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Perspectives in Phycology Vol
Perspectives in Phycology Vol. 3 (2016), Issue 3, p. 141–154 Article Published online June 2016 Diversity and ecology of green microalgae in marine systems: an overview based on 18S rRNA gene sequences Margot Tragin1, Adriana Lopes dos Santos1, Richard Christen2,3 and Daniel Vaulot1* 1 Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7144, Station Biologique, Place Georges Teissier, 29680 Roscoff, France 2 CNRS, UMR 7138, Systématique Adaptation Evolution, Parc Valrose, BP71. F06108 Nice cedex 02, France 3 Université de Nice-Sophia Antipolis, UMR 7138, Systématique Adaptation Evolution, Parc Valrose, BP71. F06108 Nice cedex 02, France * Corresponding author: [email protected] With 5 figures in the text and an electronic supplement Abstract: Green algae (Chlorophyta) are an important group of microalgae whose diversity and ecological importance in marine systems has been little studied. In this review, we first present an overview of Chlorophyta taxonomy and detail the most important groups from the marine environment. Then, using public 18S rRNA Chlorophyta sequences from culture and natural samples retrieved from the annotated Protist Ribosomal Reference (PR²) database, we illustrate the distribution of different green algal lineages in the oceans. The largest group of sequences belongs to the class Mamiellophyceae and in particular to the three genera Micromonas, Bathycoccus and Ostreococcus. These sequences originate mostly from coastal regions. Other groups with a large number of sequences include the Trebouxiophyceae, Chlorophyceae, Chlorodendrophyceae and Pyramimonadales. Some groups, such as the undescribed prasinophytes clades VII and IX, are mostly composed of environmental sequences. The 18S rRNA sequence database we assembled and validated should be useful for the analysis of metabarcode datasets acquired using next generation sequencing. -
Algae & Marine Plants of Point Reyes
Algae & Marine Plants of Point Reyes Green Algae or Chlorophyta Genus/Species Common Name Acrosiphonia coalita Green rope, Tangled weed Blidingia minima Blidingia minima var. vexata Dwarf sea hair Bryopsis corticulans Cladophora columbiana Green tuft alga Codium fragile subsp. californicum Sea staghorn Codium setchellii Smooth spongy cushion, Green spongy cushion Trentepohlia aurea Ulva californica Ulva fenestrata Sea lettuce Ulva intestinalis Sea hair, Sea lettuce, Gutweed, Grass kelp Ulva linza Ulva taeniata Urospora sp. Brown Algae or Ochrophyta Genus/Species Common Name Alaria marginata Ribbon kelp, Winged kelp Analipus japonicus Fir branch seaweed, Sea fir Coilodesme californica Dactylosiphon bullosus Desmarestia herbacea Desmarestia latifrons Egregia menziesii Feather boa Fucus distichus Bladderwrack, Rockweed Haplogloia andersonii Anderson's gooey brown Laminaria setchellii Southern stiff-stiped kelp Laminaria sinclairii Leathesia marina Sea cauliflower Melanosiphon intestinalis Twisted sea tubes Nereocystis luetkeana Bull kelp, Bullwhip kelp, Bladder wrack, Edible kelp, Ribbon kelp Pelvetiopsis limitata Petalonia fascia False kelp Petrospongium rugosum Phaeostrophion irregulare Sand-scoured false kelp Pterygophora californica Woody-stemmed kelp, Stalked kelp, Walking kelp Ralfsia sp. Silvetia compressa Rockweed Stephanocystis osmundacea Page 1 of 4 Red Algae or Rhodophyta Genus/Species Common Name Ahnfeltia fastigiata Bushy Ahnfelt's seaweed Ahnfeltiopsis linearis Anisocladella pacifica Bangia sp. Bossiella dichotoma Bossiella -
Phylogenetic Placement of Botryococcus Braunii (Trebouxiophyceae) and Botryococcus Sudeticus Isolate Utex 2629 (Chlorophyceae)1
