MDM2, an Introduction
Total Page:16
File Type:pdf, Size:1020Kb

Load more
Recommended publications
-
Structural Basis for High-Affinity Peptide Inhibition of P53 Interactions with MDM2 and MDMX
Structural basis for high-affinity peptide inhibition of p53 interactions with MDM2 and MDMX Marzena Pazgiera,1, Min Liua,b,1, Guozhang Zoua, Weirong Yuana, Changqing Lia, Chong Lia, Jing Lia, Juahdi Monboa, Davide Zellaa, Sergey G. Tarasovc, and Wuyuan Lua,2 aInstitute of Human Virology, University of Maryland School of Medicine, 725 West Lombard Street, Baltimore, MD 21201; bThe First Affiliated Hospital, School of Medicine, Xi’an Jiaotong University, Shaanxi Province 710061, China; and cStructural Biophysics Laboratory, National Cancer Institute at Frederick, Frederick, MD 21702 Communicated by Robert C. Gallo, University of Maryland, Baltimore, MD, January 28, 2009 (received for review September 29, 2008) The oncoproteins MDM2 and MDMX negatively regulate the ac- ligase activity (10). Structurally related to MDM2, MDMX of tivity and stability of the tumor suppressor protein p53—a cellular 490-aa residues possesses domain structures arranged similarly process initiated by MDM2 and/or MDMX binding to the N- to MDM2, except that MDMX lacks ubiquitin-ligase function terminal transactivation domain of p53. MDM2 and MDMX in many (11, 12). Growing evidence supports that in unstressed cells tumors confer p53 inactivation and tumor survival, and are impor- MDM2 primarily controls p53 stability through ubiquitylation to tant molecular targets for anticancer therapy. We screened a target the tumor suppressor protein for constitutive degradation duodecimal peptide phage library against site-specifically biotin- by the proteasome (13, 14), whereas MDMX mainly functions as ylated p53-binding domains of human MDM2 and MDMX chemi- a significant p53 transcriptional antagonist independently of cally synthesized via native chemical ligation, and identified sev- MDM2 (15, 16). -
The Ubiquitin Proteasome System and Its Involvement in Cell Death Pathways
Cell Death and Differentiation (2010) 17, 1–3 & 2010 Macmillan Publishers Limited All rights reserved 1350-9047/10 $32.00 www.nature.com/cdd Editorial The ubiquitin proteasome system and its involvement in cell death pathways F Bernassola1, A Ciechanover2 and G Melino1,3 Cell Death and Differentiation (2010) 17, 1–3; doi:10.1038/cdd.2009.189 Following the awarding of the 2004 Nobel Prize in Chemistry Inactivation of the proteasome following caspase-mediated to Aaron Ciechanover, Avram Hershko, and Irwin A Rose cleavage may disable the proteasome, interfering with its for the discovery of ubiquitin (Ub)-mediated degradation, role in the regulation of key cellular processes and thereby Cell Death and Differentiation has drawn the attention of facilitating induction of apoptosis. The noted recent develop- its readers to the Ub Proteasome System (UPS) and its ments show how understanding of these functions is just involvement in regulating cell death pathways.1–4 The current starting to emerge. For example, why does dIAP1 associate set of reviews is an update on this theme.5–16 with multiple E2s via its RING finger? Does dIAP1 also interact From previous review articles published in Cell Death and with the E3 – the F-box protein Morgue, which is a part of an Differentiation, it was apparent that the UPS has a major SCF E3 complex? Why does dIAP1, which is an E3, have to mechanistic role in regulating cell death via modification and interact with other ligases such as the N-end rule UBR1 and degradation of key regulatory proteins involved in -
Prokaryotic Ubiquitin-Like Protein Remains Intrinsically Disordered When Covalently Attached to Proteasomal Target Proteins Jonas Barandun1,2, Fred F
