Irish Fisheries Investigations
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Oncorhynchus Mykiss)
Growth Genes Are Implicated in The Evolutionary Divergence of Sympatric Piscivorous and Insectivorous Rainbow Trout (Oncorhynchus Mykiss) Jared A. Grummer ( [email protected] ) University of British Columbia Michael Whitlock University of British Columbia Patricia Schulte University of British Columbia Eric Taylor University of British Columbia Research Article Keywords: genome scan, small-effect loci, FST, GO analysis, rainbow trout, ecotype Posted Date: February 5th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-157772/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at BMC Ecology and Evolution on April 22nd, 2021. See the published version at https://doi.org/10.1186/s12862-021-01795-9. RH: GENOMIC DIVERGENCE OF SYMPATRIC TROUT ECOTYPES Growth genes are implicated in the evolutionary divergence of sympatric piscivorous and insectivorous rainbow trout (Oncorhynchus mykiss) Jared A. Grummer1, Michael Whitlock1, Patricia M. Schulte1, and Eric B. Taylor1,2 1Department of Zoology and Biodiversity Research Centre, University of British Columbia, 6270 University Blvd., Vancouver, BC V6T 1Z4, Canada 2Beaty Biodiversity Museum, University of British Columbia, 6270 University Blvd., Vancouver, BC V6T 1Z4, Canada Corresponding author: Jared A. Grummer; E-mail: [email protected] 1 1 Abstract.— 2 Background: Identifying ecologically significant phenotypic traits and the genomic 3 mechanisms that underly them are crucial steps in understanding the traits associated with 4 population divergence. We used genome-wide data to identify genomic regions associated 5 with a key trait that distinguishes two ecotypes of rainbow trout (Oncorhynchus mykiss)– 6 insectivores and piscivores – that coexist in Kootenay Lake, southeastern British Columbia, 7 for the non-breeding portion of the year. -
Report in Support of Appropriate Assessment Screening Proposed Mallow Town Hall Re-Development
Report in Support of Appropriate Assessment Screening Proposed Mallow Town Hall Re-development On Behalf of Cork County Council May 2021 Project Report in Support of Appropriate Assessment Screening for Mallow Town Hall Re-development Client Cork County Council Project Ref. 2128 Report No. 2128 Client Ref. - Date Revision Prepared By 09/04/21 1st Draft Sorcha Sheehy BSc PhD 07/05/21 Issue to client Carl Dixon BSc MSc DixonBrosnan Lios Ri Na hAoine, 1 Redemption Road, Cork. Tel 086 851 1437| [email protected] | www.dixonbrosnan.com This report and its contents are copyright of DixonBrosnan. It may not be reproduced without permission. The report is to be used only for its intended purpose. The report is confidential to the client, and is personal and non-assignable. No liability is admitted to third parties. ©DixonBrosnan 2021. AA Screening Mallow Town Hall Re-development 2 DixonBrosnan 2021 Table of Contents 1. Introduction ................................................................................................................... 5 1.1 Background .......................................................................................................................... 5 1.2 Aim of Report ....................................................................................................................... 5 1.3 Authors of Report ................................................................................................................. 6 2. Regulatory Context and Appropriate Assessment Procedure ......................................... -
Conservation of Salmon and Sea Trout (Draft Nets and Snap Nets)
Conservation of Salmon and Sea Trout (Draft Nets and Snap Nets) Bye-law No. 988, 2021 I, EAMON RYAN, Minister for the Environment, Climate and Communications, in exercise of the powers conferred on me by section 57 of the Inland Fisheries Act 2010 (No. 10 of 2010) , (as adapted by the Communications, Climate Action and Environment (Alteration of Name of Department and Title of Minister) Order 2020 (S.I. No. 373 of 2020)), hereby make the following bye-law: 1. (1) This Bye-law may be cited as the Conservation of Salmon and Sea Trout (Draft Nets and Snap Nets) Bye-law No. 988, 2021. (2) This Bye-law comes into operation on 12 May 2021. 