J. Phycol. 40, 412–423 (2004) r 2004 Phycological Society of America DOI: 10.1046/j.1529-8817.2004.03173.x PHYLOGENETIC PLACEMENT OF BOTRYOCOCCUS BRAUNII (TREBOUXIOPHYCEAE) AND BOTRYOCOCCUS SUDETICUS ISOLATE UTEX 2629 (CHLOROPHYCEAE)1 Hoda H. Senousy, Gordon W. Beakes, and Ethan Hack2 School of Biology, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, UK The phylogenetic placement of four isolates of a potential source of renewable energy in the form of Botryococcus braunii Ku¨tzing and of Botryococcus hydrocarbon fuels (Metzger et al. 1991, Metzger and sudeticus Lemmermann isolate UTEX 2629 was Largeau 1999, Banerjee et al. 2002). The best known investigated using sequences of the nuclear small species is Botryococcus braunii Ku¨tzing. This organism subunit (18S) rRNA gene. The B. braunii isolates has a worldwide distribution in fresh and brackish represent the A (two isolates), B, and L chemical water and is occasionally found in salt water. Although races. One isolate of B. braunii (CCAP 807/1; A race) it grows relatively slowly, it sometimes forms massive has a group I intron at Escherichia coli position 1046 blooms (Metzger et al. 1991, Tyson 1995). Botryococcus and isolate UTEX 2629 has group I introns at E. coli braunii strains differ in the hydrocarbons that they positions 516 and 1512. The rRNA sequences were accumulate, and they have been classified into three aligned with 53 previously reported rRNA se- chemical races, called A, B, and L. Strains in the A race quences from members of the Chlorophyta, includ- accumulate alkadienes; strains in the B race accumulate ing one reported for B. -
A Morphological and Phylogenetic Study of the Genus Chondria (Rhodomelaceae, Rhodophyta)
Title A morphological and phylogenetic study of the genus Chondria (Rhodomelaceae, Rhodophyta) Author(s) Sutti, Suttikarn Citation 北海道大学. 博士(理学) 甲第13264号 Issue Date 2018-06-29 DOI 10.14943/doctoral.k13264 Doc URL http://hdl.handle.net/2115/71176 Type theses (doctoral) File Information Suttikarn_Sutti.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP A morphological and phylogenetic study of the genus Chondria (Rhodomelaceae, Rhodophyta) 【紅藻ヤナギノリ属(フジマツモ科)の形態学的および系統学的研究】 Suttikarn Sutti Department of Natural History Sciences, Graduate School of Science Hokkaido University June 2018 1 CONTENTS Abstract…………………………………………………………………………………….2 Acknowledgement………………………………………………………………………….5 General Introduction………………………………………………………………………..7 Chapter 1. Morphology and molecular phylogeny of the genus Chondria based on Japanese specimens……………………………………………………………………….14 Introduction Materials and Methods Results and Discussions Chapter 2. Neochondria gen. nov., a segregate of Chondria including N. ammophila sp. nov. and N. nidifica comb. nov………………………………………………………...39 Introduction Materials and Methods Results Discussions Conclusion Chapter 3. Yanagi nori—the Japanese Chondria dasyphylla including a new species and a probable new record of Chondria from Japan………………………………………51 Introduction Materials and Methods Results Discussions Conclusion References………………………………………………………………………………...66 Tables and Figures 2 ABSTRACT The red algal tribe Chondrieae F. Schmitz & Falkenberg (Rhodomelaceae, Rhodophyta) currently -
Colpomenia Sinuosa (Mertens Ex Roth) Derbès & Solier, 1851
Colpomenia sinuosa (Mertens ex Roth) Derbès & Solier, 1851 AphiaID: 145857 . Chromista (Reino) > Harosa (Subreino) > Heterokonta (Infrareino) > Ochrophyta (Filo) > Phaeista (Subfilo) > Limnista (Infrafilo) > Fucistia (Superclasse) > Phaeophyceae (Classe) > Ectocarpales (Ordem) > Scytosiphonaceae (Familia) © Vasco Ferreira Sinónimos Asperococcus sinuosus (Mertens ex Roth) Bory de Saint-Vincent, 1832 Asperococcus sinuosus (C.Agardh) Zanardini, 1841 Colpomenia sinuosa f. typica Setchell & N.L.Gardner, 1925 Encoelium sinuosum (Mertens ex Roth) C.Agardh, 1820 Encoelium vesicatum (Harvey) Kützing, 1849 1 Hydroclathrus sinuosus (Mertens) ex Roth) Zanardini, 1843 Soranthera leathesiformis P.Crouan & H.Crouan, 1865 Stilophora sinuosa (Mertens ex Roth) C.Agardh, 1827 Stilophora vesicata Harvey, 1834 Tremella cerina Clemente, 1807 Tremella rugosula Clemente, 1807 Ulva sinuosa Mertens ex Roth, 1806 Referências additional source Guiry, M.D. & Guiry, G.M. (2019). AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. , available online at http://www.algaebase.org [details] basis of record Guiry, M.D. (2001). Macroalgae of Rhodophycota, Phaeophycota, Chlorophycota, and two genera of Xanthophycota, in: Costello, M.J. et al. (Ed.) (2001). European register of marine species: a check-list of the marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels, 50: pp. 20-38[details] additional source Silva, P.C.; Basson, P.W.; Moe, R.L. (1996). Catalogue of the Benthic Marine Algae of the Indian Ocean. University of California Publications in Botany. 79, xiv+1259 pp. ISBN 0–520–09810–2., available online athttps://books.google.com/books?id=vuWEemVY8WEC&pg=PA5 [details] additional source Fredericq, S., T. O. Cho, S. A. Earle, C. F. Gurgel, D. M. Krayesky, L. -
