo López de Munáin10,22, Jordi Pérez- Tur10,23, Pascual Sánchez-Juan10,24, Raquel Sánchez-Valle25, Victoria Álvarez26, Pau Pastor27, Miguel Medina10,28, Jasper Van Dongen2,3,4, Christine Van Broeckhoven2,3,4, Rik Vandenberghe29,30, Sebastiaan Engelborghs31,32, Gael Nicolas33, Florence Pasquier34, Olivier Hanon35, Carole Dufouil36, Claudine Berr37, Stéphanie Debette36, Jean-François Dartigues36, Gianfranco Spalletta38, Benedetta Nacmias39,40, Vincenzo Solfrezzi41, Barbara Borroni42, Lucio Tremolizzo43, Davide Seripa44, Paolo Caffarra45, Antonio Daniele46,47, Daniela Galimberti48,49, Innocenzo Rainero50, Luisa Benussi51, Alesio Squassina52, Patrizia Mecoci53, Lucilla Parnetti54, Carlo Masullo55, Beatrice Arosio56, John Hardy57, Simon Mead58, Kevin Morgan59, Clive Holmes60, Patrick Kehoe61, Bob Woods62, EADB, Charge, ADGC, Jin Sha15,16, Yi Zhao15,63, Chien-Yueh Lee15,63, Pavel P. -
NATURAL KILLER CELLS, HYPOXIA, and EPIGENETIC REGULATION of HEMOCHORIAL PLACENTATION by Damayanti Chakraborty Submitted to the G
NATURAL KILLER CELLS, HYPOXIA, AND EPIGENETIC REGULATION OF HEMOCHORIAL PLACENTATION BY Damayanti Chakraborty Submitted to the graduate degree program in Pathology and Laboratory Medicine and the Graduate Faculty of the University of Kansas in partial fulfillment ofthe requirements for the degree of Doctor of Philosophy. ________________________________ Chair: Michael J. Soares, Ph.D. ________________________________ Jay Vivian, Ph.D. ________________________________ Patrick Fields, Ph.D. ________________________________ Soumen Paul, Ph.D. ________________________________ Michael Wolfe, Ph.D. ________________________________ Adam J. Krieg, Ph.D. Date Defended: 04/01/2013 The Dissertation Committee for Damayanti Chakraborty certifies that this is the approved version of the following dissertation: NATURAL KILLER CELLS, HYPOXIA, AND EPIGENETIC REGULATION OF HEMOCHORIAL PLACENTATION ________________________________ Chair: Michael J. Soares, Ph.D. Date approved: 04/01/2013 ii ABSTRACT During the establishment of pregnancy, uterine stromal cells differentiate into decidual cells and recruit natural killer (NK) cells. These NK cells are characterized by low cytotoxicity and distinct cytokine production. In rodent as well as in human pregnancy, the uterine NK cells peak in number around mid-gestation after which they decline. NK cells associate with uterine spiral arteries and are implicated in pregnancy associated vascular remodeling processes and potentially in modulating trophoblast invasion. Failure of trophoblast invasion and vascular remodeling has been shown to be associated with pathological conditions like preeclampsia syndrome, hypertension in mother and/or fetal growth restriction. We hypothesize that NK cells fundamentally contribute to the organization of the placentation site. In order to study the in vivo role of NK cells during pregnancy, gestation stage- specific NK cell depletion was performed in rats using anti asialo GM1 antibodies. -
Part 1. General Microbiology & Medical Immunology
I.I. Generalov MEDICAL MICROBIOLOGY, VIROLOGY & IMMUNOLOGY Part 1. General Microbiology & Medical Immunology Lecture Course for Students of Medical Universities VITEBSK STATE MEDICAL UNIVERSITY 2016 УДК [579+616.31]=111(07) ББК 52.64 я73+56.6 я73 Г 34 Printed according to the decision of Educational&Methodological Concociation on Medical Education (July 1, 2016) Reviewed by: D.V.Tapalsky, MD, PhD, Head of Microbiology, Virology and Immunology Dpt, Gomel State Medical University Microbiology, Virology and Immunology Dpt, Belarussian State Medical University, Minsk Generalov I.I. Г 34 Medical Microbiology, Virology and Immunology. Part 1. General Microbiology & Medical Immunology – Lecture Course for students of medical universities / I.I. Generalov. – Vitebsk, - VSMU. - 2016. - 282 p. ISBN 978-985-466-743-0 The Lecture Course on Medical Microbiology, Virology and Immunology accumulates a broad scope of data covering the most essential areas of medical microbiology. The textbook is composed according to the educational standard, plan and program, approved by Ministry of Education and Ministry of Health Care of Republic of Belarus. This edition encompasses all basic sections of the subject – General Microbiology, Medical Immunology, Medical Bacteriology and Virology. Part 1 of the Lecture Course comprises General Microbiology and Medical Immunology sections. This book is directed for students of General Medicine faculties and Dentistry faculties of higher educational establishments. УДК [579+616.31]=111(07) ББК 52.64 я73+56.6 я73 © Generalov I.I., 2016 © VSMU Press, 2016 ISBN 978-985-466-743-0 2 CONTENTS Pages Abbreviation list 5 Section 1. GENERAL MICROBIOLOGY` 8 Chapter 1. The subject and basic fields of modern microbiology. -
