The AWK Programming Language
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At—At, Batch—Execute Commands at a Later Time
at—at, batch—execute commands at a later time at [–csm] [–f script] [–qqueue] time [date] [+ increment] at –l [ job...] at –r job... batch at and batch read commands from standard input to be executed at a later time. at allows you to specify when the commands should be executed, while jobs queued with batch will execute when system load level permits. Executes commands read from stdin or a file at some later time. Unless redirected, the output is mailed to the user. Example A.1 1 at 6:30am Dec 12 < program 2 at noon tomorrow < program 3 at 1945 pm August 9 < program 4 at now + 3 hours < program 5 at 8:30am Jan 4 < program 6 at -r 83883555320.a EXPLANATION 1. At 6:30 in the morning on December 12th, start the job. 2. At noon tomorrow start the job. 3. At 7:45 in the evening on August 9th, start the job. 4. In three hours start the job. 5. At 8:30 in the morning of January 4th, start the job. 6. Removes previously scheduled job 83883555320.a. awk—pattern scanning and processing language awk [ –fprogram–file ] [ –Fc ] [ prog ] [ parameters ] [ filename...] awk scans each input filename for lines that match any of a set of patterns specified in prog. Example A.2 1 awk '{print $1, $2}' file 2 awk '/John/{print $3, $4}' file 3 awk -F: '{print $3}' /etc/passwd 4 date | awk '{print $6}' EXPLANATION 1. Prints the first two fields of file where fields are separated by whitespace. 2. Prints fields 3 and 4 if the pattern John is found. -
Sequence Listings Webinar Suzannah K. Sundby Carl Oppedahl
Suzannah K. Sundby Canady + Lortz LLP Sequence Listings Webinar January 9, 2018 – Updated Version Carl Oppedahl Oppedahl Patent Law Firm LLC DISCLAIMER These materials and views expressed today reflect only the personal views of the author and do not necessarily represent the views of other members and clients of the author’s organizations. These materials are public information and have been prepared solely for educational purposes to contribute to the understanding of U.S. intellectual property law. While every attempt was made to ensure that these materials are accurate, errors or omissions may be contained therein, for which any liability is disclaimed. These materials and views are not a source of legal advice and do not establish any form of attorney-client relationship with the authors and their law firms. Why are some sequence errors not identified by Checker? Is “SEQ ID NO” required before sequences in Specifications? Do you recommend using the PatentIn Software? How do you correct sequence listing errors in PCTs? What about the new WIPO ST.26 Standard? Is Checker worthwhile? How can I easily edit sequence listings generated by others? Can I use other software to generate sequence listings? How do I file sequence listings using EFS-Web and ePCT? How long does it take the USPTO to review and approve? Any risk TYFNIL of using certain sequence descriptors? Help! IT locked down my computer… what do I do? Any sequence listing tips? Why Practitioners Should Know and Do Usually lack of time to send to outside vendors Last minute changes to applications (apps) containing sequences (seqs) Particularly, changes to claims Not hostage to staff/vendors, overtime, etc. -
DC Console Using DC Console Application Design Software
DC Console Using DC Console Application Design Software DC Console is easy-to-use, application design software developed specifically to work in conjunction with AML’s DC Suite. Create. Distribute. Collect. Every LDX10 handheld computer comes with DC Suite, which includes seven (7) pre-developed applications for common data collection tasks. Now LDX10 users can use DC Console to modify these applications, or create their own from scratch. AML 800.648.4452 Made in USA www.amltd.com Introduction This document briefly covers how to use DC Console and the features and settings. Be sure to read this document in its entirety before attempting to use AML’s DC Console with a DC Suite compatible device. What is the difference between an “App” and a “Suite”? “Apps” are single applications running on the device used to collect and store data. In most cases, multiple apps would be utilized to handle various operations. For example, the ‘Item_Quantity’ app is one of the most widely used apps and the most direct means to take a basic inventory count, it produces a data file showing what items are in stock, the relative quantities, and requires minimal input from the mobile worker(s). Other operations will require additional input, for example, if you also need to know the specific location for each item in inventory, the ‘Item_Lot_Quantity’ app would be a better fit. Apps can be used in a variety of ways and provide the LDX10 the flexibility to handle virtually any data collection operation. “Suite” files are simply collections of individual apps. Suite files allow you to easily manage and edit multiple apps from within a single ‘store-house’ file and provide an effortless means for device deployment. -
