Lichens of Israel
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Thi Thu Tram NGUYEN
ANNÉE 2014 THÈSE / UNIVERSITÉ DE RENNES 1 sous le sceau de l’Université Européenne de Bretagne pour le grade de DOCTEUR DE L’UNIVERSITÉ DE RENNES 1 Mention : Chimie Ecole doctorale Sciences De La Matière Thi Thu Tram NGUYEN Préparée dans l’unité de recherche UMR CNRS 6226 Equipe PNSCM (Produits Naturels Synthèses Chimie Médicinale) (Faculté de Pharmacie, Université de Rennes 1) Screening of Thèse soutenue à Rennes le 19 décembre 2014 mycosporine-like devant le jury composé de : compounds in the Marie-Dominique GALIBERT Professeur à l’Université de Rennes 1 / Examinateur Dermatocarpon genus. Holger THÜS Conservateur au Natural History Museum Londres / Phytochemical study Rapporteur Erwan AR GALL of the lichen Maître de conférences à l’Université de Bretagne Occidentale / Rapporteur Dermatocarpon luridum Kim Phi Phung NGUYEN Professeur à l’Université des sciences naturelles (With.) J.R. Laundon. d’Hô-Chi-Minh-Ville Vietnam / Examinateur Marylène CHOLLET-KRUGLER Maître de conférences à l’Université de Rennes1 / Co-directeur de thèse Joël BOUSTIE Professeur à l’Université de Rennes 1 / Directeur de thèse Remerciements En premier lieu, je tiens à remercier Monsieur le Dr Holger Thüs et Monsieur le Dr Erwan Ar Gall d’avoir accepté d’être les rapporteurs de mon manuscrit, ainsi que Madame la Professeure Marie-Dominique Galibert d’avoir accepté de participer à ce jury de thèse. J’exprime toute ma gratitude au Dr Marylène Chollet-Krugler pour avoir guidé mes pas dès les premiers jours et tout au long de ces trois années. Je la remercie particulièrement pour sa disponibilité et sa grande gentillesse, son écoute et sa patience. -
Biological Soil Crust Community Types Differ in Key Ecological Functions
UC Riverside UC Riverside Previously Published Works Title Biological soil crust community types differ in key ecological functions Permalink https://escholarship.org/uc/item/2cs0f55w Authors Pietrasiak, Nicole David Lam Jeffrey R. Johansen et al. Publication Date 2013-10-01 DOI 10.1016/j.soilbio.2013.05.011 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Soil Biology & Biochemistry 65 (2013) 168e171 Contents lists available at SciVerse ScienceDirect Soil Biology & Biochemistry journal homepage: www.elsevier.com/locate/soilbio Short communication Biological soil crust community types differ in key ecological functions Nicole Pietrasiak a,*, John U. Regus b, Jeffrey R. Johansen c,e, David Lam a, Joel L. Sachs b, Louis S. Santiago d a University of California, Riverside, Soil and Water Sciences Program, Department of Environmental Sciences, 2258 Geology Building, Riverside, CA 92521, USA b University of California, Riverside, Department of Biology, University of California, Riverside, CA 92521, USA c Biology Department, John Carroll University, 1 John Carroll Blvd., University Heights, OH 44118, USA d University of California, Riverside, Botany & Plant Sciences Department, 3113 Bachelor Hall, Riverside, CA 92521, USA e Department of Botany, Faculty of Science, University of South Bohemia, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic article info abstract Article history: Soil stability, nitrogen and carbon fixation were assessed for eight biological soil crust community types Received 22 February 2013 within a Mojave Desert wilderness site. Cyanolichen crust outperformed all other crusts in multi- Received in revised form functionality whereas incipient crust had the poorest performance. A finely divided classification of 17 May 2013 biological soil crust communities improves estimation of ecosystem function and strengthens the Accepted 18 May 2013 accuracy of landscape-scale assessments. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
Eriogonum Visheri A