Chemical Composition and Potential Practical Application of 15 Red Algal Species from the White Sea Coast (The Arctic Ocean)
molecules Article Chemical Composition and Potential Practical Application of 15 Red Algal Species from the White Sea Coast (the Arctic Ocean) Nikolay Yanshin 1, Aleksandra Kushnareva 2, Valeriia Lemesheva 1, Claudia Birkemeyer 3 and Elena Tarakhovskaya 1,4,* 1 Department of Plant Physiology and Biochemistry, Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia; [email protected] (N.Y.); [email protected] (V.L.) 2 N. I. Vavilov Research Institute of Plant Industry, 190000 St. Petersburg, Russia; [email protected] 3 Faculty of Chemistry and Mineralogy, University of Leipzig, 04103 Leipzig, Germany; [email protected] 4 Vavilov Institute of General Genetics RAS, St. Petersburg Branch, 199034 St. Petersburg, Russia * Correspondence: [email protected] Abstract: Though numerous valuable compounds from red algae already experience high demand in medicine, nutrition, and different branches of industry, these organisms are still recognized as an underexploited resource. This study provides a comprehensive characterization of the chemical composition of 15 Arctic red algal species from the perspective of their practical relevance in medicine and the food industry. We show that several virtually unstudied species may be regarded as promis- ing sources of different valuable metabolites and minerals. Thus, several filamentous ceramialean algae (Ceramium virgatum, Polysiphonia stricta, Savoiea arctica) had total protein content of 20–32% of dry weight, which is comparable to or higher than that of already commercially exploited species Citation: Yanshin, N.; Kushnareva, (Palmaria palmata, Porphyra sp.). Moreover, ceramialean algae contained high amounts of pigments, A.; Lemesheva, V.; Birkemeyer, C.; macronutrients, and ascorbic acid. Euthora cristata (Gigartinales) accumulated free essential amino Tarakhovskaya, E. -
Getative Tissues; the GDBH Predicts Metabolic Costs Associated with Them
J. Phycol. 35, 483±492 (1999) PHLOROTANNIN ALLOCATION AMONG TISSUES OF NORTHEASTERN PACIFIC KELPS AND ROCKWEEDS1 Kathryn L. Van Alstyne2 Department of Zoology, Oregon State University, Corvallis, Oregon 97331 James J. McCarthy III, Cynthia L. Hustead, and Laura J. Kearns Department of Biology, Kenyon College, Gambier, Ohio 43022 Optimal defense theory (ODT) predicts antiher- Abbreviations: DM, dry mass; GDBH, growth±dif- bivore defensive compounds will be allocated so ferentiation balance hypothesis; ODT, optimal de- that the most valuable or most susceptible tissues fense theory will be best defended. The growth±differentiation balance hypothesis (GDBH) predicts that defense al- location will be a result of trade-offs between growth Plants allocate materials and energy among criti- and defense. Thus, these two theories predict op- cal functions such as maintenance, growth, repro- posite allocation patterns with respect to ``valuable,'' duction, and defense (Bazazz and Grace 1997 and actively growing meristematic and reproductive tis- citations therein). It is widely assumed the total sues. ODT predicts that meristems and reproductive amount of resources available for these functions is tissues should have higher defense levels than non- limited and all of these functions have signi®cant meristematic vegetative tissues; the GDBH predicts metabolic costs associated with them. Consequently, the defense levels of meristems and reproductive over evolutionary time there should be selection for tissues will be lower than vegetative tissues. We ex- individuals to distribute resources among functions amined allocation patterns of phlorotannins in 21 in ways that maximize overall ®tness, assuming that species of kelps (Order Laminariales) and rock- allocation strategies are not limited by physiological weeds (Order Fucales) from nine sites on the west or other constraints. -