UNIX Commands
UNIX commands ls list the contents of a directory ls -l list the content of a directory with more details mkdir <directory> create the directory <directory> cd <directory> change to the directory <directory> cd .. move back one directory cp <file1> <file2> copy the file <file1> into <file2> mv <file1> <file2> move the file <file1> to <file2> rm <file> remove the file <file> rmdir <directory> delete the directory <directory> man <command> display the manual page for <command> module load netcdf load the netcdf commands to use module load ferret load ferret module load name load the module “name” to use its commands vi <file> read the content of the file <file> vimdiff <file1> <file2> show the differences between files <file1> and <file2> pwd show current directory tar –czvf file.tar.gz file compress one or multiple files into file.tar.gz tar –xzvf file.tar.gz extract the compressed file file.tar.gz ./name execute the executable called name qsub scriptname submits a script to the queuing system qdel # cancel the submitted job number # from the queue qstat show queued jobs qstat –u zName show only your queued jobs Inside vi ESC, then :q! Quit without saving ESC, then :wq Quit with saving ESC, then i Get in insert mode to edit text ESC, then /word Search content for word ESC, then :% Go to end of document ESC, then :0 Go to beginning of document ESC, then :set nu Add line numbers ESC, then :# Go to line number # N.B.: If inside vimdiff, you have 2 files opened, so you need to quit vi twice. -
The Ifplatform Package
The ifplatform package Original code by Johannes Große Package by Will Robertson http://github.com/wspr/ifplatform v0.4a∗ 2017/10/13 1 Main features and usage This package provides the three following conditionals to test which operating system is being used to run TEX: \ifwindows \iflinux \ifmacosx \ifcygwin If you only wish to detect \ifwindows, then it does not matter how you load this package. Note then that use of (Linux or Mac OS X or Cygwin) can then be detected with \ifwindows\else. If you also wish to determine the difference between which Unix-variant you are using (i.e., also detect \iflinux, \ifmacosx, and \ifcygwin) then shell escape must be enabled. This is achieved by using the -shell-escape command line option when executing LATEX. If shell escape is not enabled, \iflinux, \ifmacosx, and \ifcygwin will all return false. A warning will be printed in the console output to remind you in this case. ∗Thanks to Ken Brown, Joseph Wright, Zebb Prime, and others for testing this package. 1 2 Auxiliary features \ifshellescape is provided as a conditional to test whether shell escape is active or not. (Note: new versions of pdfTEX allow you to query shell escape with \ifnum\pdfshellescape>0 , and the pdftexcmds package provides the wrapper \pdf@shellescape which works with X TE EX, pdfTEX, and LuaTEX.) Also, the \platformname command is defined to expand to a macro that represents the operating system. Default definitions are (respectively): \windowsname ! ‘Windows’ \notwindowsname ! ‘*NIX’ (when shell escape is disabled) \linuxname ! ‘Linux’ \macosxname ! ‘Mac OS X’ \cygwinname ! ‘Cygwin’ \unknownplatform ! whatever is returned by uname E.g., if \ifwindows is true then \platformname expands to \windowsname, which expands to ‘Windows’. -
Buffer Overflow Exploits
Buffer overflow exploits EJ Jung A Bit of History: Morris Worm Worm was released in 1988 by Robert Morris • Graduate student at Cornell, son of NSA chief scientist • Convicted under Computer Fraud and Abuse Act, sentenced to 3 years of probation and 400 hours of community service • Now a computer science professor at MIT Worm was intended to propagate slowly and harmlessly measure the size of the Internet Due to a coding error, it created new copies as fast as it could and overloaded infected machines $10-100M worth of damage Morris Worm and Buffer Overflow One of the worm’s propagation techniques was a buffer overflow attack against a vulnerable version of fingerd on VAX systems • By sending special string to finger daemon, worm caused it to execute code creating a new worm copy • Unable to determine remote OS version, worm also attacked fingerd on Suns running BSD, causing them to crash (instead of spawning a new copy) For more history: • http://www.snowplow.org/tom/worm/worm.html Buffer Overflow These Days Most common cause of Internet attacks • Over 50% of advisories published by CERT (computer security incident report team) are caused by various buffer overflows Morris worm (1988): overflow in fingerd • 6,000 machines infected CodeRed (2001): overflow in MS-IIS server • 300,000 machines infected in 14 hours SQL Slammer (2003): overflow in MS-SQL server • 75,000 machines infected in 10 minutes (!!) Attacks on Memory Buffers Buffer is a data storage area inside computer memory (stack or heap) • Intended to hold pre-defined -
Practical C Programming, 3Rd Edition
