Role of Brain Imaging in Disorders of Brain–Gut Interaction: a Rome Working Team Report Gut: First Published As 10.1136/Gutjnl-2019-318308 on 7 June 2019
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Imaging Genetic Strategies for Predicting the Quality of Sleep Using Depression-Specific Biomarkers
Imaging genetic strategies for predicting the quality of sleep using depression-specific biomarkers Mansu Kim 1, Xiaohui Yao 1, Bo-yong Park 2, Jingwen Yan 3, and Li Shen1,* 1Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, USA 2McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University, Canada 3Department of BioHealth Informatics, Indiana University School of Informatics and Computing, Indiana University, USA * Correspondence to [email protected] Overview Joint-connectivity-based sparse CCA Background: Sleep is an essential phenomenon for SNP connectivity Imaging genetics model: The joint-connectivity-based sparse canonical ··· X* samples × maintaining good health and wellbeing [1]. correlation analysis (JCB-SCCA) was applied on preprocessed features n Some studies reported that genetic and p SNPs (Figure 1). JCB-SCCA has an advantage for incorporating connectivity Loading vector u Maximum imaging biomarkers that depression is information and can handle multi-modal neuroimaging datasets. correlation Brain associated with sleep disorder [2]–[4]. connectivity ··· Prior biological knowledge: The average connectivity matrix computed ··· K samples Y* modalitiesn × Imaging genetics: Many studies adopted imaging from the HCP dataset and linkage disequilibrium obtained from 1,000 q voxels genetics methodology to find associations genome project were used as the prior connectivity information of the K = 2 Loading vector V between imaging and genetic biomarkers. In algorithm. The parameters of the algorithm were tuned jointly by nested K = 1 this study, we examine the imaging genetics five-fold cross-validation. Figure 1. JCB-SCCA association in depression and extract biomarkers for predicting the quality of sleep. Experiments and Results Prediction task: We built a prediction model for the Pittsburgh sleep quality index (PSQI) using the identified biomarkers. -
Advanced Morphometric Techniques Applied to The
UNIVERSIDAD POLITÉCNICA DE MADRID ESCUELA TÉCNICA SUPERIOR DE INGENIEROS DE TELECOMUNICACIÓN ADVANCED MORPHOMETRIC TECHNIQUES APPLIED TO THE STUDY OF HUMAN BRAIN ANATOMY TESIS DOCTORAL Yasser Alemán Gómez Ingeniero en Tecnologías Nucleares y Energéticas Máster en Neurociencias Madrid, 2015 DEPARTAMENTO DE INGENIERÍA ELECTRÓNICA ESCUELA TÉCNICA SUPERIOR DE INGENIEROS DE TELECOMUNICACIÓN PHD THESIS ADVANCED MORPHOMETRIC TECHNIQUES APPLIED TO THE STUDY OF HUMAN BRAIN ANATOMY AUTHOR Yasser Alemán Gómez Ing. en Tecnologías Nucleares y Energéticas MSc en Neurociencias ADVISOR Manuel Desco Menéndez, MScE, MD, PhD Madrid, 2015 Departamento de Ingeniería Electrónica Escuela Técnica Superior de Ingenieros de Telecomunicación Universidad Politécnica de Madrid Ph.D. Thesis Advanced morphometric techniques applied to the study of human brain anatomy Tesis doctoral Técnicas avanzadas de morfometría aplicadas al estudio de la anatomía cerebral humana Author: Yasser Alemán Gómez Advisor: Manuel Desco Menéndez Committee: Andrés Santos Lleó Universidad Politécnica de Madrid, Madrid, Spain Javier Pascau Gonzalez-Garzón Universidad Carlos III de Madrid, Madrid, Spain Raymond Salvador Civil FIDMAG – Germanes Hospitalàries, Barcelona, Spain Pablo Campo Martínez-Lage Universidad Autónoma de Madrid, Madrid, Spain Juan Domingo Gispert López Universidad Pompeu Fabra, Barcelona, Spain María Jesús Ledesma Carbayo Universidad Politécnica de Madrid, Madrid, Spain Juan José Vaquero López Universidad Carlos III de Madrid, Madrid, Spain Esta Tesis ha sido desarrollada en el Laboratorio de Imagen Médica de la Unidad de Medicina y Cirugía Experimental del Instituto de Investigación Sanitaria Gregorio Marañón y en colaboración con el Servicio de Psiquiatría del Niño y del Adolescente del Departamento de Psiquiatría del Hospital General Universitario Gregorio Marañón de Madrid, España. Tribunal nombrado por el Sr. -
Tool-Use and the Chimpanzee Brain: an Investigation of Gray and White Matter, and a Focused Study of Inferior Parietal Microstructure
