Downregulation of BRCA1-BRCA2-Containing Complex Subunit 3 Sensitizes Glioma Cells to Temozolomide
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FAQ505 -- BRCA1 and BRCA2 Mutations
AQ FREQUENTLY ASKED QUESTIONS FAQ505 fWOMEN’S HEALTH BRCA1 and BRCA2 Mutations • What is cancer? • What causes cancer? • What is hereditary breast and ovarian cancer syndrome? • What are BRCA1 and BRCA2? • How much do BRCA mutations increase the risk of breast cancer? • How much do BRCA mutations increase the risk of ovarian cancer? • Do BRCA mutations increase the risk of other types of cancer? • How common are BRCA mutations? • Should I be tested for BRCA mutations? • What is genetic counseling? • Why don’t doctors test everyone for BRCA mutations? • How is testing for BRCA mutations done? • What does a negative test result mean? • What does an unclear test result mean? • What does a positive test result mean? • How can you prevent cancer if you test positive for a BRCA mutation? • What breast cancer screening tests are available? • What ovarian screening tests are available? • What medication can help prevent breast cancer? • What medications can help prevent ovarian cancer? • Can surgery help prevent breast cancer? • What are the side effects of a mastectomy? • Can surgery help prevent ovarian cancer? • What are the side effects of removing the ovaries? • What else should I think about before choosing risk-reducing surgery? • I am concerned about discrimination based on genetic testing results. What should I know? • What should I know about direct-to-consumer genetic tests? • Glossary What is cancer? Normal cells in the body grow, divide, and are replaced on a routine basis. Sometimes, cells divide abnormally and begin to grow out of control. These cells may form growths or tumors.Tumors can be benign (not cancer) or malignant (cancer). -
BRCA1 and BRCA2 Play an Activities Have No Relevant Financial Relationships to Important Role in the Repair of Damaged DNA and the Disclose
Alaska Pharmacists Association Continuing Education Home Study Series Program 0139-0000-19-201-H04-P/T Genetic Mutations in Quarterly AKPhA Newsletter Cancer: BRCA1 and Release Date 10/07/2019 Expiration Date 10/07/2022 BRCA2 CPE Hours: 2.0 (0.2 CEU) Authors: This lesson is a knowledge-based CPE activity Danielle Hess, PharmD Candidate 2020 and is targeted to pharmacists and technicians Anne Marie Bott, PharmD, BCOP, BCPS, in all practice settings. NCPS, Alaska Native Medical Center Learning Objectives Cancer is a genetic disease that results from an At the completion of this activity, the participant accumulation of mutations in genes that normally will be able to: control cellular growth. This accumulation of mutations 1. State two positive changes you can make to can arise from either somatic or germinal tissue. While your practice following participation in this the majority of mutations are somatic and result from series. environmental exposures, lifestyle, the aging process, or simply chance, germline mutations are inherited. These 2. Summarize three practice updates or changes inherited mutations in specific tumor suppressor genes you acquired while participating in this series. and DNA mismatch genes predispose individuals to 1 Disclosure various hereditary cancer syndromes. The author(s) and other individuals responsible for Of the tumor suppressor genes associated with inherited planning AKPhA continuing pharmacy education cancer syndromes, BRCA1 and BRCA2 play an activities have no relevant financial relationships to important role in the repair of damaged DNA and the disclose. stability of genetic material within cells. However, when these genes are mutated or altered, the DNA repair Fees process may not function properly, which causes cells to CE processing is free for AKPhA members. -
Supplementary Table S1. Upregulated Genes Differentially