Barandun et al. BMC Structural Biology (2017) 17:1 DOI 10.1186/s12900-017-0072-1 RESEARCH ARTICLE Open Access Prokaryotic ubiquitin-like protein remains intrinsically disordered when covalently attached to proteasomal target proteins Jonas Barandun1,2, Fred F. Damberger1, Cyrille L. Delley1, Juerg Laederach1, Frédéric H. T. Allain1 and Eilika Weber-Ban1* Abstract Background: The post-translational modification pathway referred to as pupylation marks proteins for proteasomal degradation in Mycobacterium tuberculosis and other actinobacteria by covalently attaching the small protein Pup (prokaryotic ubiquitin-like protein) to target lysine residues. In contrast to the functionally analogous eukaryotic ubiquitin, Pup is intrinsically disordered in its free form. Its unfolded state allows Pup to adopt different structures upon interaction with different binding partners like the Pup ligase PafA and the proteasomal ATPase Mpa. While the disordered behavior of free Pup has been well characterized, it remained unknown whether Pup adopts a distinct structure when attached to a substrate. Results: Using a combination of NMR experiments and biochemical analysis we demonstrate that Pup remains unstructured when ligated to two well-established pupylation substrates targeted for proteasomal degradation in Mycobacterium tuberculosis, malonyl transacylase (FabD) and ketopantoyl hydroxylmethyltransferase (PanB). Isotopically labeled Pup was linked to FabD and PanB by in vitro pupylation to generate homogeneously pupylated substrates suitable for NMR analysis. The single target lysine of PanB was identified by a combination of mass spectroscopy and mutational analysis. Chemical shift comparison between Pup in its free form and ligated to substrate reveals intrinsic disorder of Pup in the conjugate. Conclusion: When linked to the proteasomal substrates FabD and PanB, Pup is unstructured and retains the ability to interact with its different binding partners. -
Yichen – Structure and Allostery of the Chaperonin Groel. Allosteric
Literature Lunch 5-1-13 Yichen – J Mol Biol. 2013 May 13;425(9):1476-87. doi: 10.1016/j.jmb.2012.11.028. Epub 2012 Nov 24. Structure and Allostery of the Chaperonin GroEL. Saibil HR, Fenton WA, Clare DK, Horwich AL. Source Crystallography and Institute of Structural and Molecular Biology, Birkbeck College London, Malet Street, London WC1E 7HX, UK. Abstract Chaperonins are intricate allosteric machines formed of two back-to-back, stacked rings of subunits presenting end cavities lined with hydrophobic binding sites for nonnative polypeptides. Once bound, substrates are subjected to forceful, concerted movements that result in their ejection from the binding surface and simultaneous encapsulation inside a hydrophilic chamber that favors their folding. Here, we review the allosteric machine movements that are choreographed by ATP binding, which triggers concerted tilting and twisting of subunit domains. These movements distort the ring of hydrophobic binding sites and split it apart, potentially unfolding the multiply bound substrate. Then, GroES binding is accompanied by a 100° twist of the binding domains that removes the hydrophobic sites from the cavity lining and forms the folding chamber. ATP hydrolysis is not needed for a single round of binding and encapsulation but is necessary to allow the next round of ATP binding in the opposite ring. It is this remote ATP binding that triggers dismantling of the folding chamber and release of the encapsulated substrate, whether folded or not. The basis for these ordered actions is an elegant system of nested cooperativity of the ATPase machinery. ATP binds to a ring with positive cooperativity, and movements of the interlinked subunit domains are concerted. -
Genetic Variants of Microsomal Epoxide Hydrolase and Glutamate-Cysteine Ligase In
ERJ Express. Published on July 9, 2008 as doi: 10.1183/09031936.00065308 Genetic variants of microsomal epoxide hydrolase and glutamate-cysteine ligase in COPD Running Title: EPHX1 and GCL variation in COPD Sally Chappell1, Leslie Daly2, Kevin Morgan1, Tamar Guetta-Baranes1, Josep Roca3, Roberto Rabinovich3, Juzer Lotya2,Ann B. Millar4, Seamas C. Donnelly5, Vera Keatings6, William MacNee7, Jan Stolk8, Pieter S. Hiemstra8, Massimo Miniati9, Simonetta Monti9 Clare M. O’Connor5,10 and Noor Kalsheker1,10. 1 The University of Nottingham. Division of Clinical Chemistry, Molecular Medical Sciences, Institute of Genetics, University Hospital, Queens Medical Centre, Nottingham, NG7 2UH, UK 2 University College Dublin. UCD School of Public Health & Population Science, UCD, Belfield, Dublin 4, IRELAND 3 Hospital Clinico y Provincial de Barcelona. Service de Pneumologia, Hospital Clinic, Villarroel, 170, 08036, Barcelona, SPAIN. 