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(Rhabditophora:Platyhelminthes) Found in the Sea Cucumber &L
SPC Beche-de-mer Information Bulletin #37 – March 2017 75 New host for the parasitic worm Anoplodium sp. (Rhabditophora: Platyhelminthes) found in the sea cucumber Isostichopus fuscus (Holothuroidea: Echinodermata) Jean-François Hamel,1 Igor Eeckhaut2 and Annie Mercier3 Abstract A flatworm was discovered inside the coelomic cavity of the commercial sea cucumber Isostichopus fuscus along the Pacific coast of Mexico. Based on morphological and genetic evidence, it was determined to be Anoplodium sp. belonging to class Rhabditophora. Thus, the sea cucumber I. fuscus constitutes a new host. The flatworms were consistently found on the surface of the haemal vessels and the rete mirabile of 92% of the sea cucumbers sampled along the cost of Mazatlan, and 88% of the sea cucumbers collected in the Sea of Cortez. The infestation rate varied from 1 to 725 flatworms per individual, in both male and female sea cucumbers. When more than ~120 Anoplodium sp. were counted in a single host, the gonads of the latter were either very small (≤1.2 g wet weight, or GI <0.26) or absent, suggesting that the flatworm could be detrimental to I. fuscus and be considered parasitic. Combined with the threat of overfishing throughout its distribution range, the discovery of this parasite could seal the fate of I. fuscus in certain regions of the eastern Pacific. Introduction the associates of echinoderms, Jangoux (1987, 1990) described 58 Rhabdocoela. Sea cucumbers are known to host a variety of asso- ciated species that may dwell externally — on their Within the phylum Platyhelminthes, members of body wall, around their mouth, and among their the order Rhabdocoela, and especially the genus tentacles — or internally, inside the respiratory tree, Anoplodium, have been reported from various spe- intestines, or coelomic cavity (Jangoux 1987; Eeck- cies of sea cucumbers spreading from polar to haut et al. -
Conservation and Diversification of Small RNA Pathways Within Flatworms Santiago Fontenla1, Gabriel Rinaldi2, Pablo Smircich1,3 and Jose F
Fontenla et al. BMC Evolutionary Biology (2017) 17:215 DOI 10.1186/s12862-017-1061-5 RESEARCH ARTICLE Open Access Conservation and diversification of small RNA pathways within flatworms Santiago Fontenla1, Gabriel Rinaldi2, Pablo Smircich1,3 and Jose F. Tort1* Abstract Background: Small non-coding RNAs, including miRNAs, and gene silencing mediated by RNA interference have been described in free-living and parasitic lineages of flatworms, but only few key factors of the small RNA pathways have been exhaustively investigated in a limited number of species. The availability of flatworm draft genomes and predicted proteomes allowed us to perform an extended survey of the genes involved in small non-coding RNA pathways in this phylum. Results: Overall, findings show that the small non-coding RNA pathways are conserved in all the analyzed flatworm linages; however notable peculiarities were identified. While Piwi genes are amplified in free-living worms they are completely absent in all parasitic species. Remarkably all flatworms share a specific Argonaute family (FL-Ago) that has been independently amplified in different lineages. Other key factors such as Dicer are also duplicated, with Dicer-2 showing structural differences between trematodes, cestodes and free-living flatworms. Similarly, a very divergent GW182 Argonaute interacting protein was identified in all flatworm linages. Contrasting to this, genes involved in the amplification of the RNAi interfering signal were detected only in the ancestral free living species Macrostomum lignano. We here described all the putative small RNA pathways present in both free living and parasitic flatworm lineages. Conclusion: These findings highlight innovations specifically evolved in platyhelminths presumably associated with novel mechanisms of gene expression regulation mediated by small RNA pathways that differ to what has been classically described in model organisms. -
Towards a Management Hierarchy (Classification) for the Catalogue of Life