Supplementary Table S1. Upregulated genes differentially expressed in athletes (p < 0.05 and 1.3-fold change) Gene Symbol p Value Fold Change 221051_s_at NMRK2 0.01 2.38 236518_at CCDC183 0.00 2.05 218804_at ANO1 0.00 2.05 234675_x_at 0.01 2.02 207076_s_at ASS1 0.00 1.85 209135_at ASPH 0.02 1.81 228434_at BTNL9 0.03 1.81 229985_at BTNL9 0.01 1.79 215795_at MYH7B 0.01 1.78 217979_at TSPAN13 0.01 1.77 230992_at BTNL9 0.01 1.75 226884_at LRRN1 0.03 1.74 220039_s_at CDKAL1 0.01 1.73 236520_at 0.02 1.72 219895_at TMEM255A 0.04 1.72 201030_x_at LDHB 0.00 1.69 233824_at 0.00 1.69 232257_s_at 0.05 1.67 236359_at SCN4B 0.04 1.64 242868_at 0.00 1.63 1557286_at 0.01 1.63 202780_at OXCT1 0.01 1.63 1556542_a_at 0.04 1.63 209992_at PFKFB2 0.04 1.63 205247_at NOTCH4 0.01 1.62 1554182_at TRIM73///TRIM74 0.00 1.61 232892_at MIR1-1HG 0.02 1.61 204726_at CDH13 0.01 1.6 1561167_at 0.01 1.6 1565821_at 0.01 1.6 210169_at SEC14L5 0.01 1.6 236963_at 0.02 1.6 1552880_at SEC16B 0.02 1.6 235228_at CCDC85A 0.02 1.6 1568623_a_at SLC35E4 0.00 1.59 204844_at ENPEP 0.00 1.59 1552256_a_at SCARB1 0.02 1.59 1557283_a_at ZNF519 0.02 1.59 1557293_at LINC00969 0.03 1.59 231644_at 0.01 1.58 228115_at GAREM1 0.01 1.58 223687_s_at LY6K 0.02 1.58 231779_at IRAK2 0.03 1.58 243332_at LOC105379610 0.04 1.58 232118_at 0.01 1.57 203423_at RBP1 0.02 1.57 AMY1A///AMY1B///AMY1C///AMY2A///AMY2B// 208498_s_at 0.03 1.57 /AMYP1 237154_at LOC101930114 0.00 1.56 1559691_at 0.01 1.56 243481_at RHOJ 0.03 1.56 238834_at MYLK3 0.01 1.55 213438_at NFASC 0.02 1.55 242290_at TACC1 0.04 1.55 ANKRD20A1///ANKRD20A12P///ANKRD20A2/// -
Identification and Characterization of TPRKB Dependency in TP53 Deficient Cancers
Identification and Characterization of TPRKB Dependency in TP53 Deficient Cancers. by Kelly Kennaley A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Molecular and Cellular Pathology) in the University of Michigan 2019 Doctoral Committee: Associate Professor Zaneta Nikolovska-Coleska, Co-Chair Adjunct Associate Professor Scott A. Tomlins, Co-Chair Associate Professor Eric R. Fearon Associate Professor Alexey I. Nesvizhskii Kelly R. Kennaley [email protected] ORCID iD: 0000-0003-2439-9020 © Kelly R. Kennaley 2019 Acknowledgements I have immeasurable gratitude for the unwavering support and guidance I received throughout my dissertation. First and foremost, I would like to thank my thesis advisor and mentor Dr. Scott Tomlins for entrusting me with a challenging, interesting, and impactful project. He taught me how to drive a project forward through set-backs, ask the important questions, and always consider the impact of my work. I’m truly appreciative for his commitment to ensuring that I would get the most from my graduate education. I am also grateful to the many members of the Tomlins lab that made it the supportive, collaborative, and educational environment that it was. I would like to give special thanks to those I’ve worked closely with on this project, particularly Dr. Moloy Goswami for his mentorship, Lei Lucy Wang, Dr. Sumin Han, and undergraduate students Bhavneet Singh, Travis Weiss, and Myles Barlow. I am also grateful for the support of my thesis committee, Dr. Eric Fearon, Dr. Alexey Nesvizhskii, and my co-mentor Dr. Zaneta Nikolovska-Coleska, who have offered guidance and critical evaluation since project inception. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
BRCA1 and BRCA2 Full Gene Sequence Analysis and Common Deletion/Duplication Variants
BRCA1 and BRCA2 Full Gene Sequence Analysis and Common Deletion/Duplication Variants Testing includes full gene sequencing of exons and 25 base pairs of introns of BRCA 1 and 2 and the common deletions of BRCA1 (exon 13 del 3.835kb, exon 13 dup 6kb, exon 14-20 del 26kb, exon 22 del 510bp, exon 8-9 del 7.1kb). Sequencing does not include the promoter, enhancers or splicing modulators in intronic regions. Deletion duplication analysis is limited to the commonly reported variants; refer to full deletion/duplication testing. Indication: This testing is indicated for individuals that meet the criteria for Hereditary Breast and Ovarian Cancer listed in the National Comprehensive