Practical C Programming, 3rd Edition By Steve Oualline 3rd Edition August 1997 ISBN: 1-56592-306-5 This new edition of "Practical C Programming" teaches users not only the mechanics or programming, but also how to create programs that are easy to read, maintain, and debug. It features more extensive examples and an introduction to graphical development environments. Programs conform to ANSI C. 0 TEAM FLY PRESENTS Table of Contents Preface How This Book is Organized Chapter by Chapter Notes on the Third Edition Font Conventions Obtaining Source Code Comments and Questions Acknowledgments Acknowledgments to the Third Edition I. Basics 1. What Is C? How Programming Works Brief History of C How C Works How to Learn C 2. Basics of Program Writing Programs from Conception to Execution Creating a Real Program Creating a Program Using a Command-Line Compiler Creating a Program Using an Integrated Development Environment Getting Help on UNIX Getting Help in an Integrated Development Environment IDE Cookbooks Programming Exercises 3. Style Common Coding Practices Coding Religion Indentation and Code Format Clarity Simplicity Summary 4. Basic Declarations and Expressions Elements of a Program Basic Program Structure Simple Expressions Variables and Storage 1 TEAM FLY PRESENTS Variable Declarations Integers Assignment Statements printf Function Floating Point Floating Point Versus Integer Divide Characters Answers Programming Exercises 5. Arrays, Qualifiers, and Reading Numbers Arrays Strings Reading Strings Multidimensional Arrays Reading Numbers Initializing Variables Types of Integers Types of Floats Constant Declarations Hexadecimal and Octal Constants Operators for Performing Shortcuts Side Effects ++x or x++ More Side-Effect Problems Answers Programming Exercises 6. -
Process Text Streams Using Filters
Process Text Streams Using Filters OBJECTIVE: Candidates should should be able to apply filters to text streams. 1 Process Text Streams Using Filters KeyKEY knowledge KNOWLEDGE area(s): AREAS: Send text files and output streams through text utility filters to modify the output using standard UNIX commands found in the GNU textutils package. 2 Process Text Streams Using Filters KEY FILES,TERMS, UTILITIES cat nl tail cut paste tr expand pr unexpand fmt sed uniq head sort wc hexdump split join tac 3 cat cat the editor - used as a rudimentary text editor. cat > short-message we are curious to meet penguins in Prague Crtl+D *Ctrl+D - command is used for ending interactive input. 4 cat cat the reader More commonly used to flush text to stdout. Options: -n number each line of output -b number only non-blank output lines -A show carriage return Example cat /etc/resolv.conf ▶ search mydomain.org nameserver 127.0.0.1 5 tac tac reads back-to-front This command is the same as cat except that the text is read from the last line to the first. tac short-message ▶ penguins in Prague to meet we are curious 6 head or tail using head or tail - often used to analyze logfiles. - by default, output 10 lines of text. List 20 first lines of /var/log/messages: head -n 20 /var/log/messages head -20 /var/log/messages List 20 last lines of /etc/aliases: tail -20 /etc/aliases 7 head or tail The tail utility has an added option that allows one to list the end of a text starting at a given line. -
Reasoning About Programs Need: Definition of Works/Correct: a Specification (And Bugs) but Programs Fail All the Time
Good programs, broken programs? Goal: program works (does not fail) Reasoning about Programs Need: definition of works/correct: a specification (and bugs) But programs fail all the time. Why? A brief interlude on 1. Misuse of your code: caller did not meet assumptions specifications, assertions, and debugging 2. Errors in your code: mistake causes wrong computation 3. Unpredictable external problems: • Out of memory, missing file, network down, … • Plan for these problems, fail gracefully. 4. Wrong or ambiguous specification, implemented correctly Largely based on material from University of Washington CSE 331 A Bug's Life, ca. 1947 A Bug's Life Defect: a mistake in the code Think 10 per 1000 lines of industry code. We're human. -- Grace Hopper Error: incorrect computation Because of defect, but not guaranteed to be visible Failure: observable error -- program violates its specification Crash, wrong output, unresponsive, corrupt data, etc. Time / code distance between stages varies: • tiny (<second to minutes / one line of code) • or enormous (years to decades to never / millons of lines of code) "How to build correct code" Testing 1. Design and Verify Make correctness more likely or provable from the start. • Can show that a program has an error. 2. Program Defensively • Can show a point where an error causes a failure. Plan for defects and errors. • Cannot show the error that caused the failure. • make testing more likely to reveal errors as failures • Cannot show the defect that caused the error. • make debugging failures easier 3. Test and Validate Try to cause failures. • Can improve confidence that the sorts of errors/failures • provide evidence of defects/errors targeted by the tests are less likely in programs similar • or increase confidence of their absence to the tests. -
