An Outline of 19Th Century Linguistics 1) Beginnings of 19Th
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Greek and Latin Roots, Prefixes, and Suffixes
GREEK AND LATIN ROOTS, PREFIXES, AND SUFFIXES This is a resource pack that I put together for myself to teach roots, prefixes, and suffixes as part of a separate vocabulary class (short weekly sessions). It is a combination of helpful resources that I have found on the web as well as some tips of my own (such as the simple lesson plan). Lesson Plan Ideas ........................................................................................................... 3 Simple Lesson Plan for Word Study: ........................................................................... 3 Lesson Plan Idea 2 ...................................................................................................... 3 Background Information .................................................................................................. 5 Why Study Word Roots, Prefixes, and Suffixes? ......................................................... 6 Latin and Greek Word Elements .............................................................................. 6 Latin Roots, Prefixes, and Suffixes .......................................................................... 6 Root, Prefix, and Suffix Lists ........................................................................................... 8 List 1: MEGA root list ................................................................................................... 9 List 2: Roots, Prefixes, and Suffixes .......................................................................... 32 List 3: Prefix List ...................................................................................................... -
Species Tree Likelihood Computation Given SNP Data Using Ancestral Configurations
Species Tree Likelihood Computation Given SNP Data Using Ancestral Configurations DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Hang Fan, M.S. Graduate Program in Statistics The Ohio State University 2013 Dissertation Committee: Professor Laura Kubatko, Advisor Professor Bryan Carstens Professor Radu Herbei 1 Copyright by Hang Fan 2013 2 Abstract Inferring species trees given genetic data has been a challenge in the field of phylogenetics because of the high intensity during computation. In the coalescent framework, this dissertation proposes an innovative method of estimating the likelihood of a species tree directly from Single Nucleotide Polymorphism (SNP) data with a certain nucleotide substitution model. This method uses the idea of Ancestral Configurations (Wu, 2011) to avoid the computation burden brought by the enumeration of coalescent histories. Importance sampling is used to in Monte Carlo integration to approximate the expectations in the computation, where the accuracy of the approximation is tested in different tree models. The SNP data is processed beforehand which vastly boosts the efficiency of the method. Gene tree sampling given the species tree under the coalescent model is employed to make the computation feasible for large trees. Further, the branch lengths on the species tree are optimized according to the computed species tree likelihood, which provides the likelihood of the species tree topology given the SNP data. For inference, this likelihood computation method is implemented in the stepwise addition algorithm to infer the maximum likelihood species tree in the tree space given the SNP data, and simulations are conduced to test the performance. -
EVOLUTIONARY INFERENCE: Some Basics of Phylogenetic Analyses
EVOLUTIONARY INFERENCE: Some basics of phylogenetic analyses. Ana Rojas Mendoza CNIO-Madrid-Spain. Alfonso Valencia’s lab. Aims of this talk: • 1.To introduce relevant concepts of evolution to practice phylogenetic inference from molecular data. • 2.To introduce some of the most useful methods and computer programmes to practice phylogenetic inference. • • 3.To show some examples I’ve worked in. SOME BASICS 11--ConceptsConcepts ofof MolecularMolecular EvolutionEvolution • Homology vs Analogy. • Homology vs similarity. • Ortologous vs Paralogous genes. • Species tree vs genes tree. • Molecular clock. • Allele mutation vs allele substitution. • Rates of allele substitution. • Neutral theory of