Cancer Network (NCCN) guidelines. For assistance with interpreting guidelines, please contact Henry Ford Precision Genomic Diagnostics, or refer to genetic counseling for evaluation. Testing on minors is not indicated. BRCA1 and BRCA2 are genes that code for proteins that help repair DNA damage. Inherited mutations in BRCA 1 or 2, in combination with additional acquired mutations, can result in increased risk for developing cancer. Specific mutations in BRCA1 and BRCA2 increase the risk of breast and ovarian cancers, and have been associated with increased risk of several additional types of cancer. BRCA1 and BRCA2 mutations account for about 20 to 25 percent of hereditary breast cancers and about 5 to 10 percent of all breast cancers. In addition, BRCA1 and BRCA2 account for about 15 percent of ovarian cancers overall. Breast and ovarian cancers associated with BRCA1 and BRCA2 mutations tend to develop at younger ages than their nonhereditary counterparts. -
Loss of BCL-3 Sensitises Colorectal Cancer Cells to DNA Damage, Revealing A
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.03.454995; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: Loss of BCL-3 sensitises colorectal cancer cells to DNA damage, revealing a role for BCL-3 in double strand break repair by homologous recombination Authors: Christopher Parker*1, Adam C Chambers*1, Dustin Flanagan2, Tracey J Collard1, Greg Ngo3, Duncan M Baird3, Penny Timms1, Rhys G Morgan4, Owen Sansom2 and Ann C Williams1. *Joint first authors. Author affiliations: 1. Colorectal Tumour Biology Group, School of Cellular and Molecular Medicine, Faculty of Life Sciences, Biomedical Sciences Building, University Walk, University of Bristol, Bristol, BS8 1TD, UK 2. Cancer Research UK Beatson Institute, Garscube Estate, Switchback Road, Bearsden Glasgow, G61 1BD UK 3. Division of Cancer and Genetics, School of Medicine, Cardiff University, Cardiff, CF14 4XN UK 4. School of Life Sciences, University of Sussex, Sussex House, Falmer, Brighton, BN1 9RH UK 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.08.03.454995; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract (250 words) Objective: The proto-oncogene BCL-3 is upregulated in a subset of colorectal cancers (CRC) and increased expression of the gene correlates with poor patient prognosis. The aim is to investigate whether inhibiting BCL-3 can increase the response to DNA damage in CRC. -
Identification and Characterization of Missense Alterations in the BRCA1
633 ORIGINAL ARTICLE Identification and characterization of missense alterations in the BRCA1 associated RING domain (BARD1) gene in breast and ovarian cancer M K Sauer, I L Andrulis ............................................................................................................................... J Med Genet 2005;42:633–638. doi: 10.1136/jmg.2004.030049 Background: BRCA1 associated RING domain protein (BARD1) was originally identified due to its interaction with the RING domain of BRCA1. BARD1 is required for S phase progression, contact inhibition and normal nuclear division, as well as for BRCA1 independent, p53 dependent apoptosis. See end of article for Methods: To investigate whether alterations in BARD1 are involved in human breast and ovarian cancer, authors’ affiliations ....................... we used single strand conformation polymorphism analysis and sequencing on 35 breast tumours and cancer cell lines and on 21 ovarian tumours. Correspondence to: Results: Along with the G2355C (S761N) missense mutation previously identified in a uterine cancer, we Dr M K Sauer, Samuel Lunenfeld Research found two other variants in breast cancers, T2006C (C645R) and A2286G (I738V). The T2006C (C645R) Institute, Mount Sinai mutation was also found in one ovarian tumour. A variant of uncertain consequence, G1743C (C557S), Hospital, 600 University was found to be homozygous or hemizygous in an ovarian tumour. Eleven variants of BARD1 were Ave, Toronto, Ontario, M5G 1X5, Canada; characterised with respect to known functions of BARD1. None of the variants appears to affect [email protected] localisation or interaction with BRCA1; however, putative disease associated alleles appear to affect the stability of p53. These same mutations also appear to abrogate the growth suppressive and apoptotic Received activities of BARD1. -
