Chromatic Adaptation in Lichen Phyco- and Photobionts
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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Species Relationships in the Lichen Alga Trebouxia (Chlorophyta, Trebouxiophyceae): Molecular Phylogenetic Analyses of Nuclear-E
Symbiosis, 23 (1997) 125-148 125 Balaban, Philadelphia/Rehovot Species Relationships in the Lichen Alga Trebouxia (Chlorophyta, Trebouxiophyceae): Molecular Phylogenetic Analyses of Nuclear-Encoded Large Subunit rRNA Gene Sequences THOMAS FRIEDL* and CLAUDIA ROKITTA Fachbereich Biologie, Allgemeine Botanik, Universitiit Kaiserslautern, POB 3049, 67653 Kaiserslautern, Germany, Tel. +49-631-2052360, Fax. +49-631-2052998, E-mail. [email protected] Received December 11, 1996; Accepted May 22, 1997 Abstract Sequences of the 5' region of the nuclear-encoded large subunit (26S) rRNA genes were determined for seven species of Trebouxia to investigate the evolutionary relationships among these coccoid green algae that form the most frequently occurring photobiont in lichen symbiosis. Phylogenies inferred from these data substantiate the importance of certain chloroplast characters for tracing species relationships within Trebouxia. The monophyletic origin of the "Trebouxia cluster" which comprises only those species that have centrally located chloroplasts and distinct pyrenoid matrices interdispersed by a thylakoid tubule network is clearly resolved. However, those species of Trebouxia with a chloroplast closely appressed to the cell wall at certain stages and an indistinct pyrenoid containing regular thylakoids are distantly related to the Trebouxia cluster; these species may represent an independent genus. These findings are corroborated by analyses of available complete 18S rDNA sequences from Trebouxia spp. There are about 1.5 times more variable positions in the partial 26S rDNA sequences than in the full 18S sequences, and most of these positions are .. The author to whom correspondence should be sent. Presented at the Third International Lichenological Symposium (IAL3), September 1-7, 1996, Salzburg, Austria 0334-5114/97 /$05.50 ©1997 Balaban 126 T. -
The Puzzle of Lichen Symbiosis
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1503 The puzzle of lichen symbiosis Pieces from Thamnolia IOANA ONUT, -BRÄNNSTRÖM ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 ISBN 978-91-554-9887-0 UPPSALA urn:nbn:se:uu:diva-319639 2017 Dissertation presented at Uppsala University to be publicly examined in Lindhalsalen, EBC, Norbyvägen 14, Uppsala, Thursday, 1 June 2017 at 09:15 for the degree of Doctor of Philosophy. The examination will be conducted in English. Faculty examiner: Associate Professor Anne Pringle (University of Wisconsin-Madison, Department of Botany). Abstract Onuț-Brännström, I. 2017. The puzzle of lichen symbiosis. Pieces from Thamnolia. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1503. 62 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-554-9887-0. Symbiosis brought important evolutionary novelties to life on Earth. Lichens, the symbiotic entities formed by fungi, photosynthetic organisms and bacteria, represent an example of a successful adaptation in surviving hostile environments. Yet many aspects of the lichen symbiosis remain unexplored. This thesis aims at bringing insights into lichen biology and the importance of symbiosis in adaptation. I am using as model system a successful colonizer of tundra and alpine environments, the worm lichens Thamnolia, which seem to only reproduce vegetatively through symbiotic propagules. When the genetic architecture of the mating locus of the symbiotic fungal partner was analyzed with genomic and transcriptomic data, a sexual self-incompatible life style was revealed. However, a screen of the mating types ratios across natural populations detected only one of the mating types, suggesting that Thamnolia has no potential for sexual reproduction because of lack of mating partners. -
A Metagenomic Approach to Reconstruct the Holo-Genome Of