TOWARDS A MANAGEMENT HIERARCHY (CLASSIFICATION) FOR THE CATALOGUE OF LIFE Draft Discussion Document Rationale The Catalogue of Life partnership, comprising Species 2000 and ITIS (Integrated Taxonomic Information System), has the goal of achieving a comprehensive catalogue of all known species on Earth by the year 2011. The actual number of described species (after correction for synonyms) is not presently known but estimates suggest about 1.8 million species. The collaborative teams behind the Catalogue of Life need an agreed standard classification for these 1.8 million species, i.e. a working hierarchy for management purposes. This discussion document is intended to highlight some of the issues that need clarifying in order to achieve this goal beyond what we presently have. Concerning Classification Life’s diversity is classified into a hierarchy of categories. The best-known of these is the Kingdom. When Carl Linnaeus introduced his new “system of nature” in the 1750s ― Systema Naturae per Regna tria naturae, secundum Classes, Ordines, Genera, Species …) ― he recognised three kingdoms, viz Plantae, Animalia, and a third kingdom for minerals that has long since been abandoned. As is evident from the title of his work, he introduced lower-level taxonomic categories, each successively nested in the other, named Class, Order, Genus, and Species. The most useful and innovative aspect of his system (which gave rise to the scientific discipline of Systematics) was the use of the binominal, comprising genus and species, that uniquely identified each species of organism. Linnaeus’s system has proven to be robust for some 250 years. The starting point for botanical names is his Species Plantarum, published in 1753, and that for zoological names is the tenth edition of the Systema Naturae published in 1758. -
Advances in Fasciola Hepatica Research Using -Omics Technologies
Advances in Fasciola hepatica research using -omics technologies Cwiklinski, K., & Dalton, J. (2018). Advances in Fasciola hepatica research using -omics technologies. International Journal for Parasitology. https://doi.org/10.1016/j.ijpara.2017.12.001 Published in: International Journal for Parasitology Document Version: Peer reviewed version Queen's University Belfast - Research Portal: Link to publication record in Queen's University Belfast Research Portal Publisher rights Copyright 2018 Elsevier. This manuscript is distributed under a Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits distribution and reproduction for non-commercial purposes, provided the author and source are cited. General rights Copyright for the publications made accessible via the Queen's University Belfast Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The Research Portal is Queen's institutional repository that provides access to Queen's research output. Every effort has been made to ensure that content in the Research Portal does not infringe any person's rights, or applicable UK laws. If you discover content in the Research Portal that you believe breaches copyright or violates any law, please contact [email protected]. Download date:29. Sep. 2021 1 Advances in Fasciola hepatica research using –omics technologies 2 3 4 Krystyna Cwiklinski1 and John P. Dalton1,2. 5 6 7 1 – School of Biological Sciences, Medical Biology Centre, Queen’s University 8 Belfast, Belfast, Northern Ireland, UK 9 2 – Institute for Global Food Security (IGFS), Queen’s University Belfast, Belfast, 10 Northern Ireland, UK 11 12 Corresponding Author. -
Is the Turbellaria Polyphyletic?
Is the Turbellaria polyphyletic? Julian P. S. Smith, III,' Seth Teyler' & Reinhard M . Rieger2 'Department of Zoology, University of Maine, Orono, ME 04469, USA 2Department of Biology, University of North Carolina, Chapel Hill, NC 27514, USA Keywords: Tirbellaria, phylogenetic systematics, Platyhelminthes, polyphyly, ultrastructure, epidermis, cilia Abstract Within the last two decades, syntheses of both light-microscopic and ultrastructural characters have shown that there are three well-defined monophyletic groups within the Platyhelminthes : 1) the Catenulidale, 2) the Nemertodermatida-Acoela, and 3) the Haplopharyngida-Macrostomida-Polycladida-Neoophora (+ parasit- ic platyhelminth classes) . However, the relationships among these three groups are problematic . The possible apomorphies that would unite them are either not true homologues (i.e. frontal organ), are mutually conflict- ing (i.e. 9+1 axoneme in spermatozoa vs . biflagellate spermatozoa, epidermal ciliary rootlet structure, and protonephridia), or are unrooted with any outgroup and hence untestable or uncertain as apomorphies (pro- tonephridia, mode of epidermal replacement, absence of accessory centrioles on cilia) . The chief obstacle to deciphering the relationships of these groups is the lack of information on them ; presently available infor- mation is insufficient to test potential synapomorphies and insufficient also to allow agreement upon a nar- rowly defined outgroup for the Turbellaria . A view consistent with the present evidence (and admittedly an unsatisfactory -
