Epoxidation of Terpenes
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The Oxidation of Secondary Alcohols by Dimethyldioxirane: Re-Examination of Kinetic Isotope Effects
Heterocycl. Commun., Vol. 16(4-6), pp. 217–220, 2010 • Copyright © by Walter de Gruyter • Berlin • New York. DOI 10.1515/HC.2010.016 Preliminary Communication The oxidation of secondary alcohols by dimethyldioxirane: re-examination of kinetic isotope effects A lfons L. Baumstark *, P edro C. Vasquez, Mark 1991 ; Denmark and Wu , 1998 ; Frohn et al. , 1998 ) or in an Cunningham a and Pamela M. Leggett-Robinson b isolated solution (Murray and Jeyaraman , 1985 ; Baumstark and McCloskey , 1987 ). The epoxidation of alkenes and het- Department of Chemistry , Center for Biotech and Drug eroatom oxidation by isolated solutions of 1 in acetone have Design, Georgia State University, Atlanta, Georgia been extensively investigated (Murray and Jeyaraman , 1985 ; 30302-4098 , USA Baumstark and McCloskey , 1987 ; Baumstark and Vasquez , * Corresponding author 1988 ; Winkeljohn et al. , 2004 , 2007 ). Dioxiranes can also e-mail: [email protected] insert oxygen into unactivated CH bonds of alkanes (Murray et al. , 1986 ). However, this important reaction generally requires a dioxirane more reactive than dimethyldioxirane to Abstract be of utility (Kuck et al. , 1994 ; D ’ Accolti et al., 2003 ). The oxidation of secondary alcohols by dimethyldioxirane, 1 , to The kinetic isotope effects for the oxidation of a series of ketones can be achieved in high yield under mild conditions deuterated isopropanols and α -trideuteromethyl benzyl alco- and with convenient reaction times (Kovac and Baumstark , hol by dimethyldioxirane ( 1 ) to the corresponding ketones 1994 ; Cunningham et al. , 1998; Baumstark, 1999 ). Two were determined in dried acetone at 23 ° C. A primary kinetic mechanistic extremes have been proposed for secondary alco- isotope effect (PKIE) of 5.2 for the oxidation of isopropyl- hol oxidation by 1 : a) concerted insertion (Mello et al. -
Estimating the Densities of Benzene-Derived Explosives Using Atomic Volumes
Journal of Molecular Modeling (2018) 24: 50 https://doi.org/10.1007/s00894-018-3588-9 ORIGINAL PAPER Estimating the densities of benzene-derived explosives using atomic volumes Vikas D. Ghule1 & Ayushi Nirwan1 & Alka Devi1 Received: 7 November 2017 /Accepted: 8 January 2018 /Published online: 9 February 2018 # Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract The application of average atomic volumes to predict the crystal densities of benzene-derived energetic compounds of general formula CaHbNcOd is presented, along with the reliability of this method. The densities of 119 neutral nitrobenzenes, energetic salts, and cocrystals with diverse compositions were estimated and compared with experimental data. Of the 74 nitrobenzenes for which direct comparisons could be made, the % error in the estimated density was within 0–3% for 54 compounds, 3–5% for 12 compounds, and 5–8% for the remaining 8 compounds. Among 45 energetic salts and cocrystals, the % error in the estimated density was within 0–3% for 25 compounds, 3–5% for 13 compounds, and 5–7.4% for 7 compounds. The absolute error surpassed 0.05 g/cm3 for 27 of the 119 compounds (22%). The largest errors occurred for compounds containing fused rings and for compounds with three –NH2 or –OH groups. Overall, the present approach for estimating the densities of benzene- derived explosives with different functional groups was found to be reliable. Keywords Density . Atomic volume . Explosive . Group additivity method . Energetic salts Introduction providing that the density and heat of formation values fed into the formula are reliable. The synthesis or hypothetical design of new explosive com- The purpose of the work reported in the present paper was to pounds requires the evaluation of various molecular and energet- develop a simple and straightforward correlation for predicting ic properties in order to select promising molecules. -
Meet Lycopene Prostate Cancer Is One of the Leading Causes of Cancer Death Among Men in the United States