bioRxiv preprint doi: https://doi.org/10.1101/810986; this version posted October 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. What is in a lichen? A metagenomic approach to reconstruct the holo-genome of Umbilicaria pustulata Bastian Greshake Tzovaras1,2,3, Francisca H.I.D. Segers1,4, Anne Bicker5, Francesco Dal Grande4,6, Jürgen Otte6, Seyed Yahya Anvar7, Thomas Hankeln5, Imke Schmitt4,6,8, and Ingo Ebersberger1,4,6,# 1Applied Bioinformatics Group, Institute of Cell Biology and Neuroscience, Goethe University Frankfurt, Max-von-Laue Str. 13, Frankfurt am Main, 60438, Germany 2Lawrence Berkeley National Laboratory, Berkeley, United States 3Center for Research & Interdisciplinarity, Université de Paris, France 4LOEWE Center for Translational Biodiversity Genomics, Frankfurt, Germany 5 Institute for Organismic and Molecular Evolution, Molecular Genetics and Genome Analysis, Johannes Gutenberg University Mainz, J. J. Becher-Weg 30A, 55128 Mainz, Germany 6Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Senckenberg Anlage 25, 60325 Frankfurt, Germany 7Department of Human Genetics, Leiden University Medical Center, Leiden 2300 RC, Netherlands 8Molecular Evolutionary Biology Group, Institute of Ecology, Diversity, and Evolution, Goethe University Frankfurt, Max-von-Laue Str. 13, Frankfurt am Main, 60438, Germany 1 bioRxiv preprint doi: https://doi.org/10.1101/810986; this version posted October 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. # Correspondence to: [email protected] Keywords: Metagenome-assembled genome, Sequencing error, Symbiosis, Chlorophyta, Mitochondria, Gene loss, organellar ploidy levels 2 bioRxiv preprint doi: https://doi.org/10.1101/810986; this version posted October 21, 2019. -
The Nitrogen-Fixing Symbiotic Cyanobacterium, Nostoc Punctiforme Can Regulate Plant Programmed Cell Death
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.13.249318; this version posted August 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. The nitrogen-fixing symbiotic cyanobacterium, Nostoc punctiforme can regulate plant programmed cell death Samuel P. Belton1,4, Paul F. McCabe1,2,3, Carl K. Y. Ng1,2,3* 1UCD School of Biology and Environmental Science, 2UCD Centre for Plant Science, 3UCD Earth Institute, O’Brien Centre for Science, University College Dublin, Belfield, Dublin, DN04 E25, Republic of Ireland 4Present address: DBN Plant Molecular Laboratory, National Botanic Gardens of Ireland, Dublin, D09 E7F2, Republic of Ireland *email: [email protected] Acknowledgements This work was financially supported by a Government of Ireland Postgraduate Scholarship from the Irish Research Council (GOIPG/2015/2695) to SPB. Author contributions S.P.B., P.F.M, and C.K.Y.N conceived of the study and designed the experiments. S.B. performed all the experiments and analysed the data. S.B. prepared the draft of the manuscript with the help of P.F.M and C.K.Y.N. All authors read, edited, and approved the manuscript. Competing interests The authors declare no competing interests. 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.08.13.249318; this version posted August 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Cyanobacteria such as Nostoc spp. -
Algal Toxic Compounds and Their Aeroterrestrial, Airborne and Other Extremophilic Producers with Attention to Soil and Plant Contamination: a Review
toxins Review Algal Toxic Compounds and Their Aeroterrestrial, Airborne and other Extremophilic Producers with Attention to Soil and Plant Contamination: A Review Georg G¨аrtner 1, Maya Stoyneva-G¨аrtner 2 and Blagoy Uzunov 2,* 1 Institut für Botanik der Universität Innsbruck, Sternwartestrasse 15, 6020 Innsbruck, Austria; [email protected] 2 Department of Botany, Faculty of Biology, Sofia University “St. Kliment Ohridski”, 8 blvd. Dragan Tsankov, 1164 Sofia, Bulgaria; mstoyneva@uni-sofia.bg * Correspondence: buzunov@uni-sofia.bg Abstract: The review summarizes the available knowledge on toxins and their producers from rather disparate algal assemblages of aeroterrestrial, airborne and other