Eriogonum visheri A. Nelson (Visher’s buckwheat): A Technical Conservation Assessment Prepared for the USDA Forest Service, Rocky Mountain Region, Species Conservation Project December 18, 2006 Juanita A. R. Ladyman, Ph.D. JnJ Associates LLC 6760 S. Kit Carson Cir E. Centennial, CO 80122 Peer Review Administered by Center for Plant Conservation Ladyman, J.A.R. (2006, December 18). Eriogonum visheri A. Nelson (Visher’s buckwheat): a technical conservation assessment. [Online]. USDA Forest Service, Rocky Mountain Region. Available: http://www.fs.fed.us/r2/ projects/scp/assessments/eriogonumvisheri.pdf [date of access]. ACKNOWLEDGMENTS The time spent and help given by all the people and institutions listed in the reference section are gratefully acknowledged. I would also like to thank the North Dakota Parks and Recreation Department, in particular Christine Dirk, and the South Dakota Natural Heritage Program, in particular David Ode, for their generosity in making their records, reports, and photographs available. I thank the Montana Natural Heritage Program, particularly Martin Miller, Mark Gabel of the Black Hills University Herbarium, Robert Tatina of the Dakota Wesleyan University, Christine Niezgoda of the Field Museum of Natural History, Carrie Kiel Academy of Natural Sciences, Dave Dyer of the University of Montana Herbarium, Caleb Morse of the R.L. McGregor Herbarium, Robert Kaul of the C. E. Bessey Herbarium, John La Duke of the University of North Dakota Herbarium, Joe Washington of the Dakota National Grasslands, and Doug Sargent of the Buffalo Gap National Grasslands - Region 2, for the information they provided. I also appreciate the access to files and assistance given to me by Andrew Kratz, Region 2 USDA Forest Service, and Chuck Davis, U.S. -
Lichens and Allied Fungi of the Indiana Forest Alliance
2017. Proceedings of the Indiana Academy of Science 126(2):129–152 LICHENS AND ALLIED FUNGI OF THE INDIANA FOREST ALLIANCE ECOBLITZ AREA, BROWN AND MONROE COUNTIES, INDIANA INCORPORATED INTO A REVISED CHECKLIST FOR THE STATE OF INDIANA James C. Lendemer: Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY 10458-5126 USA ABSTRACT. Based upon voucher collections, 108 lichen species are reported from the Indiana Forest Alliance Ecoblitz area, a 900 acre unit in Morgan-Monroe and Yellowwood State Forests, Brown and Monroe Counties, Indiana. The lichen biota of the study area was characterized as: i) dominated by species with green coccoid photobionts (80% of taxa); ii) comprised of 49% species that reproduce primarily with lichenized diaspores vs. 44% that reproduce primarily through sexual ascospores; iii) comprised of 65% crustose taxa, 29% foliose taxa, and 6% fruticose taxa; iv) one wherein many species are rare (e.g., 55% of species were collected fewer than three times) and fruticose lichens other than Cladonia were entirely absent; and v) one wherein cyanolichens were poorly represented, comprising only three species. Taxonomic diversity ranged from 21 to 56 species per site, with the lowest diversity sites concentrated in riparian corridors and the highest diversity sites on ridges. Low Gap Nature Preserve, located within the study area, was found to have comparable species richness to areas outside the nature preserve, although many species rare in the study area were found only outside preserve boundaries. Sets of rare species are delimited and discussed, as are observations as to the overall low abundance of lichens on corticolous substrates and the presence of many unhealthy foliose lichens on mature tree boles. -
A Field Guide to Biological Soil Crusts of Western U.S. Drylands Common Lichens and Bryophytes
A Field Guide to Biological Soil Crusts of Western U.S. Drylands Common Lichens and Bryophytes Roger Rosentreter Matthew Bowker Jayne Belnap Photographs by Stephen Sharnoff Roger Rosentreter, Ph.D. Bureau of Land Management Idaho State Office 1387 S. Vinnell Way Boise, ID 83709 Matthew Bowker, Ph.D. Center for Environmental Science and Education Northern Arizona University Box 5694 Flagstaff, AZ 86011 Jayne Belnap, Ph.D. U.S. Geological Survey Southwest Biological Science Center Canyonlands Research Station 2290 S. West Resource Blvd. Moab, UT 84532 Design and layout by Tina M. Kister, U.S. Geological Survey, Canyonlands Research Station, 2290 S. West Resource Blvd., Moab, UT 84532 All photos, unless otherwise indicated, copyright © 2007 Stephen Sharnoff, Ste- phen Sharnoff Photography, 2709 10th St., Unit E, Berkeley, CA 94710-2608, www.sharnoffphotos.com/. Rosentreter, R., M. Bowker, and J. Belnap. 2007. A Field Guide to Biological Soil Crusts of Western U.S. Drylands. U.S. Government Printing Office, Denver, Colorado. Cover photos: Biological soil crust in Canyonlands National Park, Utah, cour- tesy of the U.S. Geological Survey. 2 Table of Contents Acknowledgements ....................................................................................... 4 How to use this guide .................................................................................... 4 Introduction ................................................................................................... 4 Crust composition .................................................................................. -