The Free-Living Flatworm Macrostomum Lignano
ARTICLE IN PRESS Experimental Gerontology xxx (2009) xxx–xxx Contents lists available at ScienceDirect Experimental Gerontology journal homepage: www.elsevier.com/locate/expgero Review The free-living flatworm Macrostomum lignano: A new model organism for ageing research Stijn Mouton a,*, Maxime Willems a, Bart P. Braeckman b, Bernhard Egger c, Peter Ladurner c, Lukas Schärer d, Gaetan Borgonie a a Nematology Unit, Department of Biology, Ghent University, Ledeganckstraat 35, 9000 Ghent, Belgium b Laboratory for Ageing Physiology and Molecular Evolution, Department of Biology, Ghent University, Ledeganckstraat 35, 9000 Ghent, Belgium c Ultrastructural Research and Evolutionary Biology, Institute of Zoology, University of Innsbruck, Technikerstrasse 25, 6020 Innsbruck, Austria d Evolutionary Biology, Zoological Institute, University of Basel, Vesalgasse 1, 4051 Basel, Switzerland article info abstract Article history: To study the several elements and causes of ageing, diverse model organisms and methodologies are Received 5 September 2008 required. The most frequently used models are Saccharomyces cerevisiae, Caenorhabditis elegans, Drosoph- Received in revised form 6 November 2008 ila melanogaster and rodents. All have their advantages and disadvantages and allow studying particular Accepted 28 November 2008 aspects of the ageing process. During the last few years, several ageing studies focussed on stem cells and Available online xxxx their role in tissue homeostasis. Here we present a new model organism which can study this relation where other model systems fail. The flatworm Macrostomum lignano possesses a dynamic population Keywords: of likely totipotent somatic stem cells known as neoblasts. Several characteristics qualify M. lignano as Flatworm a suitable model system for ageing studies in general and more specifically for gaining more insight in Macrostomum lignano Ageing the causal relation between stem cells, ageing and rejuvenation. -
A Phylogenetic Analysis of Myosin Heavy Chain Type II Sequences Corroborates That Acoela and Nemertodermatida Are Basal Bilaterians
A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians I. Ruiz-Trillo*, J. Paps*, M. Loukota†, C. Ribera†, U. Jondelius‡, J. Bagun˜ a` *, and M. Riutort*§ *Departament de Gene`tica and †Departament de Biologia Animal, Universitat Barcelona, Av. Diagonal, 645 08028 Barcelona, Spain; and ‡Evolutionary Biology Centre, University Uppsala, Norbyva¨gen 18D, 752 36 Uppsala, Sweden Communicated by James W. Valentine, University of California, Berkeley, CA, June 28, 2002 (received for review April 15, 2002) Bilateria are currently subdivided into three superclades: Deuter- across all bilaterians. However different, this scheme also suited ostomia, Ecdysozoa, and Lophotrochozoa. Within this new taxo- alternative hypotheses such as the ‘‘set-aside cells’’ theory (13, nomic frame, acoelomate Platyhelminthes, for a long time held to 14) and the colonial ancestor theory (15). be basal bilaterians, are now considered spiralian lophotrochozo- This new status quo was soon questioned. A SSU-based study ans. However, recent 18S rDNA [small subunit (SSU)] analyses have using a large set of Platyhelminthes acoels and other metazoans shown Platyhelminthes to be polyphyletic with two of its orders, showed acoels to be the extant earliest branching bilaterians the Acoela and the Nemertodermatida, as the earliest extant (16), turning Platyhelminthes into a polyphyletic group. In bilaterians. To corroborate such position and avoid the criticisms of addition, Jenner (17) noted that phylogenies put forward to back saturation and long-branch effects thrown on the SSU molecule, the new metazoan molecular trees (10–12, 18) were incomplete we have searched for independent molecular data bearing good and heavily pruned. -
Genome and Transcriptome of the Regeneration- Competent Flatworm, Macrostomum Lignano