versatile extreme environments (hot springs, deserts, ice, snow, caves, etc.) and on phycotoxins as contaminants of emergent concern in soil and plants. There is a growing body of evidence that algal toxins and their producers occur in all general types of extreme habitats, and cyanobacteria/cyanoprokaryotes dominate in most of them. Altogether, 55 toxigenic algal genera (47 cyanoprokaryotes) were enlisted, and our analysis showed that besides the “standard” toxins, routinely known from different waterbodies (microcystins, nodularins, anatoxins, saxitoxins, cylindrospermopsins, BMAA, etc.), they can produce some specific toxic compounds. Whether the toxic biomolecules are related with the harsh conditions on which algae have to thrive and what is their functional role may be answered by future studies. Therefore, we outline the gaps in knowledge and provide ideas for further research, considering, from one side, Citation: G¨аrtner, G.; the health risk from phycotoxins on the background of the global warming and eutrophication and, ¨а Stoyneva-G rtner, M.; Uzunov, B. -
International Journal of Scientific Research and Reviews
Zachariah Sonia Anna et al., IJSRR 2018, 7(3), 1160-1169 Review article Available online www.ijsrr.org ISSN: 2279–0543 International Journal of Scientific Research and Reviews The Lichen Symbiosis: A Review Zachariah Sonia Anna* and Varghese K. Scaria Postgraduate and Research Department of Botany, SB College, Changanacherry, Kerala, INDIA ABSTRACT Organisms belonging to two different kingdoms are mutually associated to form a structure with particular morphology and anatomy. Lichens are not much eye- catching in its external morphology, but spectacular in its internal structure. Morphological studies don’t reveal the mutualistic associations of individual partners while anatomical study reveals the beauty of its symbiotic association. The corroboration of recent studies on lichen and their symbiotic association suggests that, other micro communities such as algae, fungi and bacterial bionts are associated with many lichens in addition to the main photobiont and mycobiont. Microbial association of lichen helps them to develop a stable and successful symbiotic life, which can adapt in its natural habitat. KEYWORDS: Lichen bionts, bacterial bionts, microbial community, symbiotic association *Corresponding author Sonia Anna Zachariah Department of Botany SB College, Changanacherry, Kerala- 686101 Email: [email protected], Mob. 9947841655 IJSRR, 7(3) July – Sep., 2018 Page 1160 Zachariah Sonia Anna et al., IJSRR 2018, 7(3), 1160-1169 INTRODUCTION 1. Lichen: A successful holobiont Lichens are holobionts with more than one participant in the association. They are usually comprised of a filamentous fungal partner called mycobiont and an algal partner called photobiont which can be either a eukaryotic chlorobiont (green algae) or a prokaryotic cyanobiont (cyanobacteria) and a very few are from other classes of algae. -
Does the Lichen Alga Trebouseia Occur Free-Living in Nature: Further Immunological Evidence
Symbiosis, 17 (1994) 247-253 247 Balaban, Philadelphia/Rehovot Does the Lichen Alga Trebouseia Occur Free-Living in Nature: Further Immunological Evidence A. MUKHTAR, J. GARTY* and M. GALUN Department of Botany tuul " Institute for Nature Conservation Research, The George S. Wise Faculty of Life Sciences, Tel-Aviv University, Tel-Aviv 69978, Israel Tel. 972 3 6409163, Fax 972 3 6409380 Received November 29, 1994; Accepted December 19, 1994 Abstract Morphological and immunological methods have revealed free-living Trebouxia cells among the first settlers in an area that has been completely sterilized by a forest fire. These cells could be detected three years after the fire, and before any lichen colony had been established. We provide evidence that these free• living Trebouzia cells are identical by morphological and immunological criteria with the photobiont of Xanthoria parietina and of Buellia sp. that developed in another area of the same region which was exposed to a forest