evolution. SOME BASICS Owen’s definition of homology Richard Owen, 1843 • Homologue: the same organ under every variety of form and function (true or essential correspondence). •Analogy: superficial or misleading similarity. SOME BASICS 1.Concepts1.Concepts ofof MolecularMolecular EvolutionEvolution • Homology vs Analogy. • Homology vs similarity. • Ortologous vs Paralogous genes. • Species tree vs genes tree. • Molecular clock. • Allele mutation vs allele substitution. • Rates of allele substitution. • Neutral theory of evolution. SOME BASICS Similarity ≠ Homology • Similarity: mathematical concept . Homology: biological concept Common Ancestry!!! SOME BASICS 1.Concepts1.Concepts ofof MolecularMolecular EvolutionEvolution • Homology vs Analogy. • Homology vs similarity. • Ortologous vs Paralogous genes. • Species tree vs genes tree. • Molecular clock. -
The Probability of Monophyly of a Sample of Gene Lineages on a Species Tree
PAPER The probability of monophyly of a sample of gene COLLOQUIUM lineages on a species tree Rohan S. Mehtaa,1, David Bryantb, and Noah A. Rosenberga aDepartment of Biology, Stanford University, Stanford, CA 94305; and bDepartment of Mathematics and Statistics, University of Otago, Dunedin 9054, New Zealand Edited by John C. Avise, University of California, Irvine, CA, and approved April 18, 2016 (received for review February 5, 2016) Monophyletic groups—groups that consist of all of the descendants loci that are reciprocally monophyletic is informative about the of a most recent common ancestor—arise naturally as a conse- time since species divergence and can assist in representing the quence of descent processes that result in meaningful distinctions level of differentiation between groups (4, 18). between organisms. Aspects of monophyly are therefore central to Many empirical investigations of genealogical phenomena have fields that examine and use genealogical descent. In particular, stud- made use of conceptual and statistical properties of monophyly ies in conservation genetics, phylogeography, population genetics, (19). Comparisons of observed monophyly levels to model pre- species delimitation, and systematics can all make use of mathemat- dictions have been used to provide information about species di- ical predictions under evolutionary models about features of mono- vergence times (20, 21). Model-based monophyly computations phyly. One important calculation, the probability that a set of gene have been used alongside DNA sequence differences between and lineages is monophyletic under a two-species neutral coalescent within proposed clades to argue for the existence of the clades model, has been used in many studies. Here, we extend this calcu- (22), and tests involving reciprocal monophyly have been used to lation for a species tree model that contains arbitrarily many species. -
Types and Functions of Reduplication in Palembang
Journal of the Southeast Asian Linguistics Society JSEALS 12.1 (2019): 113-142 ISSN: 1836-6821, DOI: http://hdl.handle.net/10524/52447 University of Hawaiʼi Press TYPES AND FUNCTIONS OF REDUPLICATION IN PALEMBANG Mardheya Alsamadani & Samar Taibah Wayne State University [email protected] & [email protected] Abstract In this paper, we study the morphosemantic aspects of reduplication in Palembang (also known as Musi). In Palembang, both content and function words undergo reduplication, generating a wide variety of semantic functions, such as pluralization, iteration, distribution, and nominalization. Productive reduplication includes full reduplication and reduplication plus affixation, while fossilized reduplication includes partial reduplication and rhyming reduplication. We employed the Distributed Morphology theory (DM) (Halle and Marantz 1993, 1994) to account for these different patterns of reduplication. Moreover, we compared the functions of Palembang reduplication to those of Malay and Indonesian reduplication. Some instances of function word reduplication in Palembang were not found in these languages, such as reduplication of question words and reduplication of negators. In addition, Palembang partial reduplication is fossilized, with only a few examples collected. In contrast, Malay partial reduplication is productive and utilized to create new words, especially words borrowed from English (Ahmad 2005). Keywords: Reduplication, affixation, Palembang/Musi, morphosemantics ISO 639-3 codes: mui 1 Introduction This paper has three purposes. The first is to document the reduplication patterns found in Palembang based on the data collected from three Palembang native speakers. Second, we aim to illustrate some shared features of Palembang reduplication with those found in other Malayic languages such as Indonesian and Malay. The third purpose is to provide a formal analysis of Palembang reduplication based on the Distributed Morphology Theory. -