Altitudinal Zonation of Green Algae Biodiversity in the French Alps
Altitudinal Zonation of Green Algae Biodiversity in the French Alps Adeline Stewart, Delphine Rioux, Fréderic Boyer, Ludovic Gielly, François Pompanon, Amélie Saillard, Wilfried Thuiller, Jean-Gabriel Valay, Eric Marechal, Eric Coissac To cite this version: Adeline Stewart, Delphine Rioux, Fréderic Boyer, Ludovic Gielly, François Pompanon, et al.. Altitu- dinal Zonation of Green Algae Biodiversity in the French Alps. Frontiers in Plant Science, Frontiers, 2021, 12, pp.679428. 10.3389/fpls.2021.679428. hal-03258608 HAL Id: hal-03258608 https://hal.archives-ouvertes.fr/hal-03258608 Submitted on 11 Jun 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fpls-12-679428 June 4, 2021 Time: 14:28 # 1 ORIGINAL RESEARCH published: 07 June 2021 doi: 10.3389/fpls.2021.679428 Altitudinal Zonation of Green Algae Biodiversity in the French Alps Adeline Stewart1,2,3, Delphine Rioux3, Fréderic Boyer3, Ludovic Gielly3, François Pompanon3, Amélie Saillard3, Wilfried Thuiller3, Jean-Gabriel Valay2, Eric Maréchal1* and Eric Coissac3* on behalf of The ORCHAMP Consortium 1 Laboratoire de Physiologie Cellulaire et Végétale, CEA, CNRS, INRAE, IRIG, Université Grenoble Alpes, Grenoble, France, 2 Jardin du Lautaret, CNRS, Université Grenoble Alpes, Grenoble, France, 3 Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, Grenoble, France Mountain environments are marked by an altitudinal zonation of habitat types. -
Collections from the Mesophytic Zone Off Bermuda Reveal Three Species of Kallymeniaceae (Gigartinales, Rhodophyta) in Genera with Transoceanic Distributions1
J. Phycol. *, ***–*** (2019) © 2018 Phycological Society of America DOI: 10.1111/jpy.12828 COLLECTIONS FROM THE MESOPHYTIC ZONE OFF BERMUDA REVEAL THREE SPECIES OF KALLYMENIACEAE (GIGARTINALES, RHODOPHYTA) IN GENERA WITH TRANSOCEANIC DISTRIBUTIONS1 Craig W. Schneider 2 Department of Biology, Trinity College, Hartford, Connecticut 06106,USA Thea R. Popolizio Department of Biology, Salem State University, Salem, Massachusetts 01970, USA and Gary W. Saunders Centre for Environmental & Molecular Algal Research, Department of Biology, University of New Brunswick, Fredericton, New Brunswick, Canada E3B 5A3 A molecular survey of red algae collected by mostly on sorting out taxa above the species level in technical divers and submersibles from 90 m in the order to present a “contemporary genus-level taxo- mesophotic zone off the coast of Bermuda revealed nomic framework” built on the principle of mono- three species assignable to the Kallymeniaceae. Two phyly for other workers to later fill in species. One of the species are representative of recently described genus previously placed in synonymy with Kallymenia genera centered in the western Pacific in Australia was resurrected (Euhymenia; but see Wynne 2018), and New Zealand, Austrokallymenia and Psaromenia several species were moved to newly described gen- and the third from the Mediterranean Sea and the era removing polyphyletic or paraphyletic group- eastern Atlantic, Nothokallymenia. A phylogenetic ings, and ten new genera were erected to house analysis of concatenated mitochondrial (COI-5P) and them (Saunders et al. 2017). chloroplast (rbcL) genes, as well as morphological Many of the species discovered in the mesophotic characteristics, revealed that two are shown to be new zone off Bermuda in 2016 on the Nekton XL Catlin species with distant closest relatives (N. -
Algae-2019-34-3-217-Suppl2.Pdf
