Doctoral Dissertation Template
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UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE A REVIEW OF THE APPLICATION OF DATABASES IN FRESHWATER FISHERIES MANAGEMENT AND THE EFFECT OF WATER QUALITY ON THE MEAN RELATIVE WEIGHT OF LARGEMOUTH BASS, CRAPPIE, AND CHANNEL CATFISH IN OKLAHOMA LAKES A THESIS SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of MASTER OF SCIENCE IN GEOGRAPHY By AUSTIN GRIFFIN Norman, Oklahoma 2018 A REVIEW OF THE APPLICATION OF DATABASES IN FRESHWATER FISHERIES MANAGEMENT AND THE EFFECT OF WATER QUALITY ON THE MEAN RELATIVE WEIGHT OF LARGEMOUTH BASS, CRAPPIE, AND CHANNEL CATFISH IN OKLAHOMA LAKES A THESIS APPROVED FOR THE DEPARTMENT OF GEOGRAPHY AND ENVIRONMENTAL SUSTAINABILITY BY ______________________________ Dr. Bruce Hoagland, Chair ______________________________ Dr. Rebecca Loraamm ______________________________ Dr. Thomas Neeson © Copyright by AUSTIN GRIFFIN 2018 All Rights Reserved. Acknowledgements I would like to thank my advisor Dr. Bruce Hoagland for his advice and guidance throughout my time at OU. His willingness to educate and work with someone who had little to no experience in database development is much appreciated. I would also like to thank Kurt Kuklinski of the Oklahoma Department of Wildlife Conservation (ODWC) as well as everyone else who works at the Oklahoma Fisheries Research Lab. Not only for their help and guidance in the development of this project, but also for their willingness to get me out in the field. I would also like to say thank you to everyone at the Oklahoma Biological Survey as well as my other committee members, Dr. Rebecca Loraamm and Dr. Thomas Neeson, for their advice and input in the development of this project. I would like to let my wife Courtney know how much her patience and support has been appreciated throughout this entire process, as well as for giving me a wonderful baby girl right in the middle of it! Lastly, I’d like to thank my parents for their unfailing love and support, and my father in particular for exposing me to the outdoors and putting me on the career path that I have chosen. iv Table of Contents Acknowledgements ......................................................................................................... iv List of Tables .................................................................................................................. vii List of Figures ................................................................................................................ viii Abstract ............................................................................................................................ ix Chapter 1: Introduction ..................................................................................................... 1 Legacy Data Sources .................................................................................................. 2 The Value of Databases in Fisheries .......................................................................... 3 International Databases ........................................................................................ 3 National and Interstate Databases ........................................................................ 5 State Databases ..................................................................................................... 7 Local Knowledge .................................................................................................. 8 Database Creation, Manipulation, and Maintenance .................................................. 9 Geospatial Databases ............................................................................................ 9 Issues to Address ................................................................................................ 11 Quality Assurance and Quality Control ............................................................. 12 SSP Database Creation ....................................................................................... 14 Conclusion ................................................................................................................ 17 References ................................................................................................................ 19 Chapter 2: Introduction .................................................................................................. 33 Methods .................................................................................................................... 37 Study Area .......................................................................................................... 37 Data Sources and Analysis ................................................................................. 38 v Results and Discussion ............................................................................................. 42 Conclusion ................................................................................................................ 46 References ................................................................................................................ 48 Appendices .................................................................................................................... 69 Appendix A .............................................................................................................. 69 Appendix B ............................................................................................................... 72 vi List of Tables Chapter 1 Table 1. State agency and university websites that provide fisheries information......... 26 Table 2. Metadata information regarding the Standard Sampling Protocol database .... 28 Chapter 2 Table 1. Water body name, code, and the most recent year in which it was sampled for the Oklahoma Water Resources Board’s lakes Beneficial Use Monitoring Program ... 54 Table 2. Confusion and cross-validation matrix totals showing the percent correct classified observations for each type of Discriminant Analysis by class ....................... 57 Table 3. Summary statistics for the relative weights of each study species according to the discriminant analysis classifications for 108 water bodies ....................................... 58 Table 4. Summary statistics for each water quality parameter according to the discriminant analysis classifications for 108 water bodies ............................................. 59 Table 5. Type III Sum of Squares p-values for each water quality parameter by species. Significant values are listed bold .................................................................................... 60 vii List of Figures Chapter 1 Figure 1. Standard Sampling Protocol Database schema ............................................... 32 Chapter 2 Figure 1. Salinity (a) and pH (b) range and location of study lakes adapted from the Beneficial Use Monitoring Program Nutrient Status figure in Lakes of Oklahoma ........................................................................................................................................ 61 Figure 2. Scree plot showing the k-means clustering within-class variance and illustrating the elbow at 6 classes ................................................................................... 62 Figure 3. Ordination diagrams depicting results for the standard, forward stepwise, and backward stepwise discriminant analysis of water quality variables ............................. 63 Figure 4a. Box and whisker plots for each water quality parameter according to discriminant analysis classes .......................................................................................... 64 Figure 4b. Box and whisker plots for each water quality parameter according to discriminant analysis classes .......................................................................................... 65 Figure 5. Water body class centroids and clusters with respect to axes 1 and 2 ........................................................................................................................................ 66 Figure 6. Discriminant analysis classification of 108 Oklahoma water bodies ........................................................................................................................................ 67 Figure 7. Predicted relative weights of each fish compared to the observed relative weights ............................................................................................................................ 68 viii Abstract The subject of this thesis is the development and use of databases for use in fisheries management. The thesis consists of two chapters. The first is a literature review of fisheries databases and an overview of my work as a graduate research assistant with the Oklahoma Biological Survey and Oklahoma Fisheries Research Laboratory (OFRL) of the Oklahoma Department of Wildlife Conservation. The Standard Sampling Protocol (SSP) is at the core of both chapters. In chapter 1, I reviewed the fisheries database literature to aid in the development of the SSP Database and emphasize some of the issues that commonly occur with database development and application. This information guided me in the development of a relational database for the SSP data. The resulting database includes approximately 1.6 million records for 150 fish species in Oklahoma. The database schema consists of five tables: Abiotic, Biotic, SSP Species List, OBIS Taxonomy, and OWRB Lake Data. Chapter 2 employed the SSP database to determine