fire four years earlier. It appeared that the X. parietina colony examined contained two ( or more) different Trebouxios. Keywords: lichen, Trebouxia, photobiont, Buellia sp., immunoassay 1. Introduction De Bary (1887) claimed "that lichen algae have become adapted to sym• biosis with fungi and cannot exist in the free-living state." A consequence of this statement would be, that lichens reproduce only vegetatively, by dias• pores which contain both components - the fungus and the alga. There are indeed many lichen species with vegetative reproduction units, such as soredia and isidia (Jahns, 1988). However, a large number of foliose species and the ·0334-5114/94 /$05.50 @1994 Balaban 248 A. -
A First Glimpse at Genes Important to the Azolla–Nostoc Symbiosis
Symbiosis https://doi.org/10.1007/s13199-019-00599-2 AfirstglimpseatgenesimportanttotheAzolla–Nostoc symbiosis Ariana N. Eily1 & Kathleen M. Pryer1 & Fay-Wei Li2 Received: 4 September 2018 /Accepted: 8 January 2019 # Springer Nature B.V. 2019 Abstract Azolla is a small genus of diminutive aquatic ferns with a surprisingly vast potential to benefit the environment and agriculture, as well as to provide insight into the evolution of plant-cyanobacterial symbioses. This capability is derived from the unique relationship Azolla spp. have with their obligate, nitrogen-fixing cyanobacterial symbiont, Nostoc azollae, that resides in their leaves. Although previous work has specified the importance of the exchange of ammonium and sucrose metabolites between these two partners, we have yet to determine the underlying molecular mechanisms that make this symbiosis so successful. The newly sequenced and annotated reference genome of Azolla filiculoides has allowed us to investigate gene expression profiles of A. filiculoides—both with and without its obligate cyanobiont, N. azollae—revealing genes potentially essential to the Azolla-Nostoc symbiosis. We observed the absence of differentially expressed glutamine synthetase (GS) and glutamate synthase (GOGAT) genes, leading to questions about how A. filiculoides regulates the machinery it uses fornitrogenassimilation.UsheringA. filiculoides into the era of transcripto- mics sets the stage to truly begin to understand the uniqueness of the Azolla-Nostoc symbiosis. Keywords Ferns . Nitrogen-assimilation . Nitrogen-fixation . RNA-sequencing . Symbiosis 1 Introduction teraction pathways seen in plants (Oldroyd 2013; Stracke et al. 2002) and they each require that a common symbiosis path- Plant-microbial symbioses have long been of interest to biol- way (CSP) be established (Oldroyd 2013). -
Unravelling the Symbiotic Microalgal Diversity in Buellia Zoharyi (Lichenized Ascomycota) from the Iberian Peninsula and Balearic Islands Using DNA Metabarcoding
diversity Article Unravelling the Symbiotic Microalgal Diversity in Buellia zoharyi (Lichenized Ascomycota) from the Iberian Peninsula and Balearic Islands Using DNA Metabarcoding Patricia Moya * , Salvador Chiva , Arantzazu Molins , Isaac Garrido-Benavent and Eva Barreno Botánica, ICBIBE, Fac. CC. Biológicas, Universitat de València, C/Dr. Moliner, 50, 46100 Valencia, Spain; [email protected] (S.C.); [email protected] (A.M.); [email protected] (I.G.-B.); [email protected] (E.B.) * Correspondence: [email protected]; Tel.: +34-963-544-376 Abstract: Buellia zoharyi is a crustose placodioid lichen, usually occurring on biocrusts of semiarid ecosystems in circum-Mediterranean/Macaronesian areas. In previous work, we found that this lichenized fungus was flexible in its phycobiont choice in the Canary Islands. Here we test whether geography and habitat influence phycobiont diversity in populations of this lichen from the Iberian Peninsula and Balearic Islands using Sanger and high throughput sequencing (HTS). Additionally, three thallus section categories (central, middle and periphery) were analyzed to explore diversity of microalgal communities in each part. We found that B. zoharyi populations hosted at least three different Trebouxia spp., and this lichen can associate with distinct phycobiont strains in different Citation: Moya, P.; Chiva, S.; Molins, habitats and geographic regions. This study also revealed that the Trebouxia composition of this A.; Garrido-Benavent, I.; Barreno, E. lichen showed significant differences when comparing the Iberian Peninsula with the Balearics thalli. Unravelling the Symbiotic Microalgal No support for differences in microalgal communities was found among thallus sections; however, Diversity in Buellia zoharyi several thalli showed different predominant Trebouxia spp. -