2. In this Bye-law - “annual close season” has the meaning assigned to it by section 129 of the Fisheries (Consolidation) Act 1959; “Castlemaine Harbour” means that part of the sea - (a) east of an imaginary line drawn from Lack Point in the townland of Lack and running in a south-westerly direction through Cromane Point, in the townland of Cromane Lower, to Black Point in the townland of Dooghs, and (b) west or seaward of the defined mouth of the River Laune defined as an imaginary straight line drawn in a southerly direction from Pointantirrig, in the townland of Callanafersy West, to a point in the townland of Reen and that part west or seaward of the defined mouth of the River Maine defined as an imaginary straight line drawn in a north-easterly direction from Rosculien Point, in the townland of Callanafersy West, to Laghtacallow Point in the townland of Laghtacallow, all in the county of Kerry, as defined by the Definition No. -
Table of Contents
Water Framework Directive Fish Stock Survey of Rivers in the South Western River Basin District, 2013 Fiona L. Kelly, Ronan Matson, Lynda Connor, Rory Feeney, Emma Morrissey, John Coyne and Kieran Rocks Inland Fisheries Ireland, 3044 Lake Drive, Citywest Business Campus, Dublin 24 CITATION: Kelly, F.L., Matson, R., Connor, L., Feeney, R., Morrissey, E., Coyne, J. and Rocks, K. (2014) Water Framework Directive Fish Stock Survey of Rivers in the South Western River Basin District. Inland Fisheries Ireland, 3044 Lake Drive, Citywest Business Campus, Dublin 24, Ireland. Cover photo: WFD team electric-fishing © Inland Fisheries Ireland © Inland Fisheries Ireland 2014 2 ACKNOWLEDGEMENTS The authors wish to gratefully acknowledge the help and co-operation of the regional director Dr. Pat Buck and staff from IFI Macroom as well as various other offices throughout the region. The authors also gratefully acknowledge the help and cooperation of colleagues in IFI Swords. We would like to thank the landowners and angling clubs that granted us access to their land and respective fisheries. Furthermore, the authors would like to acknowledge the funding provided for the project from the Department of Communications, Energy and Natural Resources for 2013. PROJECT STAFF Project Director/Senior Research Officer: Dr. Fiona Kelly Project Manager: Ms. Lynda Connor Research Officer: Dr. Ronan Matson Technician Mr. Rory Feeney Technician: Ms. Emma Morrissey Technician: Mr. John Coyne GIS Officer: Mr. Kieran Rocks Fisheries Assistant: Mr. Johannes Bulfin (Jul 2013 – Dec 2013) Fisheries Assistant: Mr. John Finn (Jul 2013 – Dec 2013) Fisheries Assistant: Ms. Karen Kelly (Jul 2013 – Dec 2013) Fisheries Assistant: Ms. -
Identification and Modelling of a Representative Vulnerable Fish Species for Pesticide Risk Assessment in Europe
Identification and Modelling of a Representative Vulnerable Fish Species for Pesticide Risk Assessment in Europe Von der Fakultät für Mathematik, Informatik und Naturwissenschaften der RWTH Aachen University zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigte Dissertation vorgelegt von Lara Ibrahim, M.Sc. aus Mazeraat Assaf, Libanon Berichter: Universitätsprofessor Dr. Andreas Schäffer Prof. Dr. Christoph Schäfers Tag der mündlichen Prüfung: 30. Juli 2015 Diese Dissertation ist auf den Internetseiten der Universitätsbibliothek online verfügbar Erklärung Ich versichere, dass ich diese Doktorarbeit selbständig und nur unter Verwendung der angegebenen Hilfsmittel angefertigt habe. Weiterhin versichere ich, die aus benutzten Quellen wörtlich oder inhaltlich entnommenen Stellen als solche kenntlich gemacht zu haben. Lara Ibrahim Aachen, am 18 März 2015 Zusammenfassung Die Zulassung von Pflanzenschutzmitteln in der Europäischen Gemeinschaft verlangt unter anderem eine Abschätzung des Risikos für Organismen in der Umwelt, die nicht Ziel der Anwendung sind. Unvertretbare Auswirkungen auf den Naturhalt sollen vermieden werden. Die ökologische Risikoanalyse stellt die dafür benötigten Informationen durch eine Abschätzung der Exposition der Organismen und der sich daraus ergebenden Effekte bereit. Die Effektabschätzung beruht dabei hauptsächlich auf standardisierten ökotoxikologischen Tests im Labor mit wenigen, oft nicht einheimischen Stellvertreterarten. In diesen Tests werden z. B. Effekte auf das Überleben, das Wachstum und/oder die Reproduktion von Fischen bei verschiedenen Konzentrationen der Testsubstanz gemessen und Endpunkte wie die LC50 (Lethal Concentrations for 50%) oder eine NOEC (No Observed Effect Concentration, z. B. für Wachstum oder Reproduktionsparameter) abgeleitet. Für Fische und Wirbeltiere im Allgemeinen beziehen sich die spezifischen Schutzziele auf das Überleben von Individuen und die Abundanz und Biomasse von Populationen. -
