Voltage Clamp Analysis of Sodium Channels in Normal and Scorpion Toxin-Resistant Neuroblastoma Cells
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Introduction to Unix
Introduction to Unix Rob Funk <[email protected]> University Technology Services Workstation Support http://wks.uts.ohio-state.edu/ University Technology Services Course Objectives • basic background in Unix structure • knowledge of getting started • directory navigation and control • file maintenance and display commands • shells • Unix features • text processing University Technology Services Course Objectives Useful commands • working with files • system resources • printing • vi editor University Technology Services In the Introduction to UNIX document 3 • shell programming • Unix command summary tables • short Unix bibliography (also see web site) We will not, however, be covering these topics in the lecture. Numbers on slides indicate page number in book. University Technology Services History of Unix 7–8 1960s multics project (MIT, GE, AT&T) 1970s AT&T Bell Labs 1970s/80s UC Berkeley 1980s DOS imitated many Unix ideas Commercial Unix fragmentation GNU Project 1990s Linux now Unix is widespread and available from many sources, both free and commercial University Technology Services Unix Systems 7–8 SunOS/Solaris Sun Microsystems Digital Unix (Tru64) Digital/Compaq HP-UX Hewlett Packard Irix SGI UNICOS Cray NetBSD, FreeBSD UC Berkeley / the Net Linux Linus Torvalds / the Net University Technology Services Unix Philosophy • Multiuser / Multitasking • Toolbox approach • Flexibility / Freedom • Conciseness • Everything is a file • File system has places, processes have life • Designed by programmers for programmers University Technology Services -
An Improved Voltage Clamp Circuit Suitable for Accurate Measurement of the Conduction Loss of Power Electronic Devices
sensors Article An Improved Voltage Clamp Circuit Suitable for Accurate Measurement of the Conduction Loss of Power Electronic Devices Qiuping Yu, Zhibin Zhao *, Peng Sun, Bin Zhao and Yumeng Cai State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, North China Electric Power University, Beijing 102206, China; [email protected] (Q.Y.); [email protected] (P.S.); [email protected] (B.Z.); [email protected] (Y.C.) * Correspondence: [email protected] Abstract: Power electronic devices are essential components of high-capacity industrial converters. Accurate assessment of their power loss, including switching loss and conduction loss, is essential to improving electrothermal stability. To accurately calculate the conduction loss, a drain–source voltage clamp circuit is required to measure the on-state voltage. In this paper, the conventional drain–source voltage clamp circuit based on a transistor is comprehensively investigated by theoretical analysis, simulations, and experiments. It is demonstrated that the anti-parallel diodes and the gate-shunt capacitance of the conventional drain–source voltage clamp circuit have adverse impacts on the accuracy and security of the conduction loss measurement. Based on the above analysis, an improved drain–source voltage clamp circuit, derived from the conventional drain–source voltage clamp circuit, is proposed to solve the above problems. The operational advantages, physical structure, and design guidelines of the improved circuit are fully presented. In addition, to evaluate the influence of component parameters on circuit performance, this article comprehensively extracts three electrical Citation: Yu, Q.; Zhao, Z.; Sun, P.; quantities as judgment indicators. Based on the working mechanism of the improved circuit and Zhao, B.; Cai, Y. -
Lecture 1: an Introduction to Plasticity and Cellular Electrophysiology
