Pigments, Microbial Laurent Dufossé, University of Reunion Island, Indian Ocean, France
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Microsporum Canis Genesig Standard
Primerdesign TM Ltd Microsporum canis PQ-loop repeat protein gene genesig® Standard Kit 150 tests For general laboratory and research use only Quantification of Microsporum canis genomes. 1 genesig Standard kit handbook HB10.04.10 Published Date: 09/11/2018 Introduction to Microsporum canis Microsporum canis is a zoophilic dermatophyte which is responsible for dermatophytosis in dogs and cats. They cause superficial infections of the scalp (tinea capitis) in humans and ringworm in cats and dogs. They belong to the family Arthrodermataceae and are most commonly found in humid and warm climates. They have numerous multi-celled macroconidia which are typically spindle-shaped with 5-15 cells, verrucose, thick-walled, often having a terminal knob and 35-110 by 12-25 µm. In addition, they produce septate hyphae and microconidia and the Microsporum canis genome is estimated at 23 Mb. The fungus is transmitted from animals to humans when handling infected animals or by contact with arthrospores contaminating the environment. Spores are very resistant and can live up to two years infecting animals and humans. They will attach to the skin and germinate producing hyphae, which will then grow in the dead, superficial layers of the skin, hair or nails. They secrete a 31.5 kDa keratinolytic subtilisin-like protease as well as three other subtilisin- like proteases (SUBs), SUB1, SUB2 and SUB3, which cause damage to the skin and hair follicle. Keratinolytic protease also provides the fungus nutrients by degrading keratin structures into easily absorbable metabolites. Infection leads to a hypersensitive reaction of the skin. The skin becomes inflamed causing the fungus to move away from the site to normal, uninfected skin. -
Diversity and Toxigenicity of Fungi That Cause Pineapple Fruitlet Core Rot
toxins Article Diversity and Toxigenicity of Fungi that Cause Pineapple Fruitlet Core Rot Bastien Barral 1,2,* , Marc Chillet 1,2, Anna Doizy 3 , Maeva Grassi 1, Laetitia Ragot 1, Mathieu Léchaudel 1,4, Noel Durand 1,5, Lindy Joy Rose 6 , Altus Viljoen 6 and Sabine Schorr-Galindo 1 1 Qualisud, Université de Montpellier, CIRAD, Montpellier SupAgro, Univ d’Avignon, Univ de La Reunion, F-34398 Montpellier, France; [email protected] (M.C.); [email protected] (M.G.); [email protected] (L.R.); [email protected] (M.L.); [email protected] (N.D.); [email protected] (S.S.-G.) 2 CIRAD, UMR Qualisud, F-97410 Saint-Pierre, Reunion, France 3 CIRAD, UMR PVBMT, F-97410 Saint-Pierre, Reunion, France; [email protected] 4 CIRAD, UMR Qualisud, F-97130 Capesterre-Belle-Eau, Guadeloupe, France 5 CIRAD, UMR Qualisud, F-34398 Montpellier, France 6 Department of Plant Pathology, Stellenbosch University, Private Bag X1, Matieland 7600, South Africa; [email protected] (L.J.R.); [email protected] (A.V.) * Correspondence: [email protected]; Tel.: +262-2-62-49-27-88 Received: 14 April 2020; Accepted: 14 May 2020; Published: 21 May 2020 Abstract: The identity of the fungi responsible for fruitlet core rot (FCR) disease in pineapple has been the subject of investigation for some time. This study describes the diversity and toxigenic potential of fungal species causing FCR in La Reunion, an island in the Indian Ocean. One-hundred-and-fifty fungal isolates were obtained from infected and healthy fruitlets on Reunion Island and exclusively correspond to two genera of fungi: Fusarium and Talaromyces. -
Molecular Phylogenetic and Scanning Electron Microscopical Analyses
Acta Biologica Hungarica 59 (3), pp. 365–383 (2008) DOI: 10.1556/ABiol.59.2008.3.10 MOLECULAR PHYLOGENETIC AND SCANNING ELECTRON MICROSCOPICAL ANALYSES PLACES THE CHOANEPHORACEAE AND THE GILBERTELLACEAE IN A MONOPHYLETIC GROUP WITHIN THE MUCORALES (ZYGOMYCETES, FUNGI) KERSTIN VOIGT1* and L. OLSSON2 1 Institut für Mikrobiologie, Pilz-Referenz-Zentrum, Friedrich-Schiller-Universität Jena, Neugasse 24, D-07743 Jena, Germany 2 Institut für Spezielle Zoologie und Evolutionsbiologie, Friedrich-Schiller-Universität Jena, Erbertstr. 