Tool-use and the Chimpanzee Brain: An Investigation of Gray and White Matter, and a Focused Study of Inferior Parietal Microstructure by Laura Denise Reyes A.B. in Psychology, June 2008, Dartmouth College M.A. in Anthropology, May 2011, New Mexico State University M.Phil in Hominid Paleobiology, June 2013, The George Washington University A Dissertation submitted to The Faculty of The Columbian College of Arts and Sciences of The George Washington University in partial fulfillment of the requirements for the degree of Doctor of Philosophy August 31, 2017 Chet C. Sherwood Professor of Anthropology The Columbian College of Arts and Sciences of The George Washington University certifies that Laura D. Reyes has passed the Final Examination for the degree of Doctor of Philosophy as of May 3, 2017. This is the final and approved form of the dissertation. Tool-use and the Chimpanzee Brain: An Investigation of Gray and White Matter, and a Focused Study of Inferior Parietal Microstructure Laura Denise Reyes Dissertation Research Committee: Chet C. Sherwood, Professor of Anthropology, Dissertation Director Kimberley Phillips, Professor of Psychology, Trinity University, Committee Member Scott Mackey, Assistant Professor of Psychiatry, University of Vermont, Committee Member ii © Copyright 2017 by Laura Denise Reyes All rights reserved. iii Acknowledgments The author would like to thank her parents, Loretta and Francisco Reyes; her grandparents, Celia and Ralph Lopez and Paula and Francisco Reyes; and all of her family and friends who offered support during the course of her education, especially Amelia Villaseñor and Chrisandra Kufeldt. The author acknowledges the dissertation committee, Brenda Bradley (Chair), Chet Sherwood (Advisor), David Braun, Scott Mackey, Kimberley Phillips, and Sarah Shomstein, as well as the following funding sources: National Science Foundation Doctoral Dissertation Research Improvement Grant BCS-1455629 and GWU Provost’s Fellowship. -
S41598-019-48446-0[1]
Edinburgh Research Explorer Network analysis of canine brain morphometry links tumour risk to oestrogen deficiency and accelerated brain ageing Citation for published version: Rzechorzek, N, Saunders, O, Hiscox, L, Schwarz, T, Marioni-Henry, K, Argyle, D, Schoenebeck, J & Freeman, T 2019, 'Network analysis of canine brain morphometry links tumour risk to oestrogen deficiency and accelerated brain ageing', Scientific Reports. https://doi.org/10.1038/s41598-019-48446-0 Digital Object Identifier (DOI): 10.1038/s41598-019-48446-0 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: Scientific Reports Publisher Rights Statement: Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. -
Polygenic Evidence and Overlapped Brain Functional Connectivities For
Sun et al. Translational Psychiatry (2020) 10:252 https://doi.org/10.1038/s41398-020-00941-z Translational Psychiatry ARTICLE Open Access Polygenic evidence and overlapped brain functional connectivities for the association between chronic pain and sleep disturbance Jie Sun 1,2,3,WeiYan2,Xing-NanZhang2, Xiao Lin2,HuiLi2,Yi-MiaoGong2,Xi-MeiZhu2, Yong-Bo Zheng2, Xiang-Yang Guo3,Yun-DongMa2,Zeng-YiLiu2,LinLiu2,Jia-HongGao4, Michael V. Vitiello 5, Su-Hua Chang 2,6, Xiao-Guang Liu 1,7 and Lin Lu2,6 Abstract Chronic pain and sleep disturbance are highly comorbid disorders, which leads to barriers to treatment and significant healthcare costs. Understanding the underlying genetic and neural mechanisms of the interplay between sleep disturbance and chronic pain is likely to lead to better treatment. In this study, we combined 1206 participants with phenotype data, resting-state functional magnetic resonance imaging (rfMRI) data and genotype data from the Human Connectome Project and two large sample size genome-wide association studies (GWASs) summary data from published studies to identify the genetic and neural bases for the association between pain and sleep disturbance. Pittsburgh sleep quality index (PSQI) score was used for sleep disturbance, pain intensity was measured by Pain Intensity Survey. The result showed chronic pain was significantly correlated with sleep disturbance (r = 0.171, p-value < 0.001). Their genetic correlation was rg = 0.598 using linkage disequilibrium (LD) score regression analysis. Polygenic score (PGS) association analysis showed PGS of chronic pain was significantly associated with sleep and vice versa. 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; Nine shared functional connectivity (FCs) were identified involving prefrontal cortex, temporal cortex, precentral/ postcentral cortex, anterior cingulate cortex, fusiform gyrus and hippocampus. -