A Brief Introduction to Unix-2019-AMS
Brief Intro to Linux/Unix Brief Intro to Unix (contd) A Brief Introduction to o Brief History of Unix o Compilers, Email, Text processing o Basics of a Unix session o Image Processing Linux/Unix – AMS 2019 o The Unix File System Pete Pokrandt o Working with Files and Directories o The vi editor UW-Madison AOS Systems Administrator o Your Environment [email protected] o Common Commands Twitter @PTH1 History of Unix History of Unix History of Unix o Created in 1969 by Kenneth Thompson and Dennis o Today – two main variants, but blended o It’s been around for a long time Ritchie at AT&T o Revised in-house until first public release 1977 o System V (Sun Solaris, SGI, Dec OSF1, AIX, o It was written by computer programmers for o 1977 – UC-Berkeley – Berkeley Software Distribution (BSD) linux) computer programmers o 1983 – Sun Workstations produced a Unix Workstation o BSD (Old SunOS, linux, Mac OSX/MacOS) o Case sensitive, mostly lowercase o AT&T unix -> System V abbreviations 1 Basics of a Unix Login Session Basics of a Unix Login Session Basics of a Unix Login Session o The Shell – the command line interface, o Features provided by the shell o Logging in to a unix session where you enter commands, etc n Create an environment that meets your needs n login: username n Some common shells n Write shell scripts (batch files) n password: tImpAw$ n Define command aliases (this Is my password At work $) Bourne Shell (sh) OR n Manipulate command history IHateHaving2changeMypasswordevery3weeks!!! C Shell (csh) n Automatically complete the command -
CRN What It Was Doing and Why It Was Cognitive Systems Vision Doing It, and to Recover from Mental Continued on Page 8 Expanding the Pipeline
COMPUTING RESEARCH NEWS Computing Research Association, Celebrating 30 Years of Service to the Computing Research Community November 2002 Vol. 14/No. 5 DARPA’s New Cognitive Systems Vision By Ron Brachman and IPTO’s goal is to create a new to cope with systems both keep Zachary Lemnios generation of cognitive systems. growing. In order to make our systems more reliable, more secure, The impact of the Defense Mired in Moore’s Law? and more understandable, and to Advanced Research Projects Agency One benefit of such cognitive continue making substantial contri- (DARPA) on computing over the systems would be their help in butions to society, we need to do past 40 years has been profound. Led extracting us from a corner into something dramatically different. by the visionary J.C.R. Licklider and which our success seems to have his innovative successors in the painted us. The research that has The Promise of Cognitive Information Processing Techniques helped the industry follow Moore’s Systems Office (IPTO), DARPA initiated “Law” has created processors that are IPTO is attacking this problem by work that ultimately put personal remarkably fast and small, and data driving a fundamental change in computers on millions of desktops storage capabilities that are vast and computing systems. By giving systems Ron Brachman and made the global Internet a cheap. Unfortunately, these incred- more cognitive capabilities, we reality. In fact, the original IPTO, ible developments have cut two ways. believe we can make them more which lasted from 1962 to 1985, was While today’s computers are more responsible for their own behavior in large part responsible for estab- powerful than ever, we have been and maintenance. -
Unix/Linux Command Reference
Unix/Linux Command Reference .com File Commands System Info ls – directory listing date – show the current date and time ls -al – formatted listing with hidden files cal – show this month's calendar cd dir - change directory to dir uptime – show current uptime cd – change to home w – display who is online pwd – show current directory whoami – who you are logged in as mkdir dir – create a directory dir finger user – display information about user rm file – delete file uname -a – show kernel information rm -r dir – delete directory dir cat /proc/cpuinfo – cpu information rm -f file – force remove file cat /proc/meminfo – memory information rm -rf dir – force remove directory dir * man command – show the manual for command cp file1 file2 – copy file1 to file2 df – show disk usage cp -r dir1 dir2 – copy dir1 to dir2; create dir2 if it du – show directory space usage doesn't exist free – show memory and swap usage mv file1 file2 – rename or move file1 to file2 whereis app – show possible locations of app if file2 is an existing directory, moves file1 into which app – show which app will be run by default directory file2 ln -s file link – create symbolic link link to file Compression touch file – create or update file tar cf file.tar files – create a tar named cat > file – places standard input into file file.tar containing files more file – output the contents of file tar xf file.tar – extract the files from file.tar head file – output the first 10 lines of file tar czf file.tar.gz files – create a tar with tail file – output the last 10 lines