Collecting and Recording Fungi
British Mycological Society Recording Network Guidance Notes COLLECTING AND RECORDING FUNGI A revision of the Guide to Recording Fungi previously issued (1994) in the BMS Guides for the Amateur Mycologist series. Edited by Richard Iliffe June 2004 (updated August 2006) © British Mycological Society 2006 Table of contents Foreword 2 Introduction 3 Recording 4 Collecting fungi 4 Access to foray sites and the country code 5 Spore prints 6 Field books 7 Index cards 7 Computers 8 Foray Record Sheets 9 Literature for the identification of fungi 9 Help with identification 9 Drying specimens for a herbarium 10 Taxonomy and nomenclature 12 Recent changes in plant taxonomy 12 Recent changes in fungal taxonomy 13 Orders of fungi 14 Nomenclature 15 Synonymy 16 Morph 16 The spore stages of rust fungi 17 A brief history of fungus recording 19 The BMS Fungal Records Database (BMSFRD) 20 Field definitions 20 Entering records in BMSFRD format 22 Locality 22 Associated organism, substrate and ecosystem 22 Ecosystem descriptors 23 Recommended terms for the substrate field 23 Fungi on dung 24 Examples of database field entries 24 Doubtful identifications 25 MycoRec 25 Recording using other programs 25 Manuscript or typescript records 26 Sending records electronically 26 Saving and back-up 27 Viruses 28 Making data available - Intellectual property rights 28 APPENDICES 1 Other relevant publications 30 2 BMS foray record sheet 31 3 NCC ecosystem codes 32 4 Table of orders of fungi 34 5 Herbaria in UK and Europe 35 6 Help with identification 36 7 Useful contacts 39 8 List of Fungus Recording Groups 40 9 BMS Keys – list of contents 42 10 The BMS website 43 11 Copyright licence form 45 12 Guidelines for field mycologists: the practical interpretation of Section 21 of the Drugs Act 2005 46 1 Foreword In June 2000 the British Mycological Society Recording Network (BMSRN), as it is now known, held its Annual Group Leaders’ Meeting at Littledean, Gloucestershire. -
Marine Cyanolichens from Different Littoral Zones Are
bioRxiv preprint doi: https://doi.org/10.1101/209320; this version posted February 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Marine cyanolichens from different littoral 2 zones are associated with distinct bacterial 3 communities 4 Nyree J. West*1, Delphine Parrot2†, Claire Fayet1, Martin Grube3, Sophie Tomasi2 5 and Marcelino T. Suzuki4 6 1 Sorbonne Universités, UPMC Univ Paris 06, CNRS, Observatoire Océanologique de Banyuls (OOB), 7 F-66650, Banyuls sur mer, France 8 2 UMR CNRS 6226, Institut des Sciences chimiques de Rennes, Equipe CORINT « Chimie Organique 9 et Interfaces », UFR Sciences Pharmaceutiques et Biologiques, Univ. Rennes 1, Université Bretagne 10 Loire, F-35043, Rennes, France 11 3 Institute of Plant Sciences, University of Graz, A-8010 Graz, Austria 12 4 Sorbonne Universités, UPMC Univ. Paris 06, CNRS, Laboratoire de Biodiversité et Biotechnologies 13 Microbiennes (LBBM), Observatoire Océanologique, F-66650, Banyuls sur mer, France 14 †Current address: GEOMAR Helmholtz Centre for Ocean Research Kiel, Research Unit Marine 15 Natural Products Chemistry, GEOMAR Centre for Marine Biotechnology, 24106 Kiel, Germany 16 *Corresponding author: 17 Observatoire Océanologique de Banyuls sur mer, F-66650 Banyuls sur mer, France 18 19 Tel: +33 (0)4 30 19 24 29, Fax: +33 (0)4 68 88 73 98 20 Email: [email protected] 21 1 bioRxiv preprint doi: https://doi.org/10.1101/209320; this version posted February 6, 2018. -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al. -
Opuscula Philolichenum, 11: 120-XXXX