Lecture 1: An Introduction To Plasticity and Cellular Electrophysiology MCP 2003 Charge separation across a ATPase + semipermeable Ca++ 3Na ATPase membrane is the 2K+ (mM) basis of excitability. K+ = 140 + Na = 7 ++ + Ca Cl- = 7 3Na (mM) Ca++ = 1 x 10-4 co-transporter K+ =3 Na+ = 140 membrane pores Cl- = 140 with variable Ca++ = 1.5 permeability - + R - + m Cm gK+ gCl- gNa++ Convention: Current direction is defined by the direction of increasing positive charge. Na++ flux into a cell is an inward current. K+ flux out of a cell is an outward current. Cl- flux into a cell is an outward current. A depolarizing current is a net influx of + ions or a net efflux of negative ions. A hyperpolarizing current is a net efflux of + ions or a net influx of negative ions. I Outward rectification: when a membrane allows outward current (net + charge out) V to flow more easily than and inward current. Outward rectification I Inward rectification: when a membrane allows inward current to flow more easily V than an outward current. Inward rectification Methods of Measuring Function In Excitable Membranes Field potentials: measure current sources _ low pass filter and sinks from populations of neurons + across the electrode resistance. _ 0 Brain mV-V - t (sec) + Microelectrode extracellular recording: measures action potentials from a small _ number of neurons. 0 mV pulse amplitude window - Intracellular recording: can measure voltage, t (msec) band pass filter 1KHz-10KHz +40 0 Voltage clamp recording: resting membrane Can pass current to compensate -60 potential for voltage change. In this way voltage is held ~ constant and current applied to _ compensate is a measure of the current flowing. -
Bedtools Documentation Release 2.30.0
Bedtools Documentation Release 2.30.0 Quinlan lab @ Univ. of Utah Jan 23, 2021 Contents 1 Tutorial 3 2 Important notes 5 3 Interesting Usage Examples 7 4 Table of contents 9 5 Performance 169 6 Brief example 173 7 License 175 8 Acknowledgments 177 9 Mailing list 179 i ii Bedtools Documentation, Release 2.30.0 Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line. bedtools is developed in the Quinlan laboratory at the University of Utah and benefits from fantastic contributions made by scientists worldwide. Contents 1 Bedtools Documentation, Release 2.30.0 2 Contents CHAPTER 1 Tutorial We have developed a fairly comprehensive tutorial that demonstrates both the basics, as well as some more advanced examples of how bedtools can help you in your research. Please have a look. 3 Bedtools Documentation, Release 2.30.0 4 Chapter 1. Tutorial CHAPTER 2 Important notes • As of version 2.28.0, bedtools now supports the CRAM format via the use of htslib. Specify the reference genome associated with your CRAM file via the CRAM_REFERENCE environment variable. -
07 07 Unixintropart2 Lucio Week 3
Unix Basics Command line tools Daniel Lucio Overview • Where to use it? • Command syntax • What are commands? • Where to get help? • Standard streams(stdin, stdout, stderr) • Pipelines (Power of combining commands) • Redirection • More Information Introduction to Unix Where to use it? • Login to a Unix system like ’kraken’ or any other NICS/ UT/XSEDE resource. • Download and boot from a Linux LiveCD either from a CD/DVD or USB drive. • http://www.puppylinux.com/ • http://www.knopper.net/knoppix/index-en.html • http://www.ubuntu.com/ Introduction to Unix Where to use it? • Install Cygwin: a collection of tools which provide a Linux look and feel environment for Windows. • http://cygwin.com/index.html • https://newton.utk.edu/bin/view/Main/Workshop0InstallingCygwin • Online terminal emulator • http://bellard.org/jslinux/ • http://cb.vu/ • http://simpleshell.com/ Introduction to Unix Command syntax $ command [<options>] [<file> | <argument> ...] Example: cp [-R [-H | -L | -P]] [-fi | -n] [-apvX] source_file target_file Introduction to Unix What are commands? • An executable program (date) • A command built into the shell itself (cd) • A shell program/function • An alias Introduction to Unix Bash commands (Linux) alias! crontab! false! if! mknod! ram! strace! unshar! apropos! csplit! fdformat! ifconfig! more! rcp! su! until! apt-get! cut! fdisk! ifdown! mount! read! sudo! uptime! aptitude! date! fg! ifup! mtools! readarray! sum! useradd! aspell! dc! fgrep! import! mtr! readonly! suspend! userdel! awk! dd! file! install! mv! reboot! symlink! -