Feeding Selectivity of Brown Trout (Salmo Trutta) in Loch Ness, Scotland Stephen Thackeray, Jonathan Grey and Roger Jones (S
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Aquatic Commons FEEDING SELECTIVITY OF BROWN TROUT 47 FEEDING SELECTIVITY OF BROWN TROUT (SALMO TRUTTA) IN LOCH NESS, SCOTLAND STEPHEN THACKERAY, JONATHAN GREY AND ROGER JONES (S. J. Thackeray, Dr J. Grey and Dr R. I. Jones, Department of Biological Sciences, IENS, Lancaster University, Lancaster LAI 4YQ, England.) [E-mail: s.j. thackeray @ lancaster. ac. uk] Introduction Loch Ness (Fig. 1) lies in the Great Glen, a glacially-deepened rift which was originally tectonic in origin. Hence the loch has a very regular trench-like morphometry, with steeply shelving sides sloping down to a flat bed. This produces a restricted littoral zone, where powerful wave action on the steep, rocky shores permits growth of few macrophytes (Burgis & Morris 1987). The loch has the greatest mean depth of any lake in Britain and Ireland (ca. 132 metres) and comprises two basins, the north reaching a maximum depth of 227 metres and the south a maximum of 221 metres (Young & Shine 1993). Consequently, Loch Ness contains the largest volume of water for any lake in the British Isles (74.52 m3 x 108). The loch drains eastwards via the River Ness and has been connected to the west coast by the Caledonian canal since 1822. It is oligotrophic and the water is extensively stained with peat (Burgis & Morris 1987), so that light attenuates rapidly in the Loch Ness water column. Martin & Shine (1988) found that most of the pelagic fish in Loch Ness inhabited the top 30 metres of the water column, with Arctic charr Salvelinus alpinus dominating much of this stratum. -
The Abundance of Large, Piscivorous Ferox Trout (Salmo Trutta) in Loch Rannoch, Scotland
The abundance of large, piscivorous Ferox Trout (Salmo trutta) in Loch Rannoch, Scotland Alastair Thorne1, Alisdair I. MacDonald1 and Joseph L. Thorley2 1 Freshwater Laboratory, Marine Scotland, Pitlochry, Scotland 2 Poisson Consulting, Nelson, British Columbia, Canada ABSTRACT Background. Ferox Trout are large, long-lived piscivorous Brown Trout (Salmo trutta). Due to their exceptionally large size, Ferox Trout are highly sought after by anglers while their life-history strategy, which includes delayed maturation, multiphasic growth and extended longevity, is of interest to ecological and evolutionary modelers. However, despite their recreational and theoretical importance, little is known about the typical abundance of Ferox Trout. Methods. To rectify this situation a 16 year angling-based mark-recapture study was conducted on Loch Rannoch, which at 19 km2 is one of the largest lakes in the United Kingdom. Results. A hierarchical Bayesian Jolly-Seber analysis of the data suggest that if individual differences in catchability are negligible the population of Ferox Trout in Loch Rannoch in 2009 was approximately 71 fish. The results also suggest that a single, often unaccompanied, highly-experienced angler was able to catch roughly 8% of the available fish on an annual basis. Discussion. It is recommended that anglers adopt a precautionary approach and release all trout with a fork length ≥400 mm caught by trolling in Loch Rannoch. There is an urgent need to assess the status of Ferox Trout in other lakes. Subjects Aquaculture, Fisheries and Fish Science, Conservation Biology, Ecology, Statistics Submitted 11 May 2016 Accepted 3 October 2016 Keywords Survival, Hierarchical, Bayesian, Exploitation, Jolly-Seber, Abundance, Ferox Trout, Published 1 November 2016 Brown Trout, Piscivorous Corresponding author Joseph L. -
Report No. 268