Outer and Inner Indo-Aryan, and Northern India As an Ancient Linguistic Area
Acta Orientalia 2016: 77, 71–132. Copyright © 2016 Printed in India – all rights reserved ACTA ORIENTALIA ISSN 0001-6483 Outer and Inner Indo-Aryan, and northern India as an ancient linguistic area Claus Peter Zoller University of Oslo Abstract The article presents a new approach to the old controversy concerning the veracity of a distinction between Outer and Inner Languages in Indo-Aryan. A number of arguments and data are presented which substantiate the reality of this distinction. This new approach combines this issue with a new interpretation of the history of Indo- Iranian and with the linguistic prehistory of northern India. Data are presented to show that prehistorical northern India was dominated by Munda/Austro-Asiatic languages. Keywords: Indo-Aryan, Indo-Iranian, Nuristani, Munda/Austro- Asiatic history and prehistory. Introduction This article gives a summary of the most important arguments contained in my forthcoming book on Outer and Inner languages before and after the arrival of Indo-Aryan in South Asia. The 72 Claus Peter Zoller traditional version of the hypothesis of Outer and Inner Indo-Aryan purports the idea that the Indo-Aryan Language immigration1 was not a singular event. Yet, even though it is known that the actual historical movements and processes in connection with this immigration were remarkably complex, the concerns of the hypothesis are not to reconstruct the details of these events but merely to show that the original non-singular immigrations have left revealing linguistic traces in the modern Indo-Aryan languages. Actually, this task is challenging enough, as the long-lasting controversy shows.2 Previous and present proponents of the hypothesis have tried to fix the difference between Outer and Inner Languages in terms of language geography (one graphical attempt as an example is shown below p. -
The Shape of Phylogenetic Trees (Review Paper)
REVIEW PAPER: THE SHAPE OF PHYLOGENETIC TREESPACE KATHERINE ST. JOHN Abstract: Trees are a canonical structure for representing evolutionary histories. Many popular criteria used to infer optimal trees are computationally hard, and the number of possible tree shapes grows super-exponentially in the number of taxa. The underlying structure of the spaces of trees yields rich insights that can improve the search for optimal trees, both in accuracy and running time, and the analysis and visualization of results. We review the past work on analyzing and comparing trees by their shape as well as recent work that incorporates trees with weighted branch lengths. Keywords: tree metrics, treespace, maximum parsimony, maximum likelihood. Tree structures have long been used to represent the evolutionary histories of sets of species. For example, the tips of the trees represent extant species and the internal nodes represent speciation events. Despite its simplicity, the tree model captures much of the complexity of the underlying phenomena. However, the sheer number of possibilities forces many simply presented operations on trees to be computationally hard. For example, the maximum parsimony criteria (Farris, 1970; Fitch, 1971) that seeks the tree with the minimal number of changes across the edges is compu- tationally hard to compute exactly (Foulds and Graham, 1982). The addition of weights on the branches, to denote quantities such as amount of evolutionary change, the time, or the confidence on the existence of the branch, adds complexity to the model (Felsenstein, 1973, 1978). A pop- ular corresponding optimality criteria for weighted trees, the maximum likelihood criteria, is also computationally hard (Roch, 2006). -
Autochthonous Aryans? the Evidence from Old Indian and Iranian Texts