Roof Rail Airbag Folding Technique in LS-Prepost ® Using Dynfold Option
14th International LS-DYNA Users Conference Session: Modeling Roof Rail Airbag Folding Technique in LS-PrePost® Using DynFold Option Vijay Chidamber Deshpande GM India – Tech Center Wenyu Lian General Motors Company, Warren Tech Center Amit Nair Livermore Software Technology Corporation Abstract A requirement to reduce vehicle development timelines is making engineers strive to limit lead times in analytical simulations. Airbags play a crucial role in the passive safety crash analysis. Hence they need to be designed, developed and folded for CAE applications within a short span of time. Therefore a method/procedure to fold the airbag efficiently is of utmost importance. In this study the RRAB (Roof Rail AirBag) folding is carried out in LS-PrePost® by DynFold option. It is purely a simulation based folding technique, which can be solved in LS-DYNA®. In this paper we discuss in detail the RRAB folding process and tools/methods to make this effective. The objective here is to fold the RRAB to include modifications in the RRAB, efficiently and realistically using common analysis tools ( LS-DYNA & LS-PrePost), without exploring a third party tool , thus reducing the turnaround time. Introduction To meet the regulatory and consumer metrics requirements, multiple design iterations are required using advanced CAE simulation models for the various safety load cases. One of the components that requires frequent changes is the roof rail airbag (RRAB). After any changes to the geometry or pattern in the airbag have been made, the airbag needs to be folded back to its design position. Airbag folding is available in a few pre-processors; however, there are some folding patterns that are difficult to be folded using the pre-processor folding modules. -
Unix Programmer's Manual
There is no warranty of merchantability nor any warranty of fitness for a particu!ar purpose nor any other warranty, either expressed or imp!ied, a’s to the accuracy of the enclosed m~=:crials or a~ Io ~helr ,~.ui~::~::.j!it’/ for ~ny p~rficu~ar pur~.~o~e. ~".-~--, ....-.re: " n~ I T~ ~hone Laaorator es 8ssumg$ no rO, p::::nS,-,,.:~:y ~or their use by the recipient. Furln=,, [: ’ La:::.c:,:e?o:,os ~:’urnes no ob~ja~tjon ~o furnish 6ny a~o,~,,..n~e at ~ny k:nd v,,hetsoever, or to furnish any additional jnformstjcn or documenta’tjon. UNIX PROGRAMMER’S MANUAL F~ifth ~ K. Thompson D. M. Ritchie June, 1974 Copyright:.©d972, 1973, 1974 Bell Telephone:Laboratories, Incorporated Copyright © 1972, 1973, 1974 Bell Telephone Laboratories, Incorporated This manual was set by a Graphic Systems photo- typesetter driven by the troff formatting program operating under the UNIX system. The text of the manual was prepared using the ed text editor. PREFACE to the Fifth Edition . The number of UNIX installations is now above 50, and many more are expected. None of these has exactly the same complement of hardware or software. Therefore, at any particular installa- tion, it is quite possible that this manual will give inappropriate information. The authors are grateful to L. L. Cherry, L. A. Dimino, R. C. Haight, S. C. Johnson, B. W. Ker- nighan, M. E. Lesk, and E. N. Pinson for their contributions to the system software, and to L. E. McMahon for software and for his contributions to this manual. -
Counting Mountain-Valley Assignments for Flat Folds
Counting Mountain-Valley Assignments for Flat Folds∗ Thomas Hull Department of Mathematics Merrimack College North Andover, MA 01845 Abstract We develop a combinatorial model of paperfolding for the pur- poses of enumeration. A planar embedding of a graph is called a crease pattern if it represents the crease lines needed to fold a piece of paper into something. A flat fold is a crease pattern which lies flat when folded, i.e. can be pressed in a book without crumpling. Given a crease pattern C =(V,E), a mountain-valley (MV) assignment is a function f : E → {M,V} which indicates which crease lines are con- vex and which are