The Nnos-P38mapk Pathway Is Mediated by NOS1AP During Neuronal Death
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1 Evidence for Gliadin Antibodies As Causative Agents in Schizophrenia
1 Evidence for gliadin antibodies as causative agents in schizophrenia. C.J.Carter PolygenicPathways, 20 Upper Maze Hill, Saint-Leonard’s on Sea, East Sussex, TN37 0LG [email protected] Tel: 0044 (0)1424 422201 I have no fax Abstract Antibodies to gliadin, a component of gluten, have frequently been reported in schizophrenia patients, and in some cases remission has been noted following the instigation of a gluten free diet. Gliadin is a highly immunogenic protein, and B cell epitopes along its entire immunogenic length are homologous to the products of numerous proteins relevant to schizophrenia (p = 0.012 to 3e-25). These include members of the DISC1 interactome, of glutamate, dopamine and neuregulin signalling networks, and of pathways involved in plasticity, dendritic growth or myelination. Antibodies to gliadin are likely to cross react with these key proteins, as has already been observed with synapsin 1 and calreticulin. Gliadin may thus be a causative agent in schizophrenia, under certain genetic and immunological conditions, producing its effects via antibody mediated knockdown of multiple proteins relevant to the disease process. Because of such homology, an autoimmune response may be sustained by the human antigens that resemble gliadin itself, a scenario supported by many reports of immune activation both in the brain and in lymphocytes in schizophrenia. Gluten free diets and removal of such antibodies may be of therapeutic benefit in certain cases of schizophrenia. 2 Introduction A number of studies from China, Norway, and the USA have reported the presence of gliadin antibodies in schizophrenia 1-5. Gliadin is a component of gluten, intolerance to which is implicated in coeliac disease 6. -
Lipid Related Genes Altered in NASH Connect Inflammation in Liver Pathogenesis Progression to HCC: a Canonical Pathway
Lipid related genes altered in NASH connect inflammation in liver pathogenesis progression to HCC: a canonical pathway Christophe Desterke1, Franck Chiappini2* 1 Inserm, U935, Villejuif, F-94800, France 2 Cell Growth and Tissue Repair (CRRET) Laboratory, Université Paris-Est Créteil (UPEC), EA 4397 / ERL CNRS 9215, F-94010, Créteil, France. Corresponding author: *Franck Chiappini. Laboratoire du CRRET (Croissance, Réparation et Régénération Tissulaires), Université Paris-Est Créteil, 61 avenue du Général de Gaulle F- 94010, Créteil Cedex, Val de Marne, France. Email address: [email protected]; Tel: +33(0)145177080; Fax: +33(0)145171816 Supplementary Information Supplementary Datasets Table S1: Text-mining list of genes associated in PubMed literature with lipid related keywords. Supplementary Datasets Table S2: Expression fold change of lipid related genes found differentially expressed between NASH and healthy obese liver samples. Supplementary Datasets Table S3: Liver as principal filter for prioritization of lipid related genes found differentially expressed in NASH. Supplementary Datasets Table S4: Gene prioritization secondary filters (immunological, inflammation, liver pathogenesis progression) table found with lipid related genes differentially expressed in NASH. Supplementary Datasets Table S5: Identification of protein partners of YWHAZ gene using InnateDB database. Supplementary Datasets Table S1: Text-mining list of genes associated in PubMed literature with lipid related keywords. Ranking of "lipidic" textmining Gene symbol -
The Genetic Variation Rs12143842 in NOS1AP Increases Idiopathic
www.nature.com/scientificreports OPEN The genetic variation rs12143842 in NOS1AP increases idiopathic ventricular tachycardia risk in Received: 21 December 2016 Accepted: 14 July 2017 Chinese Han populations Published: xx xx xxxx Ronfeng Zhang, Feifei Chen, Honjiu Yu, Lianjun Gao, Xiaomeng Yin, Yingxue Dong, Yanzong Yang & Yunlong Xia Genome-wide association studies identified that the common T of rs12143842 in NOS1AP is associated with a QT/QTc interval in European populations. In this study, we test the association between the variation rs12143842 in NOS1AP and idiopathic ventricular tachycardia (IVT). A case-control association study examining rs12143842 was performed in two independent cohorts. The Northern cohort enrolled 277 IVT patients and 728 controls from