Abstract Phylogenetic Analysis of the Symbiotic
ABSTRACT PHYLOGENETIC ANALYSIS OF THE SYMBIOTIC NOSTOC CYANOBACTERIA AS ASSESSED BY THE NITROGEN FIXATION (NIFD) GENE by Hassan S. Salem Members of the genus Nostoc are the most commonly encountered cyanobacterial partners in terrestrial symbiotic systems. The objective of this study was to determine the taxonomic position of the various symbionts within the genus Nostoc, in addition to examining the evolutionary relationships between symbiont and free-living strains within the genus by analyzing the complete sequences of the nitrogen fixation (nif) genes. NifD was sequenced from thirty-two representative strains, and phylogenetically analyzed using the Maximum likelihood and Bayesian criteria. Such analyses indicate at least three well-supported clusters exist within the genus, with moderate bootstrap support for the differentiation between symbiont and free-living strains. Our analysis suggests 2 major patterns for the evolution of symbiosis within the genus Nostoc. The first resulting in the symbiosis with a broad range of plant groups, while the second exclusively leads to a symbiotic relationship with the aquatic water fern, Azolla. PHYLOGENETIC ANALYSIS OF THE SYMBIOTIC NOSTOC CYANOBACTERIA AS ASSESSED BY THE NITROGEN FIXATION (NIFD) GENE A Thesis Submitted to the Faculty of Miami University in partial fulfillment of the requirements for the degree of Master of Science Department of Botany by Hassan S. Salem Miami University Oxford, Ohio 2010 Advisor________________________ (Susan Barnum) Reader_________________________ (Nancy Smith-Huerta) -
Photosynthetic Carbon Acquisition in the Lichen Photobionts Coccomyxa and Trebouxia (Chlorophyta)
PHYSIOLOGIA PLANTARUM 101: 67-76. 1997 Copyright © Physiologia Plantarum 1997 Printed in Dettmark - all rights reserved ISSN 0031-9317 Photosynthetic carbon acquisition in the lichen photobionts Coccomyxa and Trebouxia (Chlorophyta) Kristin Palmqvist, Asuncion de los Rios, Carmen Ascaso and Goran Samuelsson Palmqvist, K., de los Rios, A., Ascaso, C. and Samuelsson, G. 1997. Photosynthetic carbon acquisition in the lichen photobionts Coccomyxa and Trebouxia (Chlorophyta). - Physiol. Plant. 101: 67-76. Processes involved in photosynthetic CO2 acquisition were characterised for the iso- lated lichen photobiont Trebouxia erici (Chlorophyta, Trebouxiophyceae) and com- pared with Coccomyxa (Chlorophyta), a lichen photobiont without a photosynthetic COi-concentrating mechanism. Comparisons of ultrastructure and immuno-gold la- belling of ribulose-1,5-bisphosphate carboxylase-oxygenase (Rubisco; EC 4.1.1.39) showed that the chloroplast was larger in T. erici and that the majority of Rubisco was located in its centrally located pyrenoid. Coccomyxa had no pyrenoid and Rubisco was evenly distributed in its chloroplast. Both species preferred CO2 rather than HCO3 as an external substrate for photosynthesis, but T. erici was able to use CO2 concentra- tions below 10-12 \xM more efficiently than Coccomyxa. In T. erici, the lipid-insolu- ble carbonic anhydrase (CA; EC 4.2.1.1) inhibitor acetazolamide (AZA) inhibited photosynthesis at CO2 concentrations below 1 \xM, while the lipid-soluble CA inhibi- tor ethoxyzolamide (EZA) inhibited C02-dependent O2 evolution over the whole CO2 range. EZA inhibited photosynthesis also in Coccomyxa, but to a much lesser extent below 10-12 |iM CO2. The intemal CA activity of Trebouxia, per unit chlorophyll (Chi), was ca 10% of that of Coccomyxa.