Genome and transcriptome of the regeneration- competent flatworm, Macrostomum lignano Kaja Wasika,1, James Gurtowskia,1, Xin Zhoua,b, Olivia Mendivil Ramosa, M. Joaquina Delása,c, Giorgia Battistonia,c, Osama El Demerdasha, Ilaria Falciatoria,c, Dita B. Vizosod, Andrew D. Smithe, Peter Ladurnerf, Lukas Schärerd, W. Richard McCombiea, Gregory J. Hannona,c,2, and Michael Schatza,2 aWatson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724; bMolecular and Cellular Biology Graduate Program, Stony Brook University, NY 11794; cCancer Research UK Cambridge Institute, University of Cambridge, Cambridge CB2 0RE, United Kingdom; dDepartment of Evolutionary Biology, Zoological Institute, University of Basel, 4051 Basel, Switzerland; eDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, CA 90089; and fDepartment of Evolutionary Biology, Institute of Zoology and Center for Molecular Biosciences Innsbruck, University of Innsbruck, A-6020 Innsbruck, Austria Contributed by Gregory J. Hannon, August 23, 2015 (sent for review June 25, 2015; reviewed by Ian Korf and Robert E. Steele) The free-living flatworm, Macrostomum lignano has an impressive of all cells (15), and have a very high proliferation rate (16, 17). Of regenerative capacity. Following injury, it can regenerate almost M. lignano neoblasts, 89% enter S-phase every 24 h (18). This high an entirely new organism because of the presence of an abundant mitotic activity results in a continuous stream of progenitors, somatic stem cell population, the neoblasts. This set of unique replacing tissues that are likely devoid of long-lasting, differentiated properties makes many flatworms attractive organisms for study- cell types (18). This makes M. -
Animal Phylogeny and the Ancestry of Bilaterians: Inferences from Morphology and 18S Rdna Gene Sequences
EVOLUTION & DEVELOPMENT 3:3, 170–205 (2001) Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences Kevin J. Peterson and Douglas J. Eernisse* Department of Biological Sciences, Dartmouth College, Hanover NH 03755, USA; and *Department of Biological Science, California State University, Fullerton CA 92834-6850, USA *Author for correspondence (email: [email protected]) SUMMARY Insight into the origin and early evolution of the and protostomes, with ctenophores the bilaterian sister- animal phyla requires an understanding of how animal group, whereas 18S rDNA suggests that the root is within the groups are related to one another. Thus, we set out to explore Lophotrochozoa with acoel flatworms and gnathostomulids animal phylogeny by analyzing with maximum parsimony 138 as basal bilaterians, and with cnidarians the bilaterian sister- morphological characters from 40 metazoan groups, and 304 group. We suggest that this basal position of acoels and gna- 18S rDNA sequences, both separately and together. Both thostomulids is artifactal because for 1000 replicate phyloge- types of data agree that arthropods are not closely related to netic analyses with one random sequence as outgroup, the annelids: the former group with nematodes and other molting majority root with an acoel flatworm or gnathostomulid as the animals (Ecdysozoa), and the latter group with molluscs and basal ingroup lineage. When these problematic taxa are elim- other taxa with spiral cleavage. Furthermore, neither brachi- inated from the matrix, the combined analysis suggests that opods nor chaetognaths group with deuterostomes; brachiopods the root lies between the deuterostomes and protostomes, are allied with the molluscs and annelids (Lophotrochozoa), and Ctenophora is the bilaterian sister-group. -
Atp8 Is in the Ground Pattern of Flatworm Mitochondrial Genomes Bernhard Egger1* , Lutz Bachmann2 and Bastian Fromm3
Egger et al. BMC Genomics (2017) 18:414 DOI 10.1186/s12864-017-3807-2 RESEARCH ARTICLE Open Access Atp8 is in the ground pattern of flatworm mitochondrial genomes Bernhard Egger1* , Lutz Bachmann2 and Bastian Fromm3 Abstract Background: To date, mitochondrial genomes of more than one hundred flatworms (Platyhelminthes) have been sequenced. They show a high degree of similarity and a strong taxonomic bias towards parasitic lineages. The mitochondrial gene atp8 has not been confidently annotated in any flatworm sequenced to date. However, sampling of free-living flatworm lineages is incomplete. We addressed this by sequencing the mitochondrial genomes of the two small-bodied (about 1 mm in length) free-living flatworms Stenostomum sthenum and Macrostomum lignano as the first representatives of the earliest branching flatworm taxa Catenulida and Macrostomorpha respectively. Results: We have used high-throughput DNA and RNA sequence data and PCR to establish the mitochondrial genome sequences and gene orders of S. sthenum and M. lignano. The mitochondrial genome of S. sthenum is 16,944 bp long and includes a 1,884 bp long inverted repeat region containing the complete sequences of nad3, rrnS, and nine tRNA genes. The model flatworm M. lignano has the smallest known mitochondrial genome among free- living flatworms, with a length of 14,193 bp. The mitochondrial genome of M. lignano lacks duplicated genes, however, tandem repeats were detected in a non-coding region. Mitochondrial gene order is poorly conserved in flatworms, only a single pair of adjacent ribosomal or protein-coding genes – nad4l-nad4 – was found in S. sthenum and M. -