Changes in Cerebral Morphology Consequent to Peripheral Autonomic Denervation
NeuroImage 18 (2003) 908–916 www.elsevier.com/locate/ynimg Changes in cerebral morphology consequent to peripheral autonomic denervation Hugo D. Critchley,a,b,* Catriona D. Good,a John Ashburner,a Richard S. Frackowiak,a Christopher J. Mathias,b,c and Raymond J. Dolana a Wellcome Department of Imaging Neuroscience, Institute of Neurology, UCL, 12 Queen Square, London WC1N 3BG, UK b Autonomic Unit, National Hospital for Neurology & Neurosurgery and Institute of Neurology, UCL, Queen Square, London WC1N 3BG, UK c Neurovascular Medicine Unit, St. Mary’s Hospital, ICSM, London W2 1NY, UK Received 14 June 2002; accepted 12 November 2002 Abstract Pure autonomic failure (PAF) is characterized by an acquired, selective, peripheral denervation of the autonomic nervous system. Patients with PAF fail to generate bodily states of arousal via the autonomic nervous system in response to physical or cognitive effort. We used voxel-based morphometry to test the hypothesis that changes in the morphology of brain regions involved in autonomic control would arise as a consequence to the longstanding absence of peripheral autonomic responses in PAF patients. Optimized voxel-based morphometry of structural magnetic resonance scans was used to test for regional differences in grey and white matter in 15 PAF patients and matched controls. There were no group differences observed in global measures of grey matter, white matter, or cerebrospinal fluid (CSF). We identified morphometric differences reflecting regional decreases in grey matter volume and concentration in anterior cingulate and insular cortices in PAF patients relative to controls. Morphometric differences in brainstem and subcortical regions did not reach statistical significance. -
Local Connectome Phenotypes Predict Social, Health, and Cognitive Factors
RESEARCH Local connectome phenotypes predict social, health, and cognitive factors 1 2,3 4,5 Michael A. Powell , Javier O. Garcia , Fang-Cheng Yeh , 2,3,6 7 Jean M. Vettel , and Timothy Verstynen 1Department of Mathematical Sciences, United States Military Academy, West Point, NY, USA 2U.S. Army Research Laboratory, Aberdeen Proving Ground, MD, USA 3Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA 4Department of Neurological Surgery, University of Pittsburgh Medical Center, Pittsburgh, PA, USA 5Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA, USA 6Department of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA 7 an open access journal Department of Psychology and Center for the Neural Basis of Cognition, Carnegie Mellon University, Pittsburgh, PA, USA Keywords: Local connectome, White matter, Individual differences, Behavior prediction, Structural connectivity ABSTRACT The unique architecture of the human connectome is defined initially by genetics and subsequently sculpted over time with experience. Thus, similarities in predisposition and experience that lead to similarities in social, biological, and cognitive attributes should also be reflected in the local architecture of white matter fascicles. Here we employ a method known as local connectome fingerprinting that uses diffusion MRI to measure the fiber-wise characteristics of macroscopic white matter pathways throughout the brain. This Citation: Powell, M. A., Garcia, J. O., fingerprinting approach was applied to a large sample (N = 841) of subjects from the Yeh, F.-C., Vettel, J. M., & Verstynen, T. (2017). Local connectome phenotypes Human Connectome Project, revealing a reliable degree of between-subject correlation in predict social, health, and cognitive factors. -
Proteomic Analysis of Postsynaptic Proteins in Regions of the Human Neocortex
Proteomic analysis of postsynaptic proteins in regions of the human neocortex Marcia Roy1*, Oksana Sorokina2*, Nathan Skene1, Clemence Simonnet1, Francesca Mazzo3, Ruud Zwart3, Emanuele Sher3, Colin Smith1, J Douglas Armstrong2 and Seth GN Grant1. * equal contribution Author Affiliations: 1. Genes to Cognition Program, Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh EH16 4SB, United Kingdom 2. School of Informatics, University of Edinburgh, Edinburgh, EH8 9AB, United Kingdom 3. Lilly Research Centre, Eli Lilly & Company, Erl Wood Manor, Windlesham, GU20 6PH, United Kingdom 1 Abstract: The postsynaptic proteome of excitatory synapses comprises ~1,000 highly conserved proteins that control the behavioral repertoire and mutations disrupting their function