Report No. 268 FloodWarnTech Synthesis Report: Flood Warning Technologies for Ireland Authors: Michael Bruen and Mawuli Dzakpasu www.epa.ie ENVIRONMENTAL PROTECTION AGENCY Monitoring, Analysing and Reporting on the The Environmental Protection Agency (EPA) is responsible for Environment protecting and improving the environment as a valuable asset • Monitoring air quality and implementing the EU Clean Air for for the people of Ireland. We are committed to protecting people Europe (CAFÉ) Directive. and the environment from the harmful effects of radiation and • Independent reporting to inform decision making by national pollution. and local government (e.g. periodic reporting on the State of Ireland’s Environment and Indicator Reports). The work of the EPA can be divided into three main areas: Regulating Ireland’s Greenhouse Gas Emissions • Preparing Ireland’s greenhouse gas inventories and projections. Regulation: We implement effective regulation and environmental • Implementing the Emissions Trading Directive, for over 100 of compliance systems to deliver good environmental outcomes and the largest producers of carbon dioxide in Ireland. target those who don’t comply. Knowledge: We provide high quality, targeted and timely Environmental Research and Development environmental data, information and assessment to inform • Funding environmental research to identify pressures, inform decision making at all levels. policy and provide solutions in the areas of climate, water and sustainability. Advocacy: We work with others to advocate for a clean, productive and well protected environment and for sustainable Strategic Environmental Assessment environmental behaviour. • Assessing the impact of proposed plans and programmes on the Irish environment (e.g. major development plans). Our Responsibilities Radiological Protection Licensing • Monitoring radiation levels, assessing exposure of people in We regulate the following activities so that they do not endanger Ireland to ionising radiation. -
An Analysis of Brown Trout (Salmo Trutta, L.1758) Growth and Diet in Wester Ross, Scotland
BSc. HONOURS DEGREE IN Biosciences Trophic Status and Ontogeny: An Analysis of Brown Trout (Salmo trutta, L.1758) Growth and Diet in Wester Ross, Scotland Sara Mamo: M00209355 Department of Health and Social Sciences Supervisor: Dr. Stephen Kett 2013 1 Disclaimer This is an undergraduate student project. Views expressed and contents presented in these projects are those of students ONLY. Module leaders, project supervisors, the Natural Sciences Department and Middlesex University are not responsible for any of the views or contents in these projects. 2 Contents Page number Declaration………………………………………………….……………………………………………….............................I Abstract……………………………………………………..…………………………………………………………………………….II Acknowledgment……………………………………………………..……………………………………………………….......III CHAPTER I: Introduction…………………………………..……………………………………………………………………….1 1.1 . Salmonids………………………………………………………………………………………………....................1 1.2 . Trout diet and feeding behaviour…………………………………………………………………………….….2 1.3 . Food supply and growth of trout……………………………………………………………………………..….4 1.4 . Age and growth determination…………………………………………………………………………………...5 1.5 . Plasticity and Genetic control of fish growth……………………………………………………………….8 1.6 . Predation and competition…………………………………………………………………….....................9 1.7 . Aims and objectives…………………………………………………………………………………………………….9 CHAPTER ll: Materials and methods……………………………………………………….……………………………………9 2.1. Study area…………………………………………………………………………………………………………………….9 2.2. Fish diet analysis (gut contents)…………………………………………………………………………………..11 -
Irish Wildlife Manuals No. 76, National Otter Survey of Ireland 2010/12
ISSN 1393 – 6670 National Otter Survey of Ireland 2010/12 Irish Wildlife Manuals No. 76 National Otter Survey of Ireland 2010/12 Neil Reid1, Brian Hayden1,2, Mathieu G. Lundy1, Stéphane Pietravalle3, Robbie A. McDonald3,4, W. Ian Montgomery1 1 Quercus, School of Biological Sciences, Queen's University Belfast, MBC, 97 Lisburn Road, BELFAST. BT9 7BL. Northern Ireland (UK). www.quercus.ac.uk 2 University of Helsinki, Kilpisjärvi Biological Station, Faculty of Biological and Environmental Sciences, Viikinkaari 9, Helsinki. (Finland). www.helsinki.fi 3 Food and Environment Research Agency (FERA), Sand Hutton, York. YO41 1LZ. England (UK). www.fera.defra.gov.uk 4 University of Exeter, Environment and Sustainability Institute, Cornwall Campus, 7 Tremough Barton Colleges, Penryn, Cornwall. TR10 9EZ. England (UK). http://www.exeter.ac.uk/esi Citation: Reid, N., Hayden, B., Lundy, M.G., Pietravalle, S., McDonald, R.A. & Montgomery, W.I. (2013) National Otter Survey of Ireland 2010/12. Irish Wildlife Manuals No. 