Michael Witzel Harvard University Autochthonous Aryans? The Evidence from Old Indian and Iranian Texts. INTRODUCTION §1. Terminology § 2. Texts § 3. Dates §4. Indo-Aryans in the RV §5. Irano-Aryans in the Avesta §6. The Indo-Iranians §7. An ''Aryan'' Race? §8. Immigration §9. Remembrance of immigration §10. Linguistic and cultural acculturation THE AUTOCHTHONOUS ARYAN THEORY § 11. The ''Aryan Invasion'' and the "Out of India" theories LANGUAGE §12. Vedic, Iranian and Indo-European §13. Absence of Indian influences in Indo-Iranian §14. Date of Indo-Aryan innovations §15. Absence of retroflexes in Iranian §16. Absence of 'Indian' words in Iranian §17. Indo-European words in Indo-Iranian; Indo-European archaisms vs. Indian innovations §18. Absence of Indian influence in Mitanni Indo-Aryan Summary: Linguistics CHRONOLOGY §19. Lack of agreement of the autochthonous theory with the historical evidence: dating of kings and teachers ARCHAEOLOGY __________________________________________ Electronic Journal of Vedic Studies 7-3 (EJVS) 2001(1-115) Autochthonous Aryans? 2 §20. Archaeology and texts §21. RV and the Indus civilization: horses and chariots §22. Absence of towns in the RV §23. Absence of wheat and rice in the RV §24. RV class society and the Indus civilization §25. The Sarasvatī and dating of the RV and the Bråhmaas §26. Harappan fire rituals? §27. Cultural continuity: pottery and the Indus script VEDIC TEXTS AND SCIENCE §28. The ''astronomical code of the RV'' §29. Astronomy: the equinoxes in ŚB §30. Astronomy: Jyotia Vedåga and the -
«Paradigms» in Linguistics and the Problem of the Isomorphism Between the Genetic Code & Semiotic Systems
saqarTvelos mecnierebaTa erovnuli akademiis moambe, t. 3, #2, 2009 BULLETIN OF THE GEORGIAN NATIONAL ACADEMY OF SCIENCES, vol. 3, no. 2, 2009 Linguistics & Semiotics «Paradigms» in Linguistics and the Problem of the Isomorphism between the Genetic Code & Semiotic Systems Thomas V. Gamkrelidze Academy Member, Georgian National Academy of Sciences Dedicated to the 80th Birthday of my friend & colleague Vyacheslav V. Ivanov, an eminent scholar of our time – Linguist, Semiotician, Culture Historian. ABSTRACT. The problem of validity of the notion of «Paradigm» in science (in Thomas Kuhn’s sense of the term) is being much discussed in connection with its application to Humanities and Social Sciences. Notwith- standing some objections to this effect, the notion of «Paradigm» should be considered effective in application to Humanities, especially to Linguistics, enabling us to propose a reasonable historical classification of diverse directions in the Science of Language. © 2009 Bull. Georg. Natl. Acad. Sci. Key words: Paradigm, Paradigms in Linguistics, Biosemiotic Paradigm. We may envisage the history of European (and American) Linguistics as an interchange of certain «Paradigms» existing parallelly, or replacing one another, in space and time that may be presented globally as follows: Paradigm I: Port-Royal Grammar (Grammaire générale et raisonnée) [Antoine Arnaud & Claude Lancelot] Paradigm II: Comparative Historical Linguistics (Franz Bopp; Karl Brugmann & Neogrammarians; Antoine Meillet et al.) Paradigm III: Japhetic Linguistics (Nicholas Marr) Paradigm IV: Linguistique synchronique (Ferdinand de Saussure): a) Phonology & Structural Linguistics (Nicholas Trubetzkoy, Roman Jakobson) b) Descriptive Linguistics (Leonard Bloomfield et al.) c) Structural Typology & Universals of Language (Joseph Greenberg, Irine Melikishvili; Georgi Klimov) © 2009 Bull. Georg. -
Reduplication: Form, Function and Distribution Carl Rubino
Reduplication: Form, function and distribution Carl Rubino The systematic repetition of phonological material within a word for se- mantic or grammatical purposes is known as reduplication, a widely used morphological device in a substantial number of the languages spanning the globe. This paper will provide an overview of the types of reduplicative constructions found in the languages of the world and the functions they portray. Finally, a subset of the world's languages, will be categorized as to whether or not they employ reduplicative constructions productively and illustrated in a world map'. 