Opuscula Philolichenum, 13: 102-121. 2014. *pdf effectively published online 15September2014 via (http://sweetgum.nybg.org/philolichenum/) Lichens and lichenicolous fungi of Grasslands National Park (Saskatchewan, Canada) 1 COLIN E. FREEBURY ABSTRACT. – A total of 194 lichens and 23 lichenicolous fungi are reported. New for North America: Rinodina venostana and Tremella christiansenii. New for Canada and Saskatchewan: Acarospora rosulata, Caloplaca decipiens, C. lignicola, C. pratensis, Candelariella aggregata, C. antennaria, Cercidospora lobothalliae, Endocarpon loscosii, Endococcus oreinae, Fulgensia subbracteata, Heteroplacidium zamenhofianum, Lichenoconium lichenicola, Placidium californicum, Polysporina pusilla, Rhizocarpon renneri, Rinodina juniperina, R. lobulata, R. luridata, R. parasitica, R. straussii, Stigmidium squamariae, Verrucaria bernaicensis, V. fusca, V. inficiens, V. othmarii, V. sphaerospora and Xanthoparmelia camtschadalis. New for Saskatchewan alone: Acarospora stapfiana, Arthonia glebosa, A. epiphyscia, A. molendoi, Blennothallia crispa, Caloplaca arenaria, C. chrysophthalma, C. citrina, C. grimmiae, C. microphyllina, Candelariella efflorescens, C. rosulans, Diplotomma venustum, Heteroplacidium compactum, Intralichen christiansenii, Lecanora valesiaca, Lecidea atrobrunnea, Lecidella wulfenii, Lichenodiplis lecanorae, Lichenostigma cosmopolites, Lobothallia praeradiosa, Micarea incrassata, M. misella, Physcia alnophila, P. dimidiata, Physciella chloantha, Polycoccum clauzadei, Polysporina subfuscescens, P. urceolata, -
Revisions of British and Irish Lichens
Revisions of British and Irish Lichens Volume 2 September 2020 Peltigerales: Collemataceae Cover image: Scytinium turgidum, on a limestone grave monument, Abney Park cemetery, Stoke Newington, Middlesex, England. Revisions of British and Irish Lichens is a free-to-access serial publication under the auspices of the British Lichen Society, that charts changes in our understanding of the lichens and lichenicolous fungi of Great Britain and Ireland. Each volume will be devoted to a particular family (or group of families), and will include descriptions, keys, habitat and distribution data for all the species included. The maps are based on information from the BLS Lichen Database, that also includes data from the historical Mapping Scheme and the Lichen Ireland database. The choice of subject for each volume will depend on the extent of changes in classification for the families concerned, and the number of newly recognized species since previous treatments. To date, accounts of lichens from our region have been published in book form. However, the time taken to compile new printed editions of the entire lichen biota of Britain and Ireland is extensive, and many parts are out-of-date even as they are published. Issuing updates as a serial electronic publication means that important changes in understanding of our lichens can be made available with a shorter delay. The accounts may also be compiled at intervals into complete printed accounts, as new editions of the Lichens of Great Britain and Ireland. Editorial Board Dr P.F. Cannon (Department of Taxonomy & Biodiversity, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK). Dr A. -
Abstracts for IAL 6- ABLS Joint Meeting (2008)
Abstracts for IAL 6- ABLS Joint Meeting (2008) AÐALSTEINSSON, KOLBEINN 1, HEIÐMARSSON, STARRI 2 and VILHELMSSON, ODDUR 1 1The University of Akureyri, Borgir Nordurslod, IS-600 Akureyri, Iceland, 2Icelandic Institute of Natural History, Akureyri Division, Borgir Nordurslod, IS-600 Akureyri, Iceland Isolation and characterization of non-phototrophic bacterial symbionts of Icelandic lichens Lichens are symbiotic organisms comprise an ascomycete mycobiont, an algal or cyanobacterial photobiont, and typically a host of other bacterial symbionts that in most cases have remained uncharacterized. In the current project, which focuses on the identification and preliminary characterization of these bacterial symbionts, the species composition of the resident associate microbiota of eleven species of lichen was investigated using both 16S rDNA sequencing of isolated bacteria growing in pure culture and Denaturing Gradient Gel Electrophoresis (DGGE) of the 16S-23S internal transcribed spacer (ITS) region amplified from DNA isolated directly from lichen samples. Gram-positive bacteria appear to be the most prevalent, especially actinomycetes, although bacilli were also observed. Gamma-proteobacteria and species from the Bacteroides/Chlorobi group were also observed. Among identified genera are Rhodococcus, Micrococcus, Microbacterium, Bacillus, Chryseobacterium, Pseudomonas, Sporosarcina, Agreia, Methylobacterium and Stenotrophomonas . Further characterization of selected strains indicated that most strains ar psychrophilic or borderline psychrophilic,