concave, respectively. A MV assignment is valid if it doesn’t force the paper to self-intersect when folded. We examine the problem of counting the number of valid MV assignments for a given crease pattern. In particular we develop recursive functions that count the number of valid MV assignments for flat vertex folds, crease patterns with only one vertex in the interior of the paper. We also provide examples, especially those of Justin, that illustrate the difficulty of the general multivertex case. 1 Introduction The study of origami, the art and process of paperfolding, includes many arXiv:1410.5022v1 [math.CO] 19 Oct 2014 interesting geometric and combinatorial problems. (See [3] and [6] for more background.) In origami mathematics, a fold refers to any folded paper object, independent of the number of folds done in sequence. The crease pattern of a fold is a planar embedding of a graph which represents the creases that are used in the final folded object. -
Recording Techniques
Electrophysiological Recording Techniques Wen-Jun Gao, PH.D. Drexel University College of Medicine Goal of Physiological Recording To detect the communication signals between neurons in real time (μs to hours) • Current clamp – measure membrane potential, PSPs, action potentials, resting membrane potential • Voltage clamp – measure membrane current, PSCs, voltage-ligand activated conductances 1 Current is conserved at a branch point A Typical Electrical Circuit Example of an electrical circuit with various parts. Current always flows in a complete circuit. 2 Resistors and Conductors Summation of Conductance: Conductances in parallel summate together, whether they are resistors or channels. Ohm's Law For electrophysiology, perhaps the most important law of electricity is Ohm's law. The potential difference between two points linked by a current path with a conductance G and a current I is: 3 Representative Voltmeter with Infinite Resistance Instruments used to measure potentials must have a very high input resistance Rin. Capacitors and Their Electrical Fields A charge Q is stored in a capacitor of value C held at a potential DeltaV. Q = C* delta V capacitance 4 Capacitors in Parallel Add Their Values Currents Through Capacitors Membrane Behavior Compared with an Electrical Current A A membrane behaves electrically like a capacitance in parallel with a resistance. B Now, if we apply a pulse of current to the circuit, the current first charges up the Response of an RC parallel capacitance, then changes circuit to a step of current the voltage 5 The voltage V(t) approaches steady state along an exponential time course: The steady-state value Vinf (also called the infinite-time or equilibrium value) does not depend on the capacitance; it is simply determined by the current I and the membrane resistance R: This is just Ohm's law, of course; but when the membrane capacitance is in the circuit, the voltage is not reached immediately. -
Produktinformation LS 373, LS
Product Information LS 373 LS 383 Incremental Linear Encoders 04/2021 LS 300 series (46) 88 K 1±0.3 80 CL 3 74 32 13 5.3 5 0.05/13 A A K 12 18 18 ±5 P M4 4 P ±5 0.3 5.5 3 5.5 ± 0.1/80 F K 0 0.1 F K K 1) 2) 0.03 Specifications LS 383 LS 373 Measuring standard Glass scale –6 –1 ML+105 Coefficient of linear expansion Þtherm 8 · 10 K 5.5 (ML+94) ±0.4 K Accuracy grade ±5 µm 40±20 0.1 F K 65±20 P P 6 Measuring length ML* 70 120 170 220 270 320 370 420 470 520 570 620 670 720 in mm 770 820 870 920 970 1020 1140 1240 16.3 (26.3) Reference marks LS 3x3: 1 reference mark in the middle 4.8 LS 3x3 C: distance-coded SW8 4 0.1/80 F 4 0±2 4.5 K The LS 477 and LS 487 are available as 4.3 SW8 12 56 Interface C replacement devices on short notice. 