1. Form For purposes of the accompanying typological map, two types of reduplica- tion are distinguished based on the size of the reduplicant: full vs. partial. Full reduplication is the repetition of an entire word, word stem (root with one or more affixes), or root, e.g. Tausug (Austronesian, Philippines) full word lexical reduplication dayang 'madam' vs. dayangdayang 'princess'; laway 'saliva' vs. laway-laway 'land snail', or full root reduplication, shown here with the verbalizing affixes mag- and -(h)un which do not par- ticipate in the reduplication: mag-bichara 'speak' vs. mag-bichara-bichara 'spread rumors, gossip'; mag-tabid 'twist' vs mag-tabid-tabid 'make cas- sava rope confection'; suga-hun 'be heated by sun' vs. suga-suga-hiin 'de- velop prickly heat rash' (Hassan et al 1994). Partial reduplication may come in a variety of forms, from simple con- sonant gemination or vowel lengthening to a nearly complete copy of a base. In Pangasinan (Austronesian, Philippines) various forms of redupli- cation are used to form plural nouns. -
Root Words from Foreign Languages and Their Use in English
Root words from Foreign Languages and their use in English What is a root word? A root word is the most basic form of a word. In English grammar, a root is a word or portion of a word from which other words grow, usually through the addition of prefixes and suffixes. By learning root words, we can expand our vocabulary and become a better English speaker. What is a root word? Learning just one root word can help us understand several words in English. So, by learning just 20 or 30 root words, we can expand our English vocabulary to include hundreds of new words. What is a root word? A root can be any part of a word that carries meaning: the beginning, middle or end. Prefixes, bases, and suffixes are types of roots. The prefix appears at the beginning of a word, the base in the middle and the suffix at the end. What is a root word? Most English root words came from the Greek and Latin languages. The root of the word "vocabulary," for example, is voc, a Latin root meaning "word" or "name." This root also appears in such words as "advocacy," "convocation,” "vocal”. Latin root words Root Meaning Examples ab to move away abstract, abstain, aversion duc lead, make deduce, produce, educate audi hear audible, audience, auditorium bene good benefit, benign, benefactor brev short abbreviate, brief circ round circus, circulate dict say dictate, edict, dictionary Latin root words Root Meaning Examples fund bottom founder, foundation, funding gen to birth gene, generate, generous lev to lift levitate, elevate, leverage log, logue thought logic, apologize, -
The Lexical Integrity Hypothesis in a New Theoretical Universe
The Lexical Integrity Hypothesis in a New Theoretical Universe Rochelle Lieber University of New Hampshire Sergio Scalise University of Bologna 0. Introduction Twenty five years ago, at the outset of generative morphology, the Lexical Integrity Hypothesis was a widely accepted part of the landscape for morphologists. The LIH, or the Lexicalist Hypothesis came in a number of different forms: (1) Lapointe (1980:8) Generalized Lexicalist Hypothesis No syntactic rule can refer to elements of morphological structure. (2) Selkirk (1982:70) Word Structure Autonomy Condition No deletion of movement transformations may involve categories of both W- structure and S-structure. (3) Di Sciullo & Williams (1987:49) The Atomicity Thesis Words are “atomic” at the level of phrasal syntax and phrasal semantics. The words have “features,” or properties, but these features have no structure, and the relation of theses features to the internal composition of the word cannot be relevant in syntax – this is the thesis of the atomicity of words, or the lexical integrity hypothesis, or the strong lexicalist hypothesis (as in Lapointe 1980), or a version of the lexicalist hypothesis of Chomsky (1970), Williams (1978; 1978a), and numerous others. Although there are slight differences in these formulations, they have a common effect of preventing syntactic rules from looking into and operating on the internal structure of words. It should also be pointed out that at this early stage of discussion, a Weak Lexicalist Hypothesis and a Strong Lexicalist Hypothesis were often distinguished, the former merely stating that transformations could not look into word structure (i.e., derivation and compounding), the latter adding inflection to the domain of the LIH (Spencer 1991:73, 178–9).