4 University of Bristol. Lung Research Group, Department of Clinical Science at North Bristol, Southmead Hospital, Westbury on Trym, Bristol BS10 5NB, UK 5 University College Dublin. UCD School of Medicine and Medical Science, The Conway Institute, UCD, Belfield, Dublin 4, IRELAND 6 Letterkenny General Hospital, Letterkenny, Co. Donegal, Ireland 1 Copyright 2008 by the European Respiratory Society. 7 ELEGI Colt Laboratories, MRC Centre for Inflammation Research, Level 2, Room C2.29, The Queen’s Medical Research Institute, 47 Little France Crescent, Edinburgh EH16 4TJ. 8 Leiden University Medical Center, Department of Pulmonology (C3-P), Albinusdreef 2, P.O. Box 9600, 2300 RC Leiden, THE NETHERLANDS 9 CNR Institute of Clinical Physiology, Via G. Moruzzi 1-56124, Pisa, ITALY 10 Joint senior authors. Corresponding author: Professor Noor Kalsheker, Division of Clinical Chemistry, University Hospital, Nottingham, NG7 2UH, UK. -
Aminoacyl-Trna Synthetases: Versatile Players in the Changing Theater of Translation
Downloaded from rnajournal.cshlp.org on September 28, 2021 - Published by Cold Spring Harbor Laboratory Press RNA (2002), 8:1363–1372+ Cambridge University Press+ Printed in the USA+ Copyright © 2002 RNA Society+ DOI: 10+1017/S1355838202021180 MEETING REVIEW Aminoacyl-tRNA synthetases: Versatile players in the changing theater of translation CHRISTOPHER FRANCKLYN,1 JOHN J. PERONA,2 JOERN PUETZ,3 and YA-MING HOU4 1 Department of Biochemistry, University of Vermont, Burlington, Vermont 05405, USA 2 Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106-9510, USA 3 UPR9002 du Centre National de la Recherche Scientifique, Institut de Biologie Moléculaire et Cellulaire, Strasbourg, 67084 Cedex, France 4 Department of Biochemistry, Thomas Jefferson University, Philadelphia, Pennsylvania 19107, USA ABSTRACT Aminoacyl-tRNA synthetases attach amino acids to the 39 termini of cognate tRNAs to establish the specificity of protein synthesis. A recent Asilomar conference (California, January 13–18, 2002) discussed new research into the structure–function relationship of these crucial enzymes, as well as a multitude of novel functions, including par- ticipation in amino acid biosynthesis, cell cycle control, RNA splicing, and export of tRNAs from nucleus to cytoplasm in eukaryotic cells. Together with the discovery of their role in the cellular synthesis of proteins to incorporate selenocysteine and pyrrolysine, these diverse functions of aminoacyl-tRNA synthetases underscore the flexibility and adaptability -
SUMO and Ubiquitin in the Nucleus: Different Functions, Similar Mechanisms?
Downloaded from genesdev.cshlp.org on September 28, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW SUMO and ubiquitin in the nucleus: different functions, similar mechanisms? Grace Gill1 Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115, USA The small ubiquitin-related modifier SUMO posttrans- tin, SUMO modification regulates protein localization lationally modifies many proteins with roles in diverse and activity. processes including regulation of transcription, chroma- This review focuses on recent advances in our under- tin structure, and DNA repair. Similar to nonproteolytic standing of SUMO function and regulation, drawing on a roles of ubiquitin, SUMO modification regulates protein limited set of examples relating to gene expression, chro- localization and activity. Some proteins can be modified matin structure, and DNA repair. Comparison of SUMO by SUMO and ubiquitin, but with distinct functional and ubiquitin activities in the nucleus reveals interest- consequences. It is possible that the effects of ubiquiti- ing differences in function and suggests surprising simi- nation and SUMOylation are both largely due to binding larities in mechanism. Thus, for example, modification of proteins bearing specific interaction domains. Both of transcription factors and histones by ubiquitin is gen- modifications are reversible, and in some cases dynamic erally associated with increased gene expression whereas cycles of modification may be required for activity. Stud- modification of transcription factors and histones by ies of SUMO and ubiquitin in the nucleus are yielding SUMO is generally associated with decreased gene ex- new insights into regulation of gene expression, genome pression. In some cases, SUMO and ubiquitin may di- maintenance, and signal transduction. -