UCLA Nutrition Noteworthy Title Lycopene and Mr. Prostate: Best Friends Forever Permalink https://escholarship.org/uc/item/5ks510rw Journal Nutrition Noteworthy, 5(1) Author Simzar, Soheil Publication Date 2002 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Meet Lycopene Prostate cancer is one of the leading causes of cancer death among men in the United States. Dietary factors are considered an important risk factor for the development of prostate cancer in addition to age, genetic predisposition, environmental factors, and other lifestyle factors such as smoking. Recent studies have indicated that there is a direct correlation between the occurrence of prostate cancer and the consumption of tomatoes and tomato-based products. Lycopene, one of over 600 carotenoids, is one of the main carotenoids found in human plasma and it is responsible for the red pigment found in tomatoes and other foods such as watermelons and red grapefruits. It has been shown to be a very potent antioxidant, with oxygen-quenching ability greater than any other carotenoid. Recent research has indicated that its antioxidant effects help lower the risk of heart disease, atherosclerosis, and different types of cancer-especially prostate cancer. Lycopene's Characteristics Lycopene is on of approximately 600 known carotenoids. Carotenoids are red, yellow, and orange pigments which are widely distributed in nature and are especially abundant in yellow- orange fruits and vegetables and dark green, leafy vegetables. They absorb light in the 400- 500nm region which gives them a red/yellow color. Only green plants and certain microorganisms such as fungi and algae can synthesize these pigments. -
A Thiocyanopalladation/Carbocyclization Transformation Identified Through Enzymatic Screening
Chemical Science View Article Online EDGE ARTICLE View Journal | View Issue A thiocyanopalladation/carbocyclization transformation identified through enzymatic Cite this: Chem. Sci.,2017,8,8050 screening: stereocontrolled tandem C–SCN and C–C bond formation† G. Malik,‡ R. A. Swyka,‡ V. K. Tiwari, X. Fei, G. A. Applegate and D. B. Berkowitz * Herein we describe a formal thiocyanopalladation/carbocyclization transformation and its parametrization and optimization using a new elevated temperature plate-based version of our visual colorimetric enzymatic screening method for reaction discovery. The carbocyclization step leads to C–SCN bond formation in tandem with C–C bond construction and is highly stereoselective, showing nearly absolute 1,2-anti-stereoinduction (5 examples) for substrates bearing allylic substitution, and nearly absolute 1,3- syn-stereoinduction (16 examples) for substrates bearing propargylic substitution. Based upon these high levels of stereoinduction, the dependence of the 1,2-stereoinduction upon cyclization substrate Creative Commons Attribution-NonCommercial 3.0 Unported Licence. geometry, and the generally high preference for the transoid vinyl thiocyanate alkene geometry, a mechanistic model is proposed, involving (i) Pd(II)-enyne coordination, (ii) thiocyanopalladation, (iii) migratory insertion and (iv) b-elimination. Examples of transition metal-mediated C–SCN bond formation that proceed smoothly on unactivated substrates and allow for preservation of the SCN moiety are lacking. Yet, the thiocyanate functionality -
Biosynthesis of Natural Products
63 2. Biosynthesis of Natural Products - Terpene Biosynthesis 2.1 Introduction Terpenes are a large and varied class of natural products, produced primarily by a wide variety of plants, insects, microoroganisms and animals. They are the major components of resin, and of turpentine produced from resin. The name "terpene" is derived from the word "turpentine". Terpenes are major biosynthetic building blocks within nearly every living creature. Steroids, for example, are derivatives of the triterpene squalene. When terpenes are modified, such as by oxidation or rearrangement of the carbon skeleton, the resulting compounds are generally referred to as terpenoids. Some authors will use the term terpene to include all terpenoids. Terpenoids are also known as Isoprenoids. Terpenes and