a Chinese Gene ID population. The Central cohort enrolled 301 IVT patients and 803 matched controls. Genotyping was performed using high-resolution melt analysis. The minor T allele of the rs12143842 SNP was significantly associated with decreased IVT risk in the Northern cohort (adjusted P = 0.024, OR 0.71(0.52~0.96)), and this association was replicated in an independent Central Gene ID cohort (adjusted P = 0.029, OR 0.78 (0.62~0.97)). The association was more significant in the combined population (adjustedP = 0.001, OR 0.76 (0.64~0.90)). The P values for the genotypic association were significant for the dominant (P < 0.001) and additive (P = 0.001) models. The minor T allele for the SNP rs12143842 in NOS1AP is significantly associated with IVT.NOS1AP might be a novel gene affecting IVT, and further functional studies should be performed. -
Pathogenesis of Coronary Artery Disease: Focus on Genetic Risk Factors and Identification of Genetic Variants
The Application of Clinical Genetics Dovepress open access to scientific and medical research Open Access Full Text Article REVIEW Pathogenesis of coronary artery disease: focus on genetic risk factors and identification of genetic variants Sergi Sayols-Baixeras Abstract: Coronary artery disease (CAD) is the leading cause of death and disability worldwide, Carla Lluís-Ganella and its prevalence is expected to increase in the coming years. CAD events are caused by the Gavin Lucas interplay of genetic and environmental factors, the effects of which are mainly mediated through Roberto Elosua cardiovascular risk factors. The techniques used to study the genetic basis of these diseases have evolved from linkage studies to candidate gene studies and genome-wide association studies. Cardiovascular Epidemiology and Genetics Research Group, Institut Linkage studies have been able to identify genetic variants associated with monogenic diseases, Hospital del Mar d’Investigacions whereas genome-wide association studies have been more successful in determining genetic Mèdiques, Barcelona, Spain variants associated with complex diseases. Currently, genome-wide association studies have identified approximately 40 loci that explain 6% of the heritability of CAD. The application of this knowledge to clinical practice is challenging, but can be achieved using various strategies, such as genetic variants to identify new therapeutic targets, personal genetic information to improve disease risk prediction, and pharmacogenomics. The main aim of this narrative review is to provide a general overview of our current understanding of the genetics of coronary artery disease and its potential clinical utility. Keywords: coronary artery disease, pathogenesis, genetic risk factors, genetic variants Introduction Coronary artery disease (CAD) is the principal individual cause of mortality and morbidity worldwide. -
Effects of in Utero Exposure to Di-N-Butyl Phthalate on Testicular
Article Effects of In Utero Exposure to Di‐n‐Butyl Phthalate on Testicular Development in Rat Tan Ma 1,2,†, Xiaoqin Yin 1,2,†, Ruitong Han 1,2, Jie Ding 1,2, Huan Zhang 3,*, Xiaodong Han 1,2,* and Dongmei Li 1,2,* 1 Immunology and Reproduction Biology Laboratory & State Key Laboratory of Analytical Chemistry for Life Science, Medical School, Nanjing University, Nanjing 210093, China; [email protected] (T.M.); [email protected] (X.Y.); [email protected] (R.H.); [email protected] (J.D.) 2 Jiangsu Key Laboratory of Molecular Medicine, Nanjing University, Nanjing 210093, China 3 Department of Clinical and Experimental Medicine, Linköping University, SE‐581 83 Linköping, Sweden * Correspondence: [email protected] (H.Z.); [email protected] (X.H.); [email protected] (D.L.) † These authors contributed equally to this work. Received: 17 October 2017; Accepted: 20 October 2017; Published: 24 October 2017 Abstract: Humans are inevitably exposed to ubiquitous phthalate esters (PAEs). In utero exposure to di‐n‐butyl phthalate (DBP) induces abnormal development of the testis and reproductive tract in male offspring, which correspond closely with the human condition of testicular dysgenesis syndrome (TDS)‐like syndrome. However, the underlying mechanisms have not been elucidated in detail. In this study, pregnant rats were orally exposed to either corn oil (controls) or DBP at three different doses by gavage during Gestational Days 12.5–21.5. Pathological examinations were performed for toxicity evaluation. Proliferation and apoptosis related proteins (ras related dexamethasone induced 1 (Rasd1), mitogen‐activated protein kinase kinases1/2 (MEK1/2), Bcl‐2, and Bax) were measured for mechanisms exploration. -