Algae July 22, 2019 [Epub ahead of print] Supplementary Table S2. Mitochondrial cox3 and atp6 sequences retrieved from GenBank in this study Accession No. Species name Reference cox3 atp6 Colpomenia bullosa JQ918798 - Lee et al. (2012) JQ918799 - C. claytoniae HQ833813 - Boo et al. (2011) HQ833814 - C. ecuticulata HQ833775 - Boo et al. (2011) HQ833776 - C. expansa HQ833780 - Boo et al. (2011) HQ833781 - C. durvillei JQ918811 - Lee et al. (2012) JQ918812 - C. peregrina JX027338 JX027298 JX027362 JX027330 Lee et al. (2014a) JX027370 JX027336 JX027375 JX027337 C. phaeodactyla JQ918814 - Lee et al. (2012) JQ918815 - C. ramosa JQ918789 - Lee et al. (2012) C. sinuosa HQ833777 - Boo et al. (2011) HQ833778 - JX944760 - Lee et al. (2013) JX944761 - C. tuberculata HQ833773 - Boo et al. (2011) HQ833774 - Ectocarpus siliculosus NC030223 NC030223 Cock et al. (2010) Scytosiphon lomentaria NC025240 NC025240 Liu et al. (2016) -, no sequences found in GenBank. REFERENCES M., Tonon, T., Tregear, J. W., Valentin, K., von Dassow, P., Yamagishi, T., Van de Peer, Y. & Wincker, P. 2010. The Boo, S. M., Lee, K. M., Cho, G. Y. & Nelson, W. 2011. Colpome- Ectocarpus genome and the independent evolution of nia claytonii sp. nov. (Scytosiphonaceae, Phaeophyceae) multicellularity in brown algae. Nature 465:617-621. based on morphology and mitochondrial cox3 sequenc- Lee, K. M., Boo, G. H., Coyer, J. A., Nelson, W. W., Miller, K. A. & es. Bot. Mar. 54:159-167. Boo, S. M. 2014a. Distribution patterns and introduction Cock, J. M., Sterck, L., Rouzé, P., Scornet, D., Allen, A. E., pathways of the cosmopolitan brown alga Colpomenia Amoutzias, G., Anthouard, V., Artiguenave, F., Aury, J. -
Extraction Assistée Par Enzyme De Phlorotannins Provenant D'algues
Extraction assistée par enzyme de phlorotannins provenant d’algues brunes du genre Sargassum et les activités biologiques Maya Puspita To cite this version: Maya Puspita. Extraction assistée par enzyme de phlorotannins provenant d’algues brunes du genre Sargassum et les activités biologiques. Biotechnologie. Université de Bretagne Sud; Universitas Diponegoro (Semarang), 2017. Français. NNT : 2017LORIS440. tel-01630154v2 HAL Id: tel-01630154 https://hal.archives-ouvertes.fr/tel-01630154v2 Submitted on 9 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Enzyme-assisted extraction of phlorotannins from Sargassum and biological activities by: Maya Puspita 26010112510005 Doctoral Program of Coastal Resources Managment Diponegoro University Semarang 2017 Extraction assistée par enzyme de phlorotannins provenant d’algues brunes du genre Sargassum et les activités biologiques Maria Puspita 2017 Extraction assistée par enzyme de phlorotannins provenant d’algues brunes du genre Sargassum et les activités biologiques par: Maya Puspita Ecole Doctorale -
Seasonal Growth and Recruitment of Himanthalia Elongata Fucales, Phaeophycota) in Different Habitats on the Irish West Coast
European Journal of Phycology ISSN: 0967-0262 (Print) 1469-4433 (Online) Journal homepage: http://www.tandfonline.com/loi/tejp20 Seasonal growth and recruitment of Himanthalia elongata Fucales, Phaeophycota) in different habitats on the Irish west coast Dagmar Stengel , Robert Wilkes & Michael Guiry To cite this article: Dagmar Stengel , Robert Wilkes & Michael Guiry (1999) Seasonal growth and recruitment of Himanthalia elongata Fucales, Phaeophycota) in different habitats on the Irish west coast, European Journal of Phycology, 34:3, 213-221, DOI: 10.1080/09670269910001736272 To link to this article: http://dx.doi.org/10.1080/09670269910001736272 Published online: 03 Jun 2010. Submit your article to this journal Article views: 121 View related articles Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tejp20 Download by: [78.193.1.50] Date: 19 September 2015, At: 02:26 Eur. J. Phycol. (1999), 34: 213–221. Printed in the United Kingdom 213 Seasonal growth and recruitment of Himanthalia elongata (Fucales, Phaeophycota) in different habitats on the Irish west coast DAGMAR B. STENGEL, ROBERT J. WILKES AND MICHAEL D. GUIRY Department of Botany and Martin Ryan Marine Science Institute, National University of Ireland, Galway, Ireland (Received 17 October 1998; accepted 4 February 1999) Vegetative and reproductive growth of individually marked plants of the brown alga Himanthalia elongata was monitored over 2n5 years at two sites with different wave exposures on the Irish west coast. Macro-recruits were first visible to the unaided eye in February\March. About 65% of all buttons produced receptacles during autumn of the same year, whereas others remained sterile.