Functional Characterization of Full-Length BARD1 Strengthens Its
Journal of Cancer 2020, Vol. 11 1495 Ivyspring International Publisher Journal of Cancer 2020; 11(6): 1495-1504. doi: 10.7150/jca.36164 Research Paper Functional characterization of full-length BARD1 strengthens its role as a tumor suppressor in neuroblastoma Flora Cimmino1,2, Marianna Avitabile1,2, Vito Alessandro Lasorsa1,2, Lucia Pezone1, Antonella Cardinale1, Annalaura Montella2, Sueva Cantalupo3, Achille Iolascon1,2, Mario Capasso1,2,3 1. Dipartimento di Medicina Molecolare e Biotecnologie Mediche, Università degli Studi di Napoli “Federico II”, Naples, Italy 2. CEINGE Biotecnologie Avanzate, Naples, Italy 3. IRCCS SDN, Naples, Italy Corresponding author: Flora Cimmino, phD, University of Naples Federico II, Department of Molecular Medicine and Medical Biotechnology, CEINGE Biotecnologie Avanzate, Via Gaetano Salvatore, 486, 80145 Napoli Italy. Lab: +39 0813737736; Fax: +39 0813737804; Email: [email protected] © The author(s). This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2019.04.29; Accepted: 2019.11.12; Published: 2020.01.14 Abstract BARD1 is associated with the development of high-risk neuroblastoma patients. Particularly, the expression of full length (FL) isoform, FL BARD1, correlates to high-risk neuroblastoma development and its inhibition is sufficient to induce neuroblastoma cells towards a worst phenotype. Here we have investigated the mechanisms of FL BARD1 in neuroblastoma cell lines depleted for FL BARD1 expression. We have shown that FL BARD1 expression protects the cells from spontaneous DNA damage and from damage accumulated after irradiation. We demonstrated a role for FL BARD1 as tumor suppressor to prevent unscheduled mitotic entry of DNA damaged cells and to lead to death cells that have bypassed cell cycle checkpoints. -
The Ethical Implications of Emerging Genetic Predictors of Poor Organ Transplant Outcomes
THE ETHICAL IMPLICATIONS OF EMERGING GENETIC PREDICTORS OF POOR ORGAN TRANSPLANT OUTCOMES by Michael Aloysius Freeman Bachelor of Arts, Siena College, 2004 Doctor of Medicine, Albany Medical College, 2008 Submitted to the Graduate Faculty of the Dietrich School of Arts and Sciences in partial fulfillment of the requirements for the degree of Master of Arts University of Pittsburgh 2016 UNIVERSITY OF PITTSBURGH DIETRICH SCHOOL OF ARTS AND SCIENCES This thesis was presented by Michael A Freeman It was defended on July 20th, 2016 and approved by Lisa S. Parker, Professor, Department of Human Genetics, University of Pittsburgh Mark R. Wicclair, Professor, Department of Philosophy, West Virginia University Benjamin E. Hippen, Associate Clinical Professor, Department of Medicine University of North Carolina at Chapel Hill Thesis Director: Lisa S. Parker, Professor, Department of Human Genetics ii Copyright © by Michael A Freeman 2016 iii THE ETHICAL IMPLICATIONS OF EMERGING GENETIC PREDICTORS OF POOR ORGAN TRANSPLANT OUTCOMES Michael A Freeman, MA, MD University of Pittsburgh, 2016 Abstract: Emerging research is beginning to identify genetic risk factors which may predict an increased likelihood of rejection following transplantation. The identification of these predictors prompt us to consider how we should incorporate this information into the process of transplant candidate evaluation and organ allocation, as well as the ethical implications of such incorporation. In order to ground this analysis, this thesis begins with an examination of how we consider other predictors of poor transplant outcomes currently, as interpreted in concordance with the US transplant system’s dual goals of efficacious and just organ allocation. It then proceeds with a brief summary of the current research on genetic predictors of poor transplant outcome, followed by a specific examination of the mechanisms by which these genes are investigated. -