Role of Estrogen and RAS Signaling in Repeated Implantation Failure
BMB Rep. 2018; 51(5): 225-229 BMB www.bmbreports.org Reports Invited Mini Review Role of estrogen and RAS signaling in repeated implantation failure Kwonho Hong1 & Youngsok Choi2,* 1Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Seoul 05029, 2Department of Biomedical Science, CHA University, Seongnam 13488, Korea In humans, hormonal regulation is crucial for the preparation RAS signal as well as the implications for patient with repeated of uterine environment leading to either successful implantation failure. implantation or menstrual cycle. Estrogen is a pivotal female steroid hormone that regulates the uterine dynamics along ESTROGEN SIGNALING with progesterone in the estrous and menstrual cycles in humans. Estrogen signals act via nuclear estrogen receptor or Estrogen production from the ovary during the estrous or membrane-bound receptor. The membrane-bound estrogen menstrual cycle receptor plays a crucial role in the rapid response of estrogen Estrogen exists in three forms such as estrone, estradiol, and in the uterine epithelium. Recently, RASD1 has received estriol (1, 2). Estrogen is produced in various tissues including attention as a novel signal transducer of estrogen in various the ovary, placenta, fat, and the liver in females (3, 4). It is the systems including female reproductive organs. In this review, primary source of estrogen production. Two different somatic we discuss the regulation of estrogen and RASD1 signaling in cells known as theca and granulosa cells surround the oocyte the uterus and also provide insights into RAS as a novel in the ovarian follicles (3-5). Estrogen biosynthesis depends on signaling molecule in repeated implantation failure. [BMB P450 aromatase enzyme activity, which catalyzes the Reports 2018; 51(5): 225-229] hydroxylation of estrogen precursors, adrostenedione or testosterone (Fig. -
Single-Cell Transcriptome Profiling of the Kidney Glomerulus Identifies Key Cell Types and Reactions to Injury
BASIC RESEARCH www.jasn.org Single-Cell Transcriptome Profiling of the Kidney Glomerulus Identifies Key Cell Types and Reactions to Injury Jun-Jae Chung ,1 Leonard Goldstein ,2 Ying-Jiun J. Chen,2 Jiyeon Lee ,1 Joshua D. Webster,3 Merone Roose-Girma,2 Sharad C. Paudyal,4 Zora Modrusan,2 Anwesha Dey,5 and Andrey S. Shaw1 Due to the number of contributing authors, the affiliations are listed at the end of this article. ABSTRACT Background The glomerulus is a specialized capillary bed that is involved in urine production and BP control. Glomerular injury is a major cause of CKD, which is epidemic and without therapeutic options. Single-cell transcriptomics has radically improved our ability to characterize complex organs, such as the kidney. Cells of the glomerulus, however, have been largely underrepresented in previous single-cell kidney studies due to their paucity and intractability. Methods Single-cell RNA sequencing comprehensively characterized the types of cells in the glomerulus from healthy mice and from four different disease models (nephrotoxic serum nephritis, diabetes, doxo- rubicin toxicity, and CD2AP deficiency). Results Allcelltypesintheglomeruluswereidentified using unsupervised clustering analysis. Novel marker genes and gene signatures of mesangial cells, vascular smooth muscle cells of the afferent and efferent arteri- oles, parietal epithelial cells, and three types of endothelial cells were identified. Analysis of the disease models revealed cell type–specific and injury type–specific responses in the glomerulus, including acute activation of the Hippo pathway in podocytes after nephrotoxic immune injury. Conditional deletion of YAP or TAZ resulted in more severe and prolonged proteinuria in response to injury, as well as worse glomerulosclerosis. -
Up-Regulating of RASD1 and Apoptosis of DU-145 Human Prostate Cancer Cells Induced by Formononetin in Vitro