Associated 16P11.2 Deletion in Drosophila Melanogaster
ARTICLE DOI: 10.1038/s41467-018-04882-6 OPEN Pervasive genetic interactions modulate neurodevelopmental defects of the autism- associated 16p11.2 deletion in Drosophila melanogaster Janani Iyer1, Mayanglambam Dhruba Singh1, Matthew Jensen1,2, Payal Patel 1, Lucilla Pizzo1, Emily Huber1, Haley Koerselman3, Alexis T. Weiner 1, Paola Lepanto4, Komal Vadodaria1, Alexis Kubina1, Qingyu Wang 1,2, Abigail Talbert1, Sneha Yennawar1, Jose Badano 4, J. Robert Manak3,5, Melissa M. Rolls1, Arjun Krishnan6,7 & 1234567890():,; Santhosh Girirajan 1,2,8 As opposed to syndromic CNVs caused by single genes, extensive phenotypic heterogeneity in variably-expressive CNVs complicates disease gene discovery and functional evaluation. Here, we propose a complex interaction model for pathogenicity of the autism-associated 16p11.2 deletion, where CNV genes interact with each other in conserved pathways to modulate expression of the phenotype. Using multiple quantitative methods in Drosophila RNAi lines, we identify a range of neurodevelopmental phenotypes for knockdown of indi- vidual 16p11.2 homologs in different tissues. We test 565 pairwise knockdowns in the developing eye, and identify 24 interactions between pairs of 16p11.2 homologs and 46 interactions between 16p11.2 homologs and neurodevelopmental genes that suppress or enhance cell proliferation phenotypes compared to one-hit knockdowns. These interac- tions within cell proliferation pathways are also enriched in a human brain-specific network, providing translational relevance in humans. Our study indicates a role for pervasive genetic interactions within CNVs towards cellular and developmental phenotypes. 1 Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA. 2 Bioinformatics and Genomics Program, The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA. -
Dr. Subhankar Chatterjee Assistant Professor, Department of Environmental Science School of Earth and Environmental Sciences, CUHP
Dr. Subhankar Chatterjee Assistant Professor, Department of Environmental Science School of Earth and Environmental Sciences, CUHP Contact Details: School of Earth and Environmental Sciences, Department of Environmental Sciences, Central University of Himachal Pradesh, Temporary Academic Block, Shahpur, Dist.- Kangra, HP- 176206; India. Phone: +91-1892 237288, Ext-311; Mobile: +91-8894500689; E-mail: [email protected]; [email protected] Academic Qualification: Ph.D. in Science (2007) Awarded by Jadavpur University, Kolkata, India (Graduate work was carried out at Department of Microbiology, Bose Institute, Kolkata, India) Thesis Title: Microbial Fate of Estrogenic Phthalate Esters in the Environment: Biochemical and Molecular Analysis Thesis Supervisor: Prof. Tapan K. Dutta (Bose Inst. Kolkata) M.Sc. in Chemistry (1999) University of Calcutta, Kolkata, India Positions Held: December, 2012 – till date – Assistant Professor, Dept. Of Environmental Science, Central University of Himachal Pradesh, Dharamshala, HP; From February, 2017 To November 2019 - In-Charge, Department of Chemistry and Chemical Sciences Central University of Himachal Pradesh, Dharamshala, HP. May, 2012 – December, 2012 – Biomedical Post doctoral Research Fellow, Department of Pharmacology, Perelman School of Medicine at the University of Pennsylvania, , PA, USA. March, 2011 – April, 2012 – DFG Post doctoral Research Scientist, Molecular Phytopathology and Mycotoxin Research, Georg-August University of Goettingen, Goettingen, Germany. August, 2008 – September, 2010 - Alexander von Humboldt Research Fellow at Georg-August University of Goettingen, Goettingen, Germany. September, 2007 - July, 2008 – Postdoctoral Research Associate, Dept. of Biological Chemistry, Indian Association for the Cultivation of Science, Kolkata, India. Page 1 of 12 July, 2002 - July, 2007 – Junior and Senior Research Fellow, Dept. of Microbiology, Bose Institute, Kolkata, India. -
Bioremediation 3.0: Engineering Pollutant-Removing Bacteria in the Times of MARK Systemic Biology