Mdm2 and Mdmx RING Domains Play Distinct Roles in the Regulation of P53 Responses: a Comparative Study of Mdm2 and Mdmx RING Domains in U2OS Cells
International Journal of Molecular Sciences Article Mdm2 and MdmX RING Domains Play Distinct Roles in the Regulation of p53 Responses: A Comparative Study of Mdm2 and MdmX RING Domains in U2OS Cells Olga Egorova, Heather HC Lau, Kate McGraphery and Yi Sheng * Department of Biology, York University, 4700 Keele Street, Toronto, ON M3J 1P3, Canada; [email protected] (O.E.); [email protected] (H.H.L.); [email protected] (K.M.) * Correspondence: [email protected]; Tel.: +1-416-736-2100 (ext. 33521) Received: 10 January 2020; Accepted: 9 February 2020; Published: 15 February 2020 Abstract: Dysfunction of the tumor suppressor p53 occurs in most human cancers. Mdm2 and MdmX are homologous proteins from the Mdm (Murine Double Minute) protein family, which play a critical role in p53 inactivation and degradation. The two proteins interact with one another via the intrinsic RING (Really Interesting New Gene) domains to achieve the negative regulation of p53. The downregulation of p53 is accomplished by Mdm2-mediated p53 ubiquitination and proteasomal degradation through the ubiquitin proteolytic system and by Mdm2 and MdmX mediated inhibition of p53 transactivation. To investigate the role of the RING domain of Mdm2 and MdmX, an analysis of the distinct functionalities of individual RING domains of the Mdm proteins on p53 regulation was conducted in human osteosarcoma (U2OS) cell line. Mdm2 RING domain was observed mainly localized in the cell nucleus, contrasting the localization of MdmX RING domain in the cytoplasm. Mdm2 RING was found to possess an endogenous E3 ligase activity, whereas MdmX RING did not. -
Microrna-29B-2-5P Inhibits Cell Proliferation by Directly Targeting
Li et al. BMC Cancer (2018) 18:681 https://doi.org/10.1186/s12885-018-4526-z RESEARCH ARTICLE Open Access MicroRNA-29b-2-5p inhibits cell proliferation by directly targeting Cbl-b in pancreatic ductal adenocarcinoma Ce Li1,2, Qian Dong3, Xiaofang Che1,2, Ling Xu1,2, Zhi Li1,2, Yibo Fan1,2, Kezuo Hou1,2, Shuo Wang1,2, Jinglei Qu1,2, Lu Xu1,2, Ti Wen1,2, Xianghong Yang4, Xiujuan Qu1,2* and Yunpeng Liu1,2* Abstract Background: MicroRNAs can be used in the prognosis of malignancies; however, their regulatory mechanisms are unknown, especially in pancreatic ductal adenocarcinoma (PDAC). Methods: In 120 PDAC specimens, miRNA levels were assessed by quantitative real time polymerase chain reaction (qRT-PCR). Then, the role of miR-29b-2-5p in cell proliferation was evaluated both in vitro (Trypan blue staining and cell cycle analysis in the two PDAC cell lines SW1990 and Capan-2) and in vivo using a xenograft mouse model. Next, bioinformatics methods, a luciferase reporter assay, Western blot, and immunohistochemistry (IHC) were applied to assess the biological effects of Cbl-b inhibition by miR-29b-2-5p. Moreover, the relationship between Cbl-b and p53 was evaluated by immunoprecipitation (IP), Western blot, and immunofluorescence. Results: From the 120 PDAC patients who underwent surgical resection, ten patients with longest survival and ten with shortest survival were selected. We found that high miR-29b-2-5p expression was associated with good prognosis (p = 0.02). The validation cohort confirmed miR-29b-2-5p as an independent prognostic factor in PDAC (n = 100, 95% CI = 0.305–0.756, p = 0.002). -
Loss of Conserved Ubiquitylation Sites in Conserved Proteins During Human Evolution
INTERNATIONAL JOURNAL OF MOleCular meDICine 42: 2203-2212, 2018 Loss of conserved ubiquitylation sites in conserved proteins during human evolution DONGBIN PARK, CHUL JUN GOH, HYEIN KIM, JI SEOK LEE and YOONSOO HAHN Department of Life Science, Chung‑Ang University, Seoul 06974, Republic of Korea Received January 30, 2018; Accepted July 6, 2018 DOI: 10.3892/ijmm.2018.3772 Abstract. Ubiquitylation of lysine residues in proteins serves Introduction a pivotal role in the efficient removal of misfolded or unused proteins and in the control of various regulatory pathways Ubiquitylation, in which the highly conserved 76‑residue poly- by monitoring protein activity that may lead to protein peptide ubiquitin