1, D-07743 Jena, Germany (Received: May 4, 2007; accepted: June 11, 2007) A multi-gene genealogy based on maximum parsimony and distance analyses of the exonic genes for actin (act) and translation elongation factor 1 alpha (tef ), the nuclear genes for the small (18S) and large (28S) subunit ribosomal RNA (comprising 807, 1092, 1863, 389 characters, respectively) of all 50 gen- era of the Mucorales (Zygomycetes) suggests that the Choanephoraceae is a monophyletic group. The monotypic Gilbertellaceae appears in close phylogenetic relatedness to the Choanephoraceae. The mono- phyly of the Choanephoraceae has moderate to strong support (bootstrap proportions 67% and 96% in distance and maximum parsimony analyses, respectively), whereas the monophyly of the Choanephoraceae-Gilbertellaceae clade is supported by high bootstrap values (100% and 98%). This suggests that the two families can be joined into one family, which leads to the elimination of the Gilbertellaceae as a separate family. In order to test this hypothesis single-locus neighbor-joining analy- ses were performed on nuclear genes of the 18S, 5.8S, 28S and internal transcribed spacer (ITS) 1 ribo- somal RNA and the translation elongation factor 1 alpha (tef ) and beta tubulin (βtub) nucleotide sequences. -
S41467-021-25308-W.Pdf
ARTICLE https://doi.org/10.1038/s41467-021-25308-w OPEN Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota ✉ ✉ Luis Javier Galindo 1 , Purificación López-García 1, Guifré Torruella1, Sergey Karpov2,3 & David Moreira 1 Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living fla- gellated stages (zoospores) remain poorly known and their phylogenetic position is often 1234567890():,; unresolved. Recently, rRNA gene phylogenetic analyses of two atypical parasitic fungi with amoeboid zoospores and long kinetosomes, the sanchytrids Amoeboradix gromovi and San- chytrium tribonematis, showed that they formed a monophyletic group without close affinity with known fungal clades. Here, we sequence single-cell genomes for both species to assess their phylogenetic position and evolution. Phylogenomic analyses using different protein datasets and a comprehensive taxon sampling result in an almost fully-resolved fungal tree, with Chytridiomycota as sister to all other fungi, and sanchytrids forming a well-supported, fast-evolving clade sister to Blastocladiomycota. Comparative genomic analyses across fungi and their allies (Holomycota) reveal an atypically reduced metabolic repertoire for sanchy- trids. We infer three main independent flagellum losses from the distribution of over 60 flagellum-specific proteins across Holomycota. Based on sanchytrids’ phylogenetic position and unique traits, we propose the designation of a novel phylum, Sanchytriomycota. In addition, our results indicate that most of the hyphal morphogenesis gene repertoire of multicellular fungi had already evolved in early holomycotan lineages. 1 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France. 2 Zoological Institute, Russian Academy of Sciences, St. ✉ Petersburg, Russia. 3 St. -
Thermophilic Carboxydotrophs and Their Applications in Biotechnology Springerbriefs in Microbiology
SPRINGER BRIEFS IN MICROBIOLOGY EXTREMOPHILIC BACTERIA Sonia M. Tiquia-Arashiro Thermophilic Carboxydotrophs and their Applications in Biotechnology SpringerBriefs in Microbiology Extremophilic Bacteria Series editors Sonia M. Tiquia-Arashiro, Dearborn, MI, USA Melanie Mormile, Rolla, MO, USA More information about this series at http://www.springer.com/series/11917 Sonia M. Tiquia-Arashiro Thermophilic Carboxydotrophs and their Applications in Biotechnology 123 Sonia M. Tiquia-Arashiro Department of Natural Sciences University of Michigan Dearborn, MI USA ISSN 2191-5385 ISSN 2191-5393 (electronic) ISBN 978-3-319-11872-7 ISBN 978-3-319-11873-4 (eBook) DOI 10.1007/978-3-319-11873-4 Library of Congress Control Number: 2014951696 Springer Cham Heidelberg New York Dordrecht London © The Author(s) 2014 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Exempted from this legal reservation are brief excerpts in connection with reviews or scholarly analysis or material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Duplication of this publication or parts thereof is permitted only under the provisions of the Copyright Law of the Publisher’s location, in its current version, and permission for use must always be obtained from Springer. -
Brevibacterium Sandarakinum Sp. Nov., Isolated from a Wall of an Indoor Environment