Biotechnology Advances 35 (2017) 845–866 Contents lists available at ScienceDirect Biotechnology Advances journal homepage: www.elsevier.com/locate/biotechadv Research review paper Bioremediation 3.0: Engineering pollutant-removing bacteria in the times of MARK systemic biology ⁎ Pavel Dvořáka, Pablo I. Nikelb,Jiří Damborskýc,d, Víctor de Lorenzoa, a Systems and Synthetic Biology Program, Centro Nacional de Biotecnología (CNB-CSIC), 28049 Madrid, Spain b The Novo Nordisk Foundation Center for Biosustainability, 2800 Lyngby, Denmark c Loschmidt Laboratories, Centre for Toxic Compounds in the Environment RECETOX, Department of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic d International Clinical Research Center, St. Anne's University Hospital, Pekarska 53, 656 91 Brno, Czech Republic ARTICLE INFO ABSTRACT Keywords: Elimination or mitigation of the toxic effects of chemical waste released to the environment by industrial and Bioremediation urban activities relies largely on the catalytic activities of microorganisms—specifically bacteria. Given their Biodegradation pathway engineering capacity to evolve rapidly, they have the biochemical power to tackle a large number of molecules mobilized Emerging pollutants from their geological repositories through human action (e.g., hydrocarbons, heavy metals) or generated through Environmental biotechnology chemical synthesis (e.g., xenobiotic compounds). Whereas naturally occurring microbes already have con- Systemic biology siderable ability to remove many environmental pollutants with no external intervention, the onset of genetic Metabolic engineering fi Systems biology engineering in the 1980s allowed the possibility of rational design of bacteria to catabolize speci c compounds, Synthetic biology which could eventually be released into the environment as bioremediation agents. The complexity of this endeavour and the lack of fundamental knowledge nonetheless led to the virtual abandonment of such a re- combinant DNA-based bioremediation only a decade later. -
Microbial Biodegradation of Aromatic Compounds in a Soil Contaminated with Gasohol
British Biotechnology Journal 1(2): 18-28, 2011 SCIENCEDOMAIN international www.sciencedomain.org Microbial Biodegradation of Aromatic Compounds in a Soil Contaminated with Gasohol A. G. Parreira1, M. R. Tótola2, G. N. Jham2, S. L. Da Silva1* and A. C. Borges2 1Protein Chemistry and Nanobiotechnology Laboratory, Federal University of São João Del Rei, Divinópolis, MG, Brazil. 2Laboratory of Environmental Biotechnology and Biodiversity, Federal University of Viçosa, Viçosa, MG, Brazil. th Research Article Received 20 March 2011 Accepted 11th April 2011 Online Ready 25th April 2011 ABSTRACT The studies developed in this work aimed to find alternatives to biodegradation or bioremediation of soils contaminated with gasoline or gasohol. So, the biodegradation of benzene, toluene and o-xylene (BTX) in soil samples contaminated with gasoline or gasohol by a bacterial consortium was studied. Four bacterial strains were selected for the consortium based on their growth capacity in gasoline, gasohol and BTX as sole carbon sources, and on the production of biosurfactants in mineral medium containing gasohol as the sole carbon source. The reduction of TX concentrations in soil slurries in a multi-cell bioreactor system was used as the criterion to evaluate biodegradation efficiency. BTX removal was highly stimulated by air injection and mineral nutrients, and was significantly increased by the presence of the bacterial consortium. Addition of a proprietary oxygen release compound did not stimulate the biodegradation of BTX. Keywords: Bioremediation; Biodegradation; Hydrocarbons; Bacterial consortium; ORC; 1. INTRODUCTION The release of petroleum products (e.g., gasoline, diesel, fuel oil) from above-ground and underground storage tanks or transport pipelines are the major causes of groundwater pollution. -
Genome-Wide Profiling of Promoter Methylation in Human
Oncogene (2006) 25, 3059–3064 & 2006 Nature Publishing Group All rights reserved 0950-9232/06 $30.00 www.nature.com/onc TECHNICAL REPORT Genome-wide profiling of promoter methylation in human I Hatada1,2, M Fukasawa1,2, M Kimura1,2, S Morita1,2, K Yamada3, T Yoshikawa3, S Yamanaka4,5, C Endo4, A Sakurada4, M Sato4, T Kondo4, A Horii5, T Ushijima6 and H Sasaki7,8 1Laboratory of Genome Science, Biosignal Genome Resource Center, Department of Molecular and Cellular Biology, Gunma University, Maebashi, Japan; 2PRESTO, Japan Science and Technology Corporation (JST), Kawaguchi, Japan; 3Laboratory for Molecular Psychiatry, RIKEN Brain Science Institute, Wako, Japan, 4Department of Thoracic Surgery, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan; 