Mushroom Poisoning Outbreaks — China, 2019
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Molecular Phylogenetic Studies in the Genus Amanita
1170 Molecular phylogenetic studies in the genus Amanita I5ichael Weiß, Zhu-Liang Yang, and Franz Oberwinkler Abstracl A group of 49 Amanita species that had been thoroughly examined morphologically and amtomically was analyzed by DNA sequence compadson to estimate natural groups and phylogenetic rclationships within the genus. Nuclear DNA sequences coding for a part of the ribosomal large subunit were determined and evaluated using neighbor-joining with bootstrap analysis, parsimony analysis, conditional clustering, and maximum likelihood methods, Sections Amanita, Caesarea, Vaginatae, Validae, Phalloideae, and Amidella were substantially confirmed as monophyletic groups, while the monophyly of section Lepidell.t remained unclear. Branching topologies between and within sections could also pafiially be derived. Stbgenera Amanita an'd Lepidella were not supported. The Mappae group was included in section Validae. Grouping hypotheses obtained by DNA analyses are discussed in relation to the distribution of morphological and anatomical chamcters in the studied species. Key words: fungi, basidiomycetes phylogeny, Agarrcales, Amanita systematics, large subunit rDNA, 28S. R6sum6 : A partir d'un groupe de 49 esp,ces d'Amanita prdalablement examinees morphologiquement et anatomiquement, les auteurs ont utilisd la comparaison des s€quences d'ADN pour ddfinir les groupes naturels et les relations phylog6ndtiques de ce genre. Les sdquences de I'ADN nucl6aire codant pour une partie de la grande sous-unit6 ribosomale ont 6t6 ddterminEes et €valu6es en utilisant l'analyse par liaison en lacet avec le voisin (neighbor-joining with bootstrap), l'analyse en parcimonie, le rcgroupement conditionnel et les m€thodes de ressemblance maximale. Les rdsultats confirment substantiellement les sections Afiarira, Caesarea, Uaqinatae, Ualidae, Phalloideae et Amidella, comme groupes monophyldtiques, alors que la monophylie de la section Lepidella demerxe obscure. -
New Species of Inocybe (Inocybaceae) from Eastern North America1
New species of Inocybe (Inocybaceae) from eastern North America1 Authors: P. Brandon Matheny, and Linas V. Kudzma Source: The Journal of the Torrey Botanical Society, 146(3) : 213-235 Published By: Torrey Botanical Society URL: https://doi.org/10.3159/TORREY-D-18-00060.1 BioOne Complete (complete.BioOne.org) is a full-text database of 200 subscribed and open-access titles in the biological, ecological, and environmental sciences published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Complete website, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/terms-of-use. Usage of BioOne Complete content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Downloaded From: https://bioone.org/journals/The-Journal-of-the-Torrey-Botanical-Society on 09 Sep 2019 Terms of Use: https://bioone.org/terms-of-use Access provided by University of Tennessee Journal of the Torrey Botanical Society 146(3): 213–235, 2019. New species of Inocybe (Inocybaceae) from eastern North America1 P. Brandon Matheny2 Department of Ecology and Evolutionary Biology, University of Tennessee 1406 Circle Drive, Knoxville, TN 37996 USA Linas V. Kudzma 37 Maple Ave., Annandale, NJ 08801 Abstract. Five species of Inocybe from eastern North America are described as new: Inocybe carolinensis, Inocybe dulciolens, Inocybe friabilis, Inocybe glaucescens, and Inocybe vinaceobrunnea. -
<I>Lepiota Brunneoincarnata</I>