is covalently attached to a lysine residue of degradation. The loss of ubiquitylated lysines may affect substrate proteins, mediates the targeted destruction of ubiq- the ubiquitin‑mediated regulatory network and result in the uitylated proteins by the ubiquitin‑proteasome system (1‑4). emergence of novel phenotypes. The present study analyzed The ubiquitin‑mediated protein degradation pathway serves a mouse ubiquitylation data and orthologous proteins from crucial role in the efficient and specific removal of misfolded 62 mammals to identify 193 conserved ubiquitylation sites from proteins and certain key regulatory proteins (5,6). Ubiquitin 169 proteins that were lost in the Euarchonta lineage leading and other ubiquitin‑like proteins, including autophagy‑related to humans. A total of 8 proteins, including betaine homo- protein 8, Ubiquitin‑like -
MSD® Ubiquitinated MDM2 Assay Whole Cell Lysate
® MSD Ubiquitinated MDM2 Assay Whole Cell Lysate Kit For quantitative determination in human, mouse, and rat whole cell lysate samples Alzheimer’s Disease MDM2 BioProcess Cardiac Cell Signaling Clinical Immunology Cytokines Hypoxia Immunogenicity Inflammation Metabolic Oncology Toxicology Vascular MDM2 (murine double minute 2), an E3 ubiquitin ligase and a negative regulator of p53, is a 56 kDa oncoprotein which is ubiquitinated and phosphorylated. MDM2 contains an amino terminal p53 interaction domain, an acidic domain in the region of amino acids 250–300 (phosphorylation in this region is believed to play a role in MDM2 regulation), and a carboxy-terminal RING domain Catalog Numbers 1 containing a Cis2-His2-Cis4 consensus motif which binds zinc and is responsible for the E3 ubiquitin ligase activity of MDM2. MDM2 Ubiquitinated MDM2 Whole degradation is controlled by self-ubiquitination, phosphorylation, and potentially through ubiquitination by other, not yet identified, E3 2 3 Cell Lysate Kit ligases. DNA damage and cellular stress trigger MDM2 degradation, releasing p53 from MDM2-mediated negative regulation. 4 Kit size Deletion of MDM2 in mouse models is lethal in a p53 dependent manner, and overexpression of MDM2 is seen in many cancers with 5 1 plate K152FJD-1 non-mutated p53 leading to the conclusion that MDM2 is oncogenic by way of p53 inactivation. Because of the important role p53 5 plates K152FJD-2 tumor suppression plays in many different forms of cancer, there has been extensive research on the interactions between MDM2 and 20 plates K152FJD-3 p53 and considerable interest in identifying drugs capable of modulating the MDM2‒p53 interaction. -
T4 DNA Ligase Protocol
Certificate of Analysis T4 DNA Ligase: Part# 9PIM180 Size Part No. (Weiss units) M180A 100 Revised 4/18 M180B 500 M179A (High Conc.) 500 Ligase Buffer, 10X (C126A, C126B): The Ligase 10X Buffer supplied with this enzyme has a composition of 300mM Tris-HCl (pH 7.8), 100mM MgCl2, 100mM DTT and 10mM ATP. The performance of this buffer depends on the integrity of the ATP. Store the buffer in small aliquots at –20°C to minimize degradation of the ATP and DTT. *AF9PIM180 0418M180* Note: The DTT in the Ligase 10X Buffer may precipitate upon freezing. If this occurs, vortex the buffer until the precipitate AF9PIM180 0418M180 is in solution (typically 1–2 minutes). The performance of the product is not affected provided that the precipitate is resuspended. Enzyme Storage Buffer: T4 DNA Ligase is supplied in 10mM Tris-HCl (pH 7.4), 50mM KCl, 1mM DTT, 0.1mM EDTA and 50% glycerol. Source: E. coli strain expressing a recombinant clone. Unit Definition: 0.01 Weiss unit of T4 DNA Ligase is defined as the amount of enzyme required to catalyze the ligation of greater than 95% of the Hind III fragments of 1µg of Lambda DNA at 16°C in 20 minutes. See the unit concentration on the Product Information Label. Storage Temperature: Store at –20°C. Avoid multiple freeze-thaw cycles and exposure to frequent temperature changes. See the expiration date on the Product Information Label. Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Quality Control Assays Telephone 608-274-4330 Toll Free 800-356-9526 Activity Assays Fax 608-277-2516 Internet www.promega.com Blue/White Assay: pGEM®-3Zf(+) Vector is digested with representative restriction enzymes (leaving 5´-termini, 3´-termini or blunt ends).