terpenoids are the primary constituents of the essential oils of many types of plants and flowers. Essential oils are used widely as natural flavor additives for food, as fragrances in perfumery, and in traditional and alternative medicines such as aromatherapy. Synthetic variations and derivatives of natural terpenes and terpenoids also greatly expand the variety of aromas used in perfumery and flavors used in food additives. Recent estimates suggest that over 30'000 different terpenes have been characterized from natural sources. Early on it was recognized that the majority of terpenoid natural products contain a multiple of 5C-atoms. Hemiterpenes consist of a single isoprene unit, whereas the monoterpenes include e.g.: Monoterpenes CH2OH CHO CH2OH OH Myrcens -
33 34 35 Lipid Synthesis Laptop
BI/CH 422/622 Liver cytosol ANABOLISM OUTLINE: Photosynthesis Carbohydrate Biosynthesis in Animals Biosynthesis of Fatty Acids and Lipids Fatty Acids Triacylglycerides contrasts Membrane lipids location & transport Glycerophospholipids Synthesis Sphingolipids acetyl-CoA carboxylase Isoprene lipids: fatty acid synthase Ketone Bodies ACP priming 4 steps Cholesterol Control of fatty acid metabolism isoprene synth. ACC Joining Reciprocal control of b-ox Cholesterol Synth. Diversification of fatty acids Fates Eicosanoids Cholesterol esters Bile acids Prostaglandins,Thromboxanes, Steroid Hormones and Leukotrienes Metabolism & transport Control ANABOLISM II: Biosynthesis of Fatty Acids & Lipids Lipid Fat Biosynthesis Catabolism Fatty Acid Fatty Acid Synthesis Degradation Ketone body Utilization Isoprene Biosynthesis 1 Cholesterol and Steroid Biosynthesis mevalonate kinase Mevalonate to Activated Isoprenes • Two phosphates are transferred stepwise from ATP to mevalonate. • A third phosphate from ATP is added at the hydroxyl, followed by decarboxylation and elimination catalyzed by pyrophospho- mevalonate decarboxylase creates a pyrophosphorylated 5-C product: D3-isopentyl pyrophosphate (IPP) (isoprene). • Isomerization to a second isoprene dimethylallylpyrophosphate (DMAPP) gives two activated isoprene IPP compounds that act as precursors for D3-isopentyl pyrophosphate Isopentyl-D-pyrophosphate all of the other lipids in this class isomerase DMAPP Cholesterol and Steroid Biosynthesis mevalonate kinase Mevalonate to Activated Isoprenes • Two phosphates -
Biosynthesis of New Alpha-Bisabolol Derivatives Through a Synthetic Biology Approach Arthur Sarrade-Loucheur
Biosynthesis of new alpha-bisabolol derivatives through a synthetic biology approach Arthur Sarrade-Loucheur To cite this version: Arthur Sarrade-Loucheur. Biosynthesis of new alpha-bisabolol derivatives through a synthetic biology approach. Biochemistry, Molecular Biology. INSA de Toulouse, 2020. English. NNT : 2020ISAT0003. tel-02976811 HAL Id: tel-02976811 https://tel.archives-ouvertes.fr/tel-02976811 Submitted on 23 Oct 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE En vue de l’obtention du DOCTORAT DE L’UNIVERSITÉ DE TOULOUSE Délivré par l'Institut National des Sciences Appliquées de Toulouse Présentée et soutenue par Arthur SARRADE-LOUCHEUR Le 30 juin 2020 Biosynthèse de nouveaux dérivés de l'α-bisabolol par une approche de biologie synthèse Ecole doctorale : SEVAB - Sciences Ecologiques, Vétérinaires, Agronomiques et Bioingenieries Spécialité : Ingénieries microbienne et enzymatique Unité de recherche : TBI - Toulouse Biotechnology Institute, Bio & Chemical Engineering Thèse dirigée par Gilles TRUAN et Magali REMAUD-SIMEON Jury -
Use the Right Citrus-Based Cleaning Products to Avoid Corrosion Or Rust Bob Beckley, Project Leader