DOI:http://dx.doi.org/10.7314/APJCP.2014.15.6.2835 Up-regulating of RASD1 and Apoptosis of DU-145 Human Prostate Cancer Cells Induced by Formononetin in Vitro RESEARCH ARTICLE Up-regulating of RASD1 and Apoptosis of DU-145 Human Prostate Cancer Cells Induced by Formononetin in Vitro Xiao-Jia Liu&, Yun-Qian Li&, Qiu-Yue Chen, Sheng-Jun Xiao, Si-En Zeng* Abstract Prostate cancer is one of the most prevalent malignant cancers in men. The isoflavone formononetin is a main active component of red clover plants. In the present study, we assessed the effect of formononetin on human prostate cancer DU-145 cells in vitro, and elucidated posssible mechanisms. DU-145 cells were treated with different concentrations of formononetin and cell proliferation was assessed by MTT assay, cell apoptosis by Hoechst 33258 and flow cytometry, and protein levels of RASD1, Bcl-2 and Bax by Western blotting. The results showed that formononetin inhibited the proliferation of DU-145 cells in a dose-dependent manner. DU-145 cells treated with different concentrations of formononetin displayed obvious morphological changes of apoptosis under fluorescence microscopy. In addition, formononetin increased the proportion of early apoptotic DU-145 cells, down-regulated the protein levels of Bcl-2 and up-regulated those of RASD1 and Bax. The level of RASD1 reached its maximum at 48h post-treatment, and rapidly decreased thereafter. Together, we present evidence that formononetin triggered cell apoptosis through the mitochondrial apoptotic pathway by up-regulating RASD1. Keywords: Formononetin - prostate cancer cells - apoptosis - RASD1 Asian Pac J Cancer Prev, 15 (6), 2835-2839 Introduction which has been wildly used for centuries. -
Biomarkers, Master Regulators and Genomic Fabric Remodeling in a Case of Papillary Thyroid Carcinoma
G C A T T A C G G C A T genes Article Biomarkers, Master Regulators and Genomic Fabric Remodeling in a Case of Papillary Thyroid Carcinoma Dumitru A. Iacobas Personalized Genomics Laboratory, CRI Center for Computational Systems Biology, Roy G Perry College of Engineering, Prairie View A&M University, Prairie View, TX 77446, USA; [email protected]; Tel.: +1-936-261-9926 Received: 1 August 2020; Accepted: 1 September 2020; Published: 2 September 2020 Abstract: Publicly available (own) transcriptomic data have been analyzed to quantify the alteration in functional pathways in thyroid cancer, establish the gene hierarchy, identify potential gene targets and predict the effects of their manipulation. The expression data have been generated by profiling one case of papillary thyroid carcinoma (PTC) and genetically manipulated BCPAP (papillary) and 8505C (anaplastic) human thyroid cancer cell lines. The study used the genomic fabric paradigm that considers the transcriptome as a multi-dimensional mathematical object based on the three independent characteristics that can be derived for each gene from the expression data. We found remarkable remodeling of the thyroid hormone synthesis, cell cycle, oxidative phosphorylation and apoptosis pathways. Serine peptidase inhibitor, Kunitz type, 2 (SPINT2) was identified as the Gene Master Regulator of the investigated PTC. The substantial increase in the expression synergism of SPINT2 with apoptosis genes in the cancer nodule with respect to the surrounding normal tissue (NOR) suggests that SPINT2 experimental overexpression may force the PTC cells into apoptosis with a negligible effect on the NOR cells. The predictive value of the expression coordination for the expression regulation was validated with data from 8505C and BCPAP cell lines before and after lentiviral transfection with DDX19B. -
An Important Region in Coronary Artery Disease: a Panel Approach to Investigation of the Coronary Artery Disease Etiology
Int J Cardiovasc Pract Review Article April 2019, Volume 4, Issue 2 (21-35) 9P21.3 locus; An Important Region in Coronary Artery Disease: A Panel Approach to Investigation of the Coronary Artery Disease Etiology Soodeh Omidi 1, Fatemeh Ebrahimzadeh 2, Samira Kalayinia 3,* 1 Department of Genetic, Faculty of Advanced Medical Technologies, Golestan University of Medical Science (GUMS), Gorgan, Iran 2 Department of Medical Biotechnology, School of Medicine, Zanjan University of Medical Sciences (ZUMS), Zanjan, Iran 3 Cardiogenetics Research Center, Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran * Corresponding author: Samira Kalayinia, Ph.D. Cardiogenetics Research Center, Rajaie Cardiovascular Medical and Research Center, Iran University of Medical DOI: 10.29252/ijcp-25001 Sciences, Tehran, Iran. Tel: +98-2123923033, Fax: +98-2122663213, E-mail: [email protected] Submitted: 07-04-2019 