This is an author manuscript that has been accepted for publication in International Journal of Systematic and Evolutionary Microbiology, copyright Society for General Microbiology, but has not been copy-edited, formatted or proofed. Cite this article as appearing in International Journal of Systematic and Evolutionary Microbiology. This version of the manuscript may not be duplicated or reproduced, other than for personal use or within the rule of ‘Fair Use of Copyrighted Materials’ (section 17, Title 17, US Code), without permission from the copyright owner, Society for General Microbiology. The View metadata, citation and similar papers at core.ac.uk brought to you by CORE Society for General Microbiology disclaims any responsibility or liability for errors or omissions in this version of the manuscript or in any version derived from it by any other parties. The final copy-edited, published article, which is the version of record, can be found at http://ijs.sgmjournals.org,provided by Giessener Elektronische and is freely Bibliothek available without a subscription 24 months after publication. First published in: Int J Syst Evol Microbiol, 2009. 60(4) 909-913. doi:10.1099/ijs.0.014100-0 Brevibacterium sandarakinum sp. nov., isolated from a wall of an indoor environment Peter Ka¨mpfer,1 Jenny Scha¨fer,1 Nicole Lodders1 and Hans-Ju¨rgen Busse2 Correspondence 1Institut fu¨r Angewandte Mikrobiologie, Justus-Liebig-Universita¨t Giessen, D-35392 Giessen, Peter Ka¨mpfer Germany [email protected] 2Institut fu¨r Bakteriologie, Mykologie und Hygiene, Veterina¨rmedizinische Universita¨t, A-1210 Wien, giessen.de Austria A Gram-stain-positive, rod-shaped, non-endospore-forming, orange-pigmented (coloured) actinobacterium (01-Je-003T) was isolated from the wall of an indoor environment primarily colonized with moulds. -
Taxonomy and Evolution of Aspergillus, Penicillium and Talaromyces in the Omics Era – Past, Present and Future
Computational and Structural Biotechnology Journal 16 (2018) 197–210 Contents lists available at ScienceDirect journal homepage: www.elsevier.com/locate/csbj Taxonomy and evolution of Aspergillus, Penicillium and Talaromyces in the omics era – Past, present and future Chi-Ching Tsang a, James Y.M. Tang a, Susanna K.P. Lau a,b,c,d,e,⁎, Patrick C.Y. Woo a,b,c,d,e,⁎ a Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong b Research Centre of Infection and Immunology, The University of Hong Kong, Hong Kong c State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong, Hong Kong d Carol Yu Centre for Infection, The University of Hong Kong, Hong Kong e Collaborative Innovation Centre for Diagnosis and Treatment of Infectious Diseases, The University of Hong Kong, Hong Kong article info abstract Article history: Aspergillus, Penicillium and Talaromyces are diverse, phenotypically polythetic genera encompassing species im- Received 25 October 2017 portant to the environment, economy, biotechnology and medicine, causing significant social impacts. Taxo- Received in revised form 12 March 2018 nomic studies on these fungi are essential since they could provide invaluable information on their Accepted 23 May 2018 evolutionary relationships and define criteria for species recognition. With the advancement of various biological, Available online 31 May 2018 biochemical and computational technologies, different approaches have been adopted for the taxonomy of Asper- gillus, Penicillium and Talaromyces; for example, from traditional morphotyping, phenotyping to chemotyping Keywords: Aspergillus (e.g. lipotyping, proteotypingand metabolotyping) and then mitogenotyping and/or phylotyping. Since different Penicillium taxonomic approaches focus on different sets of characters of the organisms, various classification and identifica- Talaromyces tion schemes would result. -
Diversity of Geophilic Dermatophytes Species in the Soils of Iran; the Significant Preponderance of Nannizzia Fulva