cause >130 brain diseases. Here, we document the composition of postsynaptic proteomes in human neocortical regions and integrate it with genetic, functional and structural magnetic resonance imaging, positron emission tomography imaging, and behavioral data. Neocortical regions show signatures of expression of individual proteins, protein complexes, biochemical and metabolic pathways. The compositional signatures in brain regions involved with language, emotion and memory functions were characterized. Integrating large-scale GWAS with regional proteome data identifies the same cortical region for smoking behavior as found with fMRI data. The neocortical postsynaptic proteome data resource can be used to link genetics to brain imaging and behavior, and to study the role of postsynaptic proteins in localization of brain functions. 2 Introduction: For almost two centuries, scientists have pursued the study of localization of function in the human cerebral neocortex using diverse methods including neuroanatomy, electrophysiology, imaging and gene expression studies. The frontal, parietal, temporal and occipital lobes of the neocortex have been commonly subdivided into Brodmann areas (BA)1 based on cytoarchitectural features, and specific behavioral functions have been ascribed to these regions. -
A Critical Look at Connectomics
EDITORIAL A critical look at connectomics There is a public perception that connectomics will translate directly into insights for disease. It is essential that scientists and funding institutions avoid misrepresentation and accurately communicate the scope of their work. onnectomes are generating interest and excitement, both among nervous system, dubbed the classic connectome because it is currently neuroscientists and the public. This September, the first grants the only wiring diagram for an animal’s entire nervous system at the level Cunder the Human Connectome Project, totaling $40 million of the synapse. Although major neurobiological insights have been made over 5 years, were awarded by the US National Institutes of Health using C. elegans and its known connectivity and genome, there are still (NIH). In the public arena, striking, colorful pictures of human brains many questions remaining that can only be answered by hypothesis-driven have accompanied claims that imply that understanding the complete experiments. For example, we still don’t completely understand the process connectivity of the human brain’s billions of neurons by a trillion synapses of axon regeneration, relevant to spinal cord injury in humans, in this is not only possible, but that this will also directly translate into insights comparatively simple system. Thus, a connectome, at any resolution, is for neurological and psychiatric disorders. Even a press release from only one of several complementary tools necessary to understand nervous the NIH touted that the Human Connectome Project would map the system disease and injury. wiring diagram of the entire living human brain and would link these There are substantial efforts aimed at generating connectomes for circuits to the full spectrum of brain function in health and disease. -
Brain Morphometry in 22Q11.2 Deletion Syndrome: an Exploration of Diferences in Cortical Thickness, Surface Area, and Their Contribution to Cortical Volume M
www.nature.com/scientificreports OPEN Brain morphometry in 22q11.2 deletion syndrome: an exploration of diferences in cortical thickness, surface area, and their contribution to cortical volume M. Gudbrandsen1, E. Daly1, C. M. Murphy1,2, C. E. Blackmore1,2, M. Rogdaki3,4, C. Mann5, A. Bletsch5, L. Kushan6, C. E. Bearden6,7, D. G. M. Murphy1, M. C. Craig1,8 & Christine Ecker1,5* 22q11.2 Deletion Syndrome (22q11.2DS) is the most common microdeletion in humans, with a heterogenous clinical presentation including medical, behavioural and psychiatric conditions. Previous neuroimaging studies examining the neuroanatomical underpinnings of 22q11.2DS show alterations in cortical volume (CV), cortical thickness (CT) and surface area (SA). The aim of this study was to identify (1) the spatially distributed networks of diferences in CT and SA in 22q11.2DS compared to controls, (2) their unique and spatial overlap, as well as (3) their relative contribution to observed diferences in CV. Structural MRI scans were obtained from 62 individuals with 22q11.2DS and 57 age- and-gender-matched controls (aged 6–31). Using FreeSurfer, we examined diferences in vertex-wise estimates of CV, CT and SA at each vertex, and compared the frequencies of vertices with a unique or overlapping diference for each morphometric feature. Our fndings indicate that CT and SA make both common and unique contributions to volumetric diferences in 22q11.2DS, and in some areas, their strong opposite efects mask diferences in CV. By identifying the neuroanatomic variability in 22q11.2DS, and the separate contributions of CT and SA, we can start exploring the shared and distinct mechanisms that mediate neuropsychiatric symptoms across disorders, e.g. -