Lessons Learned from BRCA1 and BRCA2
Oncogene (2000) 19, 6159 ± 6175 ã 2000 Macmillan Publishers Ltd All rights reserved 0950 ± 9232/00 $15.00 www.nature.com/onc Lessons learned from BRCA1 and BRCA2 Lei Zheng1, Shang Li1, Thomas G Boyer1 and Wen-Hwa Lee*,1 1Department of Molecular Medicine, Institute of Biotechnology, University of Texas Health Science Center at San Antonio, 15355 Lambda Drive, San Antonio, Texas, TX 78245, USA BRCA1 and BRCA2 are breast cancer susceptibility susceptibility genes has provided two human genetic genes. Mutations within BRCA1 and BRCA1 are models for studies of breast cancer. responsible for most familial breast cancer cases. To understand how the loss of BRCA1 or BRCA2 Targeted deletion of Brca1 or Brca2 in mice has function leads to breast cancer formation, mouse revealed an essential function for their encoded products, genetic models for BRCA1 or BRCA2 mutations have BRCA1 and BRCA2, in cell proliferation during been established. This work has revealed that Brca1 embryogenesis. Mouse models established from condi- homozygous deletions are lethal at early embryonic tional expression of mutant Brca1 alleles develop days (E)5.5 ± 13.5 (Gowen et al., 1996; Hakem et al., mammary gland tumors, providing compelling evidence 1996; Liu et al., 1996; Ludwig et al., 1997). Three that BRCA1 functions as a breast cancer suppressor. independent groups generated distinct mutations within Human cancer cells and mouse cells de®cient in BRCA1 Brca1, yet nonetheless observed similar embryonic or BRCA2 exhibit radiation hypersensitivity and phenotypes, including defects in both gastrulation and chromosomal abnormalities, thus revealing a potential cellular proliferation, and death at E6.5 (Hakem et al., role for both BRCA1 and BRCA2 in the maintenance of 1996; Liu et al., 1996; Ludwig et al., 1997). -
BRCC3 Mutations in Myeloid Neoplasms
Myeloid Malignancies SUPPLEMENTARY APPENDIX BRCC3 mutations in myeloid neoplasms Dayong Huang, 1,2 * Yasunobu Nagata, 3* Vera Grossmann, 4 Tomas Radivoyevitch, 5 Yusuke Okuno, 3 Genta Nagae, 6 Naoko Hosono, 2 Susanne Schnittger, 4 Masashi Sanada, 3 Bartlomiej Przychodzen, 2 Ayana Kon, 3 Chantana Polprasert, 2 Wenyi Shen, 2 Michael J. Clemente, 2 James G. Phillips, 2 Tamara Alpermann, 4 Kenichi Yoshida, 3 Niroshan Nadarajah, 4 7 Mikkael A. Sekeres, Kevin Oakley, 8 Nhu Nguyen, 8 Yuichi Shiraishi, 9 Yusuke Shiozawa, 3 Kenichi Chiba, 9 Hiroko Tanaka, 10 H. Phillip Koeffler, 11,12 Hans-Ulrich Klein, 13 Martin Dugas, 13 Hiroyuki Aburatani, 6 Satoru Miyano, 9,10 Claudia Haferlach, 4 Wolfgang Kern, 4 Torsten Haferlach, 4 Yang Du, 8 Seishi Ogawa, 3 and Hideki Makishima 2,3 1Department of Hematology, Beijing Friendship Hospital, Capital Medical University, Beijing, China; 2Department of Translational Hema - tology and Oncology Research, Taussig Cancer Institute, Cleveland Clinic, Cleveland, OH, USA; 3Department of Pathology and Tumor Biol - ogy, Kyoto University, Japan; 4Munich Leukemia Laboratory (MLL), Germany; 5Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic, OH, USA; 6Genome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Japan; 7Leukemia Program, Taussig Cancer Institute, Cleveland Clinic, OH, USA; 8Department of Pediatrics, Uni - formed Services University of the Health Sciences, Bethesda, MD, USA; 9Laboratory of DNA Information Analysis, Human Genome Cen - ter, Institute of Medical Science, The University of Tokyo, Japan; 10 Laboratory of Sequence Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Japan; 11 Department of Hematology/Oncology, Cedars-Sinai Medical Center, Los Angeles, CA, USA; 12 Cancer Science Institute of Singapore, National University of Singapore; and 13 Institute of Medical Informatics, University of Mün - ster, Germany *DH and YN contributed equally to this work.