Journal of Fungi Article Diversity of Geophilic Dermatophytes Species in the Soils of Iran; The Significant Preponderance of Nannizzia fulva Simin Taghipour 1, Mahdi Abastabar 2, Fahimeh Piri 3, Elham Aboualigalehdari 4, Mohammad Reza Jabbari 2, Hossein Zarrinfar 5 , Sadegh Nouripour-Sisakht 6, Rasoul Mohammadi 7, Bahram Ahmadi 8, Saham Ansari 9, Farzad Katiraee 10 , Farhad Niknejad 11 , Mojtaba Didehdar 12, Mehdi Nazeri 13, Koichi Makimura 14 and Ali Rezaei-Matehkolaei 3,4,* 1 Department of Medical Parasitology and Mycology, Faculty of Medicine, Shahrekord University of Medical Sciences, Shahrekord 88157-13471, Iran; [email protected] 2 Invasive Fungi Research Center, Department of Medical Mycology and Parasitology, School of Medicine, Mazandaran University of Medical Sciences, Sari 48157-33971, Iran; [email protected] (M.A.); [email protected] (M.R.J.) 3 Infectious and Tropical Diseases Research Center, Health Research Institute, Ahvaz Jundishapur University of Medical Sciences, Ahvaz 61357-15794, Iran; [email protected] 4 Department of Medical Mycology, School of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz 61357-15794, Iran; [email protected] 5 Allergy Research Center, Mashhad University of Medical Sciences, Mashhad 91766-99199, Iran; [email protected] 6 Medicinal Plants Research Center, Yasuj University of Medical Sciences, Yasuj 75919-94799, Iran; [email protected] Citation: Taghipour, S.; Abastabar, M.; 7 Department of Medical Parasitology and Mycology, School of Medicine, Infectious Diseases and Tropical Piri, F.; Aboualigalehdari, E.; Jabbari, Medicine Research Center, Isfahan University of Medical Sciences, Isfahan 81746-73461, Iran; M.R.; Zarrinfar, H.; Nouripour-Sisakht, [email protected] 8 S.; Mohammadi, R.; Ahmadi, B.; Department of Medical Laboratory Sciences, Faculty of Paramedical, Bushehr University of Medical Sciences, Bushehr 75187-59577, Iran; [email protected] Ansari, S.; et al. -
Lycopene Overproduction in Saccharomyces Cerevisiae Through
Chen et al. Microb Cell Fact (2016) 15:113 DOI 10.1186/s12934-016-0509-4 Microbial Cell Factories RESEARCH Open Access Lycopene overproduction in Saccharomyces cerevisiae through combining pathway engineering with host engineering Yan Chen1,2, Wenhai Xiao1,2* , Ying Wang1,2, Hong Liu1,2, Xia Li1,2 and Yingjin Yuan1,2 Abstract Background: Microbial production of lycopene, a commercially and medically important compound, has received increasing concern in recent years. Saccharomyces cerevisiae is regarded as a safer host for lycopene production than Escherichia coli. However, to date, the lycopene yield (mg/g DCW) in S. cerevisiae was lower than that in E. coli and did not facilitate downstream extraction process, which might be attributed to the incompatibility between host cell and heterologous pathway. Therefore, to achieve lycopene overproduction in S. cerevisiae, both host cell and heterologous pathway should be delicately engineered. Results: In this study, lycopene biosynthesis pathway was constructed by integration of CrtE, CrtB and CrtI in S. cerevisiae CEN.PK2. When YPL062W, a distant genetic locus, was deleted, little acetate was accumulated and approxi- mately 100 % increase in cytosolic acetyl-CoA pool was achieved relative to that in parental strain. Through screening CrtE, CrtB and CrtI from diverse species, an optimal carotenogenic enzyme combination was obtained, and CrtI from Blakeslea trispora (BtCrtI) was found to have excellent performance on lycopene production as well as lycopene pro- portion in carotenoid. Then, the expression level of BtCrtI was fine-tuned and the effect of cell mating types was also evaluated. Finally, potential distant genetic targets (YJL064W, ROX1, and DOS2) were deleted and a stress-responsive transcription factor INO2 was also up-regulated. -
Mycological Society of America Newsletter - June
MYCOLOGICAL SOCIETY OF A~I~RI~A JUNE IS62 - VOLa XI11 NO. I MYCOLOGICAL SOCIETY OF AMERICA NEWSLETTER - JUNE. TB62 VOL. XI11 NC Rdi ted by? Ri.chard ,,. -2n jamin me rreslaenTmsLet-cer. The Annual Meeting-1962, Oregon Stczte Ur:dversi ty. -- - The Annuel ay-1962, Oregon State University. Mycologic ciety Fellowship Election ,, ,-ficers, VI. Myc ologia, VII. Membership. Sustaining Members. IX. Publications. Research Materials. XI. Major Research Projects. XII. Myc ologic a1 Instruction. Assistantships , Fellowships, and Scholarships. XIV. Mycologists Available. Vacancies for Mycologically Trained Personnel. XVI . Recent Appointments and Transf ers . News of General Interest. XVIII. Other News about Members. XIX. Visiting Scientists. Honors, Degrees, Promotions, Invitational Lectures. The F, - F2 Generations. Rancho Santa Ana Botanic Garden Claremont , C a3if ornia