1 VPP TTL ML Signal period 20 µm Cable with metal armor: LS 383, LS 373 PUR cable: LS 477, LS 487 Integrated interpolation – 1-fold 5-fold 10-fold 20-fold Measuring step – 5 µm 1 µm 0.5 µm 0.25 µm 4 8.5 12 56 7.3 Supply voltage 5 V ±0.25 V/< 150 mA F = Machine guideway 88 CL 97.5 Without load ML = Measuring length 115 P = Measuring point for mounting = 0 to ML Electrical connection PUR cable and PUR cable with metal armor; cable outlet to the right on the mounting block C = Cable CL = Cable length 127 Cable length 3 m, 6 m K = Required mating dimensions PUR cable with metal armor: LS 477, LS 487 Connecting element 15-pin D-sub connector (male) 15-pin D-sub connector (male) 15-pin D-sub connector (female) 9-pin D-sub connector (male) 12-pin M23 connector (male) 12-pin M23 connector (male) Traversing speed 60 m/min Required moving force 5 N Vibration 55 Hz to 2000 Hz 100 m/s2 Shock 6 ms 200 m/s2 Operating temperature 0 °C to 50 °C Protection IEC 60529 IP53 Mass without cable 0.3 kg + 0.57 kg/m of measuring length * Please select when ordering 1) The LS 487 is also available through the HEIDENHAIN Service department on short notice. -
The Current-/Voltage-Clamp
SimNeuron Tutorial 1 SimNeuron Current-and Voltage-Clamp Experiments in Virtual Laboratories Tutorial Contents: 1. Lab Design 2. Basic CURRENT-CLAMP Experiments 2.1 Action Potential, Conductances and Currents. 2.2 Passive Responses and Local Potentials 2.3 The Effects of Stimulus Amplitude and Duration. 2.4 Induction of Action Potential Sequences 2.5 How to get a New Neuron? 3. Basic VOLTAGE-CLAMP Experiments 3.1 Capacitive and Voltage-dependent Currents 3.2 RC-Compensation 3.3 Inward and outward currents. 3.4 Changed command potentials. 3.5 I-V-Curves and “Reversal Potential” 3.6 Reversal Potentials 3.7 Tail Currents 4. The Neuron Editor 5. Pre-Settings 2 SimNeuron Tutorial 1. Lab Design We have kept the screen design as simple as possible for easy accessible voltage- and current-clamp experiments, not so much focusing on technical details of experimentation but on a thorough understanding of neuronal excitability in comparison of current-clamp and voltage-clamp recordings. The Current-Clamp lab and Voltage-Clamp lab are organized in the same way. On the left hand side, there is a selection box of the already available neurons with several control buttons for your recordings, including a schematic drawing the experimental set-up. The main part of the screen (on the right) is reserved for the diagrams where stimuli can be set and recordings will be displayed. Initially, you will be in the Current-Clamp mode where you will only see a current-pulse (in red) in the lower diagram while the upper diagram should be empty. Entering the Voltage-Clamp mode you will find a voltage-pulse in the upper diagram (in blue) with an empty lower diagram. -
Gnu Coreutils Core GNU Utilities for Version 6.9, 22 March 2007
gnu Coreutils Core GNU utilities for version 6.9, 22 March 2007 David MacKenzie et al. This manual documents version 6.9 of the gnu core utilities, including the standard pro- grams for text and file manipulation. Copyright c 1994, 1995, 1996, 2000, 2001, 2002, 2003, 2004, 2005, 2006 Free Software Foundation, Inc. Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.2 or any later version published by the Free Software Foundation; with no Invariant Sections, with no Front-Cover Texts, and with no Back-Cover Texts. A copy of the license is included in the section entitled \GNU Free Documentation License". Chapter 1: Introduction 1 1 Introduction This manual is a work in progress: many sections make no attempt to explain basic concepts in a way suitable for novices. Thus, if you are interested, please get involved in improving this manual. The entire gnu community will benefit. The gnu utilities documented here are mostly compatible with the POSIX standard. Please report bugs to [email protected]. Remember to include the version number, machine architecture, input files, and any other information needed to reproduce the bug: your input, what you expected, what you got, and why it is wrong. Diffs are welcome, but please include a description of the problem as well, since this is sometimes difficult to infer. See section \Bugs" in Using and Porting GNU CC. This manual was originally derived from the Unix man pages in the distributions, which were written by David MacKenzie and updated by Jim Meyering.