United States Department of Agriculture Facilities Forest Service Technology & Development Program March 2006 0673–2319–MTDC 7300/7100/5100/2400/2300 Use the Right Citrus-Based Cleaning Products to Avoid Corrosion or Rust Bob Beckley, Project Leader itrus-based cleaning products are commonly found in metal on their chain saws. The crew stopped using citrus-based residential and commercial settings. The ingredients in products because they believed citric acid was causing the these products vary widely (figure 1). While some of damage. However, the damage probably was caused by a C water-based citrus cleaning product. What To Look for in a Citrus-Based Cleaning Product The Material Safety Data Sheets (MSDSs) for chemical products list their ingredients. The MSDS for a citrus-based cleaner should list D-Limonene among the ingredients. D- Limonene is in the terpene family, which includes citrus and pine oils. Terpenes are generally not corrosive or harmful to metals or most plastics and polymers. Terpenes won’t cause rusting, pitting, etching, or staining. Citrus-based terpenes can dissolve heavy petroleum greases and residues in about 30 Figure 1—Citrus-based cleaners are commonly used in residential and minutes when they are used at ambient temperatures. commercial settings, but users often are unaware of the difference between citrus oil-based cleaning products and water-based products. A citrus oil-based cleaning product will not cause corrosion these products can cause corrosion or rust, others do not. The or rust. Such products are made from the oil found in the difference is based on the ingredients. Hundreds of cleaning orange peel, rather than the pulp and juice of the orange. -
Enhanced Lycopene Production in Escherichia Coli by Expression of Two MEP Pathway Enzymes from Vibrio Sp
catalysts Article Enhanced Lycopene Production in Escherichia coli by Expression of Two MEP Pathway Enzymes from Vibrio sp. Dhg 1, 1, 1 1, Min Jae Kim y, Myung Hyun Noh y , Sunghwa Woo , Hyun Gyu Lim * and Gyoo Yeol Jung 1,2,* 1 Department of Chemical Engineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, Gyeongbuk 37673, Korea; [email protected] (M.J.K.); [email protected] (M.H.N.); [email protected] (S.W.) 2 School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, Gyeongbuk 37673, Korea * Correspondence: [email protected] (H.G.L.); [email protected] (G.Y.J.); Tel.: +82-54-279-2391 (G.Y.J.) These authors contributed equally to this work. y Received: 28 October 2019; Accepted: 26 November 2019; Published: 29 November 2019 Abstract: Microbial production is a promising method that can overcome major limitations in conventional methods of lycopene production, such as low yields and variations in product quality. Significant efforts have been made to improve lycopene production by engineering either the 2-C-methyl-d-erythritol 4-phosphate (MEP) pathway or mevalonate (MVA) pathway in microorganisms. To further improve lycopene production, it is critical to utilize metabolic enzymes with high specific activities. Two enzymes, 1-deoxy-d-xylulose-5-phosphate synthase (Dxs) and farnesyl diphosphate synthase (IspA), are required in lycopene production using MEP pathway. Here, we evaluated the activities of Dxs and IspA of Vibrio sp. dhg, a newly isolated and fast-growing microorganism. -
WO 2009/005519 Al
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (43) International Publication Date PCT (10) International Publication Number 8 January 2009 (08.01.2009) WO 2009/005519 Al (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every A61K 31/19 (2006.01) A61K 31/185 (2006.01) kind of national protection available): AE, AG, AL, AM, A61K 31/20 (2006.01) A61K 31/225 (2006.01) AT,AU, AZ, BA, BB, BG, BH, BR, BW, BY,BZ, CA, CH, CN, CO, CR, CU, CZ, DE, DK, DM, DO, DZ, EC, EE, EG, (21) International Application Number: ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, PCT/US2007/072499 IN, IS, JP, KE, KG, KM, KN, KP, KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY,MA, MD, ME, MG, MK, MN, MW, (22) International Filing Date: 29 June 2007 (29.06.2007) MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PG, PH, PL, PT, RO, RS, RU, SC, SD, SE, SG, SK, SL, SM, SV, SY, (25) Filing Language: English TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW (26) Publication Language: English (71) Applicant (for all designated States except US): AC- (84) Designated States (unless otherwise indicated, for every CERA, INC. [US/US]; 380 Interlocken Crescent, Suite kind of regional protection available): ARIPO (BW, GH, 780, Broomfield, CO 80021 (US). GM, KE, LS, MW, MZ, NA, SD, SL, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, MD, RU, TJ, TM), (72) Inventor; and European (AT,BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, (75) Inventor/Applicant (for US only): HENDERSON, FR, GB, GR, HU, IE, IS, IT, LT,LU, LV,MC, MT, NL, PL, Samuel, T. -