I. THE PRESIDENT'S LETTER To the Members of the Mycological Society of America: When thinking back to my days as a graduate student, this is the least likely position I ever imagined I would be inJ It is indeed a real pleasure to serve the Mycological Society to the best of my ability in this highest and most coveted position. It has been most gratifying to see the enthusiastic response among members when asked to serve in various capacities in the Mycological Society during this year. There is real evidence of a tremendous re- vitalization during the past year. It has been through the laborious efforts of Dr. lark ~ogerson,serving as Acting Editor of M~cologia, the past officers, and the cooperative patience of our members that the ~ycoio~icalsociety has really-gone forward. It is a fine tribute to Clark to have the Council and the Editorial Board unanimously request him to serve as Editor. -
1 1 2 3 4 Early Diverging Insect-Pathogenic Fungi of the Order
G3: Genes|Genomes|Genetics Early Online, published on August 15, 2018 as doi:10.1534/g3.118.200656 1 2 3 4 5 Early diverging insect-pathogenic fungi of the order Entomophthorales possess diverse 6 and unique subtilisin-like serine proteases 7 8 9 Authors 10 Jonathan A. Arnesen1, Joanna Malagocka1, Andrii Gryganskyi2, Igor V. Grigoriev3, Kerstin 11 Voigt4,5, Jason E. Stajich6 (orcid 0000-0002-7591-0020) and Henrik H. De Fine Licht1* 12 (orcid 0000-0003-3326-5729) 13 14 15 1Section for Organismal Biology, Department of Plant and Environmental Sciences, 16 University of Copenhagen, Thorvaldsenvej 40, 1871 Frederiksberg, Denmark. 17 2Department of Biology, Duke University, Durham, North Carolina, USA. 18 3US Department of Energy Joint Genome Institute, Walnut Creek, California, USA. 19 4Jena Microbial Resource Collection (JMRC), Leibniz Institute for Natural Product Research 20 and Infection Biology - Hans Knoell Institute, Adolf-Reichwein-Str.23, 07745 Jena, 21 Germany. 22 5Institute of Microbiology, Friedrich Schiller University, Neugasse 25, 07743 Jena, Germany. 23 6Department of Plant Pathology and Microbiology, University of California, Riverside, 24 California, USA. 25 26 27 *Author for correspondence: 28 Section for Organismal Biology, Department of Plant and Environmental Sciences, 29 University of Copenhagen, Thorvaldsenvej 40, 1871 Frederiksberg, Denmark. Email: 30 [email protected], Tel: +45 35320097 31 32 1 © The Author(s) 2013. Published by the Genetics Society of America. 33 Abstract 34 Insect-pathogenic fungi use subtilisin-like serine proteases (SLSPs) to degrade chitin- 35 associated proteins in the insect procuticle. Most insect-pathogenic fungi in the order 36 Hypocreales (Ascomycota) are generalist species with a broad host-range, and most species 37 possess a high number of SLSPs. -
Phylogeny and Nomenclature of the Genus Talaromyces and Taxa Accommodated in Penicillium Subgenus Biverticillium
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector available online at www.studiesinmycology.org StudieS in Mycology 70: 159–183. 2011. doi:10.3114/sim.2011.70.04 Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium R.A. Samson1, N. Yilmaz1,6, J. Houbraken1,6, H. Spierenburg1, K.A. Seifert2, S.W. Peterson3, J. Varga4 and J.C. Frisvad5 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada, 3Bacterial Foodborne Pathogens and Mycology Research Unit, National Center for Agricultural Utilization Research, 1815 N. University Street, Peoria, IL 61604, U.S.A., 4Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közép fasor 52, Hungary, 5Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800, Kgs. Lyngby, Denmark; 6Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. *Correspondence: R.A. Samson, [email protected] Abstract: The taxonomic history of anamorphic species attributed to Penicillium subgenus Biverticillium is reviewed, along with evidence supporting their relationship with teleomorphic species classified inTalaromyces. To supplement previous conclusions based on ITS, SSU and/or LSU sequencing that Talaromyces and subgenus Biverticillium comprise a monophyletic group that is distinct from Penicillium at the generic level, the phylogenetic relationships of these two groups with other genera of Trichocomaceae was further studied by sequencing a part of the RPB1 (RNA polymerase II largest subunit) gene.