ISSN (print) 0093-4666 © 2013. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/126.133 Volume 126, pp. 133–141 October–December 2013 Lepiota brunneoincarnata and L. subincarnata: distribution and phylogeny A. Razaq1*, E.C. Vellinga2, S. Ilyas1 & A.N. Khalid1 1Department of Botany, University of the Punjab, Lahore. 54590, Pakistan 2Department of Plant and Microbial Biology, University of California Berkeley California USA *Correspondence to: [email protected] Abstract — An updated phylogeny of the clade of toxic Lepiota species is presented, and new insights in the distribution of L. brunneoincarnata and L. subincarnata are given. Lepiota brunneoincarnata is widespread in Europe and temperate Asia, and L. subincarnata is now known from Asia, Europe, and North America. Morphological and anatomical descriptions are provided for these two species based on material from the western Himalayan forests in Pakistan, where they are reported for the first time. Keywords — amatoxins, lepiotaceous fungi, mushroom diversity, rDNA Introduction Among lepiotaceous fungi the genus Lepiota (Pers.) Gray (Agaricales, Basidiomycota) has a worldwide distribution and is highly diversified (Bon 1993; Ahmad et al. 1997; Vellinga 2003; Kirk et al. 2008; Razaq et al. 2012; Nawaz et al. 2013). The genus is characterized by having a scaly (rarely smooth) pileus, free lamellae, partial veil in the form of annulus, a universal veil, smooth white dextrinoid spores (in most species), and clamp connections (present in all but one or two species) (Vellinga 2001, Kumar & Manimohan 2009). The nature of the pileus covering elements and the spore shape are very important characters for infrageneric classification (Candusso & Lanzoni 1990; Bon 1993; Vellinga 2001, 2003). -
Molecular Identification of Lepiota Acutesquamosa and L. Cristata
INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY ISSN Print: 1560–8530; ISSN Online: 1814–9596 12–1007/2013/15–2–313–318 http://www.fspublishers.org Full Length Article Molecular Identification of Lepiota acutesquamosa and L. cristata (Basidiomycota, Agaricales) Based on ITS-rDNA Barcoding from Himalayan Moist Temperate Forests of Pakistan Abdul Razaq1*, Abdul Nasir Khalid1 and Sobia Ilyas1 1Department of Botany, University of the Punjab, Lahore 54590, Pakistan *For correspondence: [email protected] Abstract Lepiota acutesquamosa and L. cristata (Basidiomycota, Agaricales) collected from Himalayan moist temperate forests of Pakistan were characterized using internal transcribed spacers (ITS) of rNDA, a fungal molecular marker. The ITS-rDNA of both species was analyzed using polymerase chain reaction (PCR) and DNA sequencing. The target region when amplified using universal fungal primers (ITS1F and ITS4) generated 650-650bp fragments. Consensus sequences of both species were submitted for initial blast analysis which revealed and confirmed the identification of both species by comparing the sequences of these respective species already present in the GenBank. Sequence of Pakistani collection of L. acutesquamosa matched 99% with sequences of same species (FJ998400) and Pakistani L. cristata matched 97% with its sequences (EU081956, U85327, AJ237628). Further, in phylogenetic analysis both species distinctly clustered with their respective groups. Morphological characters like shape, size and color of basidiomata, basidiospore size, basidial lengths, shape and size of cheilocystidia of both collections were measured and compared. Both these species have been described first time from Pakistan on morph-anatomical and molecular basis. © 2013 Friends Science Publishers Keywords: Internal transcribed spacers; Lepiotaceous fungi; Molecular marker; Phylogeny Introduction of lepiotaceous fungi (Vellinga, 2001, 2003, 2006). -
Diversity of MSDIN Family Members in Amanitin-Producing Mushrooms
He et al. BMC Genomics (2020) 21:440 https://doi.org/10.1186/s12864-020-06857-8 RESEARCH ARTICLE Open Access Diversity of MSDIN family members in amanitin-producing mushrooms and the phylogeny of the MSDIN and prolyl oligopeptidase genes Zhengmi He, Pan Long, Fang Fang, Sainan Li, Ping Zhang and Zuohong Chen* Abstract Background: Amanitin-producing mushrooms, mainly distributed in the genera Amanita, Galerina and Lepiota, possess MSDIN gene family for the biosynthesis of many cyclopeptides catalysed by prolyl oligopeptidase (POP). Recently, transcriptome sequencing has proven to be an efficient way to mine MSDIN and POP genes in these lethal mushrooms. Thus far, only A. palloides and A. bisporigera