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NEUROSCIENCE RESEARCH NOTES OPEN ACCESS | EDITORIAL ISSN: 2576-828X From online resources to collaborative global neuroscience research: where are we heading? Pike See Cheah 1,2, King-Hwa Ling 2,3 and Eric Tatt Wei Ho 4,* 1 Department of Human Anatomy, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia. 2 NeuroBiology & Genetics Group, Genetics and Regenerative Medicine Research Centre, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia. 3 Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia. 4 Center for Intelligent Signal and Imaging Research, Universiti Teknologi PETRONAS, Perak, Malaysia. *Corresponding authors: [email protected]; Tel.: +60-5-368-7899 Published: 21 July 2020 https://doi.org/10.31117/neuroscirn.v3i3.51 Keywords: neuroinformatics; machine learning; bioinformatics; brain project; online resources; databases ©2020 by Cheah et al. for use and distribution in accord with the Creative Commons Attribution (CC BY-NC 4.0) license (https://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original author and source are credited. 1.0 INTRODUCTION The most visible contributions from neuroinformatics Neuroscience has emerged as a richly transdisciplinary include the myriad reference atlases of brain anatomy field, poised to leverage potential synergies with (human and other mammals such as rodents, primates information technology. To investigate the complex and pig), gene and protein sequences and the nervous system in its normal function and the disease bioinformatics software tools for alignment, matching state, researchers in the field are increasingly reliant and identification. Other neuroinformatics initiatives on generating, sharing and analyzing diverse data from include the various open-source preprocessing and multiple experimental paradigms at multiple spatial processing software and workflows for data analysis as and temporal scales (Frackowiak & Markram, 2015). -
Genetic and Environmental Influence on the Human Functional Connectome Andrew E
Cerebral Cortex, 2019;00: 1–15 doi: 10.1093/cercor/bhz225 Original Article Downloaded from https://academic.oup.com/cercor/advance-article-abstract/doi/10.1093/cercor/bhz225/5618752 by guest on 03 March 2020 ORIGINAL ARTICLE Genetic and Environmental Influence on the Human Functional Connectome Andrew E. Reineberg 1, Alexander S. Hatoum2, John K. Hewitt1,2, Marie T. Banich3 and Naomi P. Friedman1,2 1Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, CO, 80309, USA, 2Department of Psychology and Neuroscience, University of Colorado Boulder, Boulder, CO, 80309, USA, and 3Institute of Cognitive Science, University of Colorado Boulder, Boulder, CO, 80309, USA Address correspondence to Andrew E. Reineberg, email: [email protected] http://orcid.org/0000-0002-0806-440X Abstract Detailed mapping of genetic and environmental influences on the functional connectome is a crucial step toward developing intermediate phenotypes between genes and clinical diagnoses or cognitive abilities. We analyzed resting-state functional magnetic resonance imaging data from two adult twin samples (Nos = 446 and 371) to quantify genetic and environmental influence on all pairwise functional connections between 264 brain regions (∼35 000 functional connections). Nonshared environmental influence was high across the whole connectome. Approximately 14–22% of connections had nominally significant genetic influence in each sample, 4.6% were significant in both samples, and 1–2% had heritability estimates greater than 30%. Evidence of shared environmental influence was weak. Genetic influences on connections were distinct from genetic influences on a global summary measure of the connectome, network-based estimates of connectivity, and movement during the resting-state scan, as revealed by a novel connectome-wide bivariate genetic modeling procedure.