Abstract Accepted: 06-05-2019 Coronary artery disease (CAD) is a disease of major concern worldwide. It is the main Keywords: cause of mortality in many societies and improving the understanding about the CAD Etiology mechanism, progression and treatment, is necessary. Recent discovery of genetic factors Heart Disease underlying CAD has improved our knowledge of the disease in support of well-known Genome Wide Association traditional risk factors. Genotype-environment interaction is known as the main risk Study factor. Loci on many different chromosomes have been identified as a risk factors that © 2019. International Journal increase CAD susceptibility. Here we performed a comprehensive literature review of Cardiovascular Practice. pinpointing hotspot loci involved in CAD pathogenicity. The 9p21.3 locus is the most common region associated with CAD and its specific structure and function have been remarkable in many studies. -
NOS1AP Regulates Dendrite Patterning of Hippocampal Neurons Through a Carboxypeptidase E-Mediated Pathway
8248 • The Journal of Neuroscience, June 24, 2009 • 29(25):8248–8258 Cellular/Molecular NOS1AP Regulates Dendrite Patterning of Hippocampal Neurons through a Carboxypeptidase E-Mediated Pathway Damien Carrel,1* Yangzhou Du,1* Daniel Komlos,1,2 Norell M. Hadzimichalis,1 Munjin Kwon,1,3 Bo Wang,1 Linda M. Brzustowicz,4 and Bonnie L. Firestein1 1Department of Cell Biology and Neuroscience, 2Neuroscience Graduate Program, 3Molecular Biosciences Graduate Program, and 4Department of Genetics, Rutgers University, Piscataway, New Jersey 08854-8082 During neuronal development, neurons form elaborate dendritic arbors that receive signals from axons. Additional studies are needed to elucidate the factors regulating the establishment of dendritic patterns. Our work explored possible roles played by nitric oxide synthase 1 adaptor protein (NOS1AP; also known as C-terminal PDZ ligand of neuronal nitric oxide synthase or CAPON) in dendritic patterning of cultured hippocampal neurons. Here we report that the long isoform of NOS1AP (NOS1AP-L) plays a novel role in regulating dendrite outgrowth and branching. NOS1AP-L decreases dendrite number when overexpressed at any interval between day in vitro (DIV) 0 and DIV 12, and knockdown of NOS1AP-L results in increased dendrite number. In contrast, the short isoform of NOS1AP (NOS1AP-S) decreases dendrite number only when overexpressed during DIV 5–7. Using mutants of NOS1AP-L, we show that neither the PDZ- binding domain nor the PTB domain is necessary for the effects of NOS1AP-L. We have functionally narrowed the region of NOS1AP-L that mediates this effect to the middle amino acids 181–307, a region that is not present in NOS1AP-S. -
Single-Nucleotide Variations in Cardiac Arrhythmias: Prospects for Genomics and Proteomics Based Biomarker Discovery and Diagnostics
Genes 2014, 5, 254-269; doi:10.3390/genes5020254 OPEN ACCESS genes ISSN 2073-4425 www.mdpi.com/journal/genes Article Single-Nucleotide Variations in Cardiac Arrhythmias: Prospects for Genomics and Proteomics Based Biomarker Discovery and Diagnostics Ayman Abunimer 1, Krista Smith 1, Tsung-Jung Wu 1, Phuc Lam 2, Vahan Simonyan 2 and Raja Mazumder 1,3,* 1 Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA; E-Mails: [email protected] (A.A.); [email protected] (K.S.); [email protected] (T.-J.W.) 2 Center for Biologics Evaluation and Research, Food and Drug Administration, Rockville, MD 20852, USA; E-Mails: [email protected] (P.L.); [email protected] (V.S.) 3 McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +1-202-994-5004; Fax: +1-202-994-8974. Received: 21 November 2013; in revised form: 19 February 2014 / Accepted: 19 February 2014 / Published: 27 March 2014 Abstract: Cardiovascular diseases are a large contributor to causes of early death in developed countries. Some of these conditions, such as sudden cardiac death and atrial fibrillation, stem from arrhythmias—a spectrum of conditions with abnormal electrical activity in the heart. Genome-wide association studies can identify single nucleotide variations (SNVs) that may predispose individuals to developing acquired forms of arrhythmias. Through manual curation of published genome-wide association studies, we have collected a comprehensive list of 75 SNVs associated with cardiac arrhythmias. Ten of the SNVs result in amino acid changes and can be used in proteomic-based detection methods.