Proteomic Insights Into the Biology of the Most Important Foodborne Parasites in Europe
foods Review Proteomic Insights into the Biology of the Most Important Foodborne Parasites in Europe Robert Stryi ´nski 1,* , El˙zbietaŁopie ´nska-Biernat 1 and Mónica Carrera 2,* 1 Department of Biochemistry, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, 10-719 Olsztyn, Poland; [email protected] 2 Department of Food Technology, Marine Research Institute (IIM), Spanish National Research Council (CSIC), 36-208 Vigo, Spain * Correspondence: [email protected] (R.S.); [email protected] (M.C.) Received: 18 August 2020; Accepted: 27 September 2020; Published: 3 October 2020 Abstract: Foodborne parasitoses compared with bacterial and viral-caused diseases seem to be neglected, and their unrecognition is a serious issue. Parasitic diseases transmitted by food are currently becoming more common. Constantly changing eating habits, new culinary trends, and easier access to food make foodborne parasites’ transmission effortless, and the increase in the diagnosis of foodborne parasitic diseases in noted worldwide. This work presents the applications of numerous proteomic methods into the studies on foodborne parasites and their possible use in targeted diagnostics. Potential directions for the future are also provided. Keywords: foodborne parasite; food; proteomics; biomarker; liquid chromatography-tandem mass spectrometry (LC-MS/MS) 1. Introduction Foodborne parasites (FBPs) are becoming recognized as serious pathogens that are considered neglect in relation to bacteria and viruses that can be transmitted by food [1]. The mode of infection is usually by eating the host of the parasite as human food. Many of these organisms are spread through food products like uncooked fish and mollusks; raw meat; raw vegetables or fresh water plants contaminated with human or animal excrement. -
Acari: Alicorhagiidae and Platyhelminthes: Prorhynchidae) Reported for the Hungarian Fauna from Leaf Litter in the Bükk Mountains
Opusc. Zool. Budapest, 2016, 47(2): 131–136 Two new families (Acari: Alicorhagiidae and Platyhelminthes: Prorhynchidae) reported for the Hungarian fauna From leaf litter in the Bükk Mountains W.P. PFLIEGLER1,2 & S.J. BOLTON3 1Walter P. Pfliegler, Dept. of Biotechnology and Microbiology, University of Debrecen, H4032 Debrecen, Egyetem tér 1., Hungary. E-mail: [email protected]. 2Postdoctoral Fellowship Program of the Hungarian Academy of Sciences (MTA), Hungary 3Samuel J. Bolton, Department of Evolution, Ecology and Organismal Biology, The Ohio State University, 1315 Kinnear Road, Columbus, Ohio, USA. E-mail: [email protected] Abstract. Two new members of the Hungarian fauna are reported, both of them were collected in beech forest leaf litter in the Bükk Mountains, North-East Hungary: Alicorhagia fragilis Berlese, 1910 (Arthropoda: Arachnida: Acari: Sarcopti- formes: Endeostigmata: Alicorhagiidae) and Geocentrophora baltica (Kennel, 1883) (Platyhelminthes: Rhabditophora: Trepaxonemata: Amplimatricata: 'Lecithoepitheliata': Prorhynchida: Prorhynchidae). The families Alicorhagiidae and Prorhynchidae both represent new taxa in the fauna of the country. Keywords. Lecithoepitheliata, Endeostigmata, soil fauna, new record, Bükk National Park INTRODUCTION the surrounding slopes flowing through it (perso- nal observations). he authors report on the finding of two in- T teresting species of soil biota representing Endeostigmata is among the most enigmatic groups that are relatively under-studied in the groups of mites (along with the Sphaerolichina) Hungarian fauna. Both species represent new fa- and their distribution records are still very scarce. milies for Hungary and were collected from beech The taxon Endeostigmata includes mites with nu- leaf litter in the Bükk National Park, North-East merous primitive (plesiomorphic) characters and Hungary, from the exact same location where a they are probably paraphyletic (Walter 2009).