5Department of Molecular Pathology, Tohoku University School of Medicine, Sendai, Japan; 6Carcinogenesis Division, National Cancer Center Research Institute, Chuo-ku, Tokyo, Japan; 7Division of Human Genetics, Department of Integrated Genetics, National Institute of Genetics, Research Organization of Information and Systems, Mishima, Japan and 8Department of Genetics, School of Life Science, Graduate University for Advanced Studies, Mishima, Japan DNA methylation in the promoter region of a gene is Microarray-based methods of comparing differences in associated with a loss of that gene’s expression and plays DNA methylation in the genome of two samples using an important role in gene silencing. The inactivation of methylation-sensitive restriction enzymes (Yan et al., tumor-suppressor genes by aberrant methylation in the 2001; Hatada et al., 2002) have two problems. The first promoter region is well recognized in carcinogenesis. is that the microarrays contain clones from libraries of However, there has been little study in this area when it CpG islands. -
YPEL3, a P53-Regulated Gene That Induces Cellular Senescence
Published OnlineFirst April 13, 2010; DOI: 10.1158/0008-5472.CAN-09-3219 Molecular and Cellular Pathobiology Cancer Research YPEL3, a p53-Regulated Gene that Induces Cellular Senescence Kevin D. Kelley1, Kelly R. Miller1, Amber Todd1, Amy R. Kelley1, Rebecca Tuttle2, and Steven J. Berberich1 Abstract Cellular senescence, the limited ability of cultured normal cells to divide, can result from cellular damage triggered through oncogene activation (premature senescence) or the loss of telomeres following successive rounds of DNA replication (replicative senescence). Although both processes require a functional p53 signaling pathway, relevant downstream p53 targets have been difficult to identify. Discovery of senescence activators is important because induction of tumor cell senescence may represent a therapeutic approach for the treat- ment of cancer. In microarray studies in which p53 was reactivated in MCF7 cells, we discovered that Yippee- like-3 (YPEL3), a member of a recently discovered family of putative zinc finger motif coding genes consisting of YPEL1-5, is a p53-regulated gene. YPEL3 expression induced by DNA damage leads to p53 recruitment to a cis-acting DNA response element located near the human YPEL3 promoter. Physiologic induction of YPEL3 results in a substantial decrease in cell viability associated with an increase in cellular senescence. Through the use of RNAi and H-ras induction of cellular senescence, we show that YPEL3 activates cellular senescence downstream of p53. Consistent with its growth suppressive activity, YPEL3 gene expression is repressed in ovarian tumor samples. One mechanism of YPEL3 downregulation in ovarian tumor cell lines seems to be hypermethylation of a CpG island upstream of the YPEL3 promoter. -
YPEL3 Antibody Cat
YPEL3 Antibody Cat. No.: 6775 Western blot analysis of YPEL3 in A-20 cell lysate with YPEL3 antibody at 1 μg/mL in (A) the absence and (B) the presence of blocking peptide Immunocytochemistry of YPEL3 in A20 cells with YPEL3 Immunofluorescence of YPEL3 in A20 cells with YPEL3 antibody at 2.5 μg/mL. antibody at 5 μg/mL. Specifications HOST SPECIES: Rabbit SPECIES REACTIVITY: Human, Mouse, Rat HOMOLOGY: Predicted species reactivity based on immunogen sequence: Bovine: (100%) YPEL3 antibody was raised against a 15 amino acid synthetic peptide near the amino terminus of human YPEL3. IMMUNOGEN: The immunogen is located within amino acids 20 - 70 of YPEL3. TESTED APPLICATIONS: ELISA, ICC, IF, WB September 28, 2021 1 https://www.prosci-inc.com/ypel3-antibody-6775.html YPEL3 antibody can be used for detection of YPEL3 by Western blot at 1 μg/mL. Antibody can also be used for immunocytochemistry starting at 2.5 μg/mL. For immunofluorescence start at 2.5 μg/mL. APPLICATIONS: Antibody validated: Western Blot in mouse samples; Immunocytochemistry in mouse samples and Immunofluorescence in mouse samples. All other applications and species not yet tested. POSITIVE CONTROL: 1) Cat. No. 1288 - A20 Cell Lysate 2) Cat. No. 17-208 - A-20 Cell Slide Properties PURIFICATION: YPEL3 Antibody is affinity chromatography purified via peptide column. CLONALITY: Polyclonal ISOTYPE: IgG CONJUGATE: Unconjugated PHYSICAL STATE: Liquid BUFFER: YPEL3 Antibody is supplied in PBS containing 0.02% sodium azide. CONCENTRATION: 1 mg/mL YPEL3 antibody can be stored at 4˚C for three months and -20˚C, stable for up to one STORAGE CONDITIONS: year.