76. National Parks and Wildlife Service, Department of Arts, Heritage and the Gaeltacht, Dublin, Ireland. The NPWS Project Officer for this report was Dr Ferdia Marnell: [email protected] Cover photo: © Philip MacKenzie, Middlesex, London. (UK) www.photoshowcase.co.uk Irish Wildlife Manuals Series Editor: F. Marnell & R. Jeffrey © National Parks and Wildlife Service 2013 ISSN 1393 – 6670 Otter survey of Ireland 2010/12 Contents EXECUTIVE SUMMARY 5 ACKNOWLEDGEMENTS 7 1. INTRODUCTION 8 1.1 Species biology and ecology 9 1.2 Threats to otter populations 10 1.3 Associated habitats 10 1.4 Sources of bias and error in otter surveys 11 1.5 Current status 14 1.6 Aims of the current study 15 2. -
Morphological and Genetic Concordance of Cutthroat Trout Diversification from Western North America
Canadian Journal of Zoology Morphological and genetic concordance of cutthroat trout diversification from western North America Journal: Canadian Journal of Zoology Manuscript ID cjz-2020-0106.R2 Manuscript Type: Article Date Submitted by the 27-Nov-2020 Author: Complete List of Authors: Keeley, Ernest; Idaho State University, Department of Biological Sciences Loxterman, Janet; Idaho State University, Department of Biological Sciences Matsaw, Sammy;Draft Idaho State University, Department of Biological Sciences Njoroge, Zacharia; Idaho State University, Department of Biological Sciences Seiler, Meredith; Idaho State University, Department of Biological Sciences Seiler, Steven; Idaho State University, Department of Biological Sciences Is your manuscript invited for consideration in a Special Not applicable (regular submission) Issue?: MORPHOLOGY < Discipline, native distribution, phenotype, diversity, Keyword: intraspecific variation, cutthroat trout, Oncorhynchus clarkii © The Author(s) or their Institution(s) Page 1 of 42 Canadian Journal of Zoology 1 Morphological and genetic concordance of cutthroat trout diversification from western 2 North America 3 4 5 6 7 8 Ernest R. Keeley, Janet L. Loxterman, Sammy L. Matsaw, Zacharia M. Njoroge, Meredith B. 9 Seiler, and Steven M. Seiler 10 11 Draft 12 13 14 15 16 17 18 19 E.R. Keeley, J.L Loxterman, S.L. Matsaw, and Z. M. Njoroge. Department of Biological 20 Sciences, Stop 8007, Idaho State University, Pocatello, ID 83209, USA. 21 M.B. Seiler and S.M. Seiler. Department of Biology, Lock Haven University, Lock Haven, PA 22 17745, USA. 23 Corresponding Author: Ernest Keeley (email: [email protected]). 1 © The Author(s) or their Institution(s) Canadian Journal of Zoology Page 2 of 42 24 Abstract 25 The cutthroat trout, Oncorhynchus clarkii (Richardson, 1836), is one of the most widely 26 distributed species of freshwater fish in western North America. -
Irish Fisheries Investigations
SERIES A (Freshwater) No. 32 1989 IRISH FISHERIES INVESTIGATIONS R. D. Fluskey An Analysis of the Gravels used by Spawning Salmonids in Ireland IRISH FISHERIES INVESTIGATIONS SERIES A (Freshwater) No.32 1989 Roinn na Mara (Department of the Marine) An Anlaysis of the Gravels used by Spawning Salmonids in Ireland by R. D. Fluskey DUBLIN: PUBLISHED BY THE STATIONERY OFFICE TO BE PURCHASED FROM THE GOVERNMENT PUBLICATIONS SALE OFFICE, SUN ALLIANCE HOUSE MOLESWORTH STREET, DUBLIN 2 Price: £1.30 l An Analysis of the Gravels used by Spawning Salmonids in Ireland by R. D. FLUSKEY, Fisheries Research Centre, Department of the Marine, Abbotstown, Castleknock, Dublin 15 ABSTRACT Samples of gravel from 79 sites selected for spawning by Atlantic salmon, 9 selected by sea trout and 13 within spawning areas but known to be unused by spawning salmon ids were analysed. For comparison reported data on 81 samples from sites used by Pacific salmon were similarly analysed. No significant difference was found between the range of gravel distributions used by salmon and that used by sea trout. It could not be proved that the sites unused by spawning fish were avoided because of excess coarseness or fineness. The range used by Pacific salmon was found to be wider than that used by Atlantic salmon. A separate analysis was made of the portion of gravel coarser than 4mm in diameter. From this a suitable mixture for use in rehabilitating disrupted spawning areas is proposed. A proposal is made that for spawning gravel analysis the 0scale where 0 = -1.log2 particle size be replaced by a e scale where the multiplication by -1 is omitted.