Comparison of Biogenic Volatile Organic Compound Emissions from Broad Leaved and Coniferous Trees in Turkey
Environmental Impact II 647 Comparison of biogenic volatile organic compound emissions from broad leaved and coniferous trees in Turkey Y. M. Aydin1, B. Yaman1, H. Koca1, H. Altiok1, Y. Dumanoglu1, M. Kara1, A. Bayram1, D. Tolunay2, M. Odabasi1 & T. Elbir1 1Department of Environmental Engineering, Faculty of Engineering, Dokuz Eylul University, Turkey 2Department of Soil Science and Ecology, Faculty of Forestry, Istanbul University, Turkey Abstract Biogenic volatile organic compound (BVOC) emissions from thirty-eight tree species (twenty broad leaved and eighteen coniferous) grown in Turkey were measured. BVOC samples were collected with a specialized dynamic enclosure technique in forest areas where these tree species are naturally grown. In this method, the branches were enclosed in transparent nalofan bags maintaining their natural conditions and avoiding any source of stress. The air samples from the inlet and outlet of the bags were collected on an adsorbent tube containing Tenax. Samples were analyzed using a thermal desorption (TD) and gas chromatography mass spectrometry (GC/MS) system. Sixty-five BVOC compounds were analyzed in five major groups: isoprene, monoterpenes, sesquiterpens, oxygenated sesquiterpenes and other oxygenated VOCs. Emission factors were calculated and adjusted to standard conditions (1000 μmol/m2 s photosynthetically active radiation-PAR and 30°C temperature). Consistent with the literature, broad leaved trees emitted mainly isoprene while the coniferous trees emitted mainly monoterpenes. Even though fir species are coniferous trees, they emitted significant amounts of isoprene in addition to monoterpenes. Oak species showed a large inter-species variability in their emissions. Pine species emitted mainly monoterpenes and substantial amounts of oxygenated compounds. Keywords: BVOC emissions, dynamic enclosure system, emission factor, Turkey. -
(C5–C20) Emissions of Downy Birches
Atmos. Chem. Phys., 21, 8045–8066, 2021 https://doi.org/10.5194/acp-21-8045-2021 © Author(s) 2021. This work is distributed under the Creative Commons Attribution 4.0 License. Sesquiterpenes and oxygenated sesquiterpenes dominate the VOC (C5–C20) emissions of downy birches Heidi Hellén1, Arnaud P. Praplan1, Toni Tykkä1, Aku Helin1, Simon Schallhart1, Piia P. Schiestl-Aalto2,3,4, Jaana Bäck2,3, and Hannele Hakola1 1Atmospheric Composition Research Unit, Finnish Meteorological Institute, P.O. Box 503, 00101 Helsinki, Finland 2Institute for Atmospheric and Earth System Research/Forest Sciences, Helsinki, Finland 3Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland 4Department of Forest Ecology and Management, SLU, 901 83 Umeå, Sweden Correspondence: Heidi Hellén (heidi.hellen@fmi.fi) Received: 2 December 2020 – Discussion started: 16 December 2020 Revised: 23 March 2021 – Accepted: 28 April 2021 – Published: 26 May 2021 Abstract. Biogenic volatile organic compounds (BVOCs) 24 % and 17 % of the total SQT and OSQT emissions, re- emitted by the forests are known to have strong impacts in spectively. A stressed tree growing in a pot was also stud- the atmosphere. However, lots of missing reactivity is found, ied, and high emissions of α-farnesene and an unidentified especially in the forest air. Therefore better characterization SQT were detected together with high emissions of GLVs. of sources and identification/quantification of unknown re- Due to the relatively low volatility and the high reactivity of active compounds is needed. While isoprene and monoter- SQTs and OSQTs, downy birch emissions are expected to pene (MT) emissions of boreal needle trees have been studied have strong impacts on atmospheric chemistry, especially on quite intensively, there is much less knowledge on the emis- secondary organic aerosol (SOA) production.