from North America and A. exitialis and A. rimosa from Asia have been studied based on transcriptome analysis. However, the MSDIN and POP genes of many amanitin-producing mushrooms in China remain unstudied; hence, the transcriptomes of these speices deserve to be analysed. Results: In this study, the MSDIN and POP genes from ten Amanita species, two Galerina species and Lepiota venenata were studied and the phylogenetic relationships of their MSDIN and POP genes were analysed. Through transcriptome sequencing and PCR cloning, 19 POP genes and 151 MSDIN genes predicted to encode 98 non- duplicated cyclopeptides, including α-amanitin, β-amanitin, phallacidin, phalloidin and 94 unknown peptides, were found in these species. Phylogenetic analysis showed that (1) MSDIN genes generally clustered depending on the taxonomy of the genus, while Amanita MSDIN genes clustered depending on the chemical substance; and (2) the POPA genes of Amanita, Galerina and Lepiota clustered and were separated into three different groups, but the POPB genes of the three distinct genera were clustered in a highly supported monophyletic group. -
Mushrooms Commonly Found in Northwest Washington
MUSHROOMS COMMONLY FOUND IN NORTHWEST WASHINGTON GILLED MUSHROOMS SPORES WHITE Amanita constricta Amanita franchettii (A. aspera) Amanita gemmata Amanita muscaria Amanita pachycolea Amanita pantherina Amanita porphyria Amanita silvicola Amanita smithiana Amanita vaginata Armillaria nabsnona (A. mellea) Armillaria ostoyae (A. mellea) Armillaria sinapina (A. mellea) Calocybe carnea Clitocybe avellaneoalba Clitocybe clavipes Clitocybe dealbata Clitocybe deceptiva Clitocybe dilatata Clitocybe flaccida Clitocybe fragrans Clitocybe gigantean Clitocybe ligula Clitocybe nebularis Clitocybe odora Hygrophoropsis (Clitocybe) aurantiaca Lepista (Clitocybe) inversa Lepista (Clitocybe) irina Lepista (Clitocybe) nuda Gymnopus (Collybia) acervatus Gymnopus (Collybia) confluens Gymnopus (Collybia) dryophila Gymnopus (Collybia) fuscopurpureus Gymnopus (Collybia) peronata Rhodocollybia (Collybia) butyracea Rhodocollybia (Collybia) maculata Strobilurus (Collybia) trullisatus Cystoderma cinnabarinum Cystoderma amianthinum Cystoderma fallax Cystoderma granulosum Flammulina velutipes Hygrocybe (Hygrophorus) conica Hygrocybe (Hygrophorus) minuiatus Hygrophorus bakerensis Hygrophorus camarophyllus Hygrophorus piceae Laccaria amethysteo-occidentalis Laccaria bicolor Laccaria laccata Lactarius alnicola Lactarius deliciousus Lactarius fallax Lactarius kaufmanii Lactarius luculentus Lactarius obscuratus Lactarius occidentalis Lactarius pallescens Lactarius parvis Lactarius pseudomucidus Lactarius pubescens Lactarius repraesentaneus Lactarius rubrilacteus Lactarius -
Phd. Thesis Sana Jabeen.Pdf
ECTOMYCORRHIZAL FUNGAL COMMUNITIES ASSOCIATED WITH HIMALAYAN CEDAR FROM PAKISTAN A dissertation submitted to the University of the Punjab in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in BOTANY by SANA JABEEN DEPARTMENT OF BOTANY UNIVERSITY OF THE PUNJAB LAHORE, PAKISTAN JUNE 2016 TABLE OF CONTENTS CONTENTS PAGE NO. Summary i Dedication iii Acknowledgements iv CHAPTER 1 Introduction 1 CHAPTER 2 Literature review 5 Aims and objectives 11 CHAPTER 3 Materials and methods 12 3.1. Sampling site description 12 3.2. Sampling strategy 14 3.3. Sampling of sporocarps 14 3.4. Sampling and preservation of fruit bodies 14 3.5. Morphological studies of fruit bodies 14 3.6. Sampling of morphotypes 15 3.7. Soil sampling and analysis 15 3.8. Cleaning, morphotyping and storage of ectomycorrhizae 15 3.9. Morphological studies of ectomycorrhizae 16 3.10. Molecular studies 16 3.10.1. DNA extraction 16 3.10.2. Polymerase chain reaction (PCR) 17 3.10.3. Sequence assembly and data mining 18 3.10.4. Multiple alignments and phylogenetic analysis 18 3.11. Climatic data collection 19 3.12. Statistical analysis 19 CHAPTER 4 Results 22 4.1. Characterization of above ground ectomycorrhizal fungi 22 4.2. Identification of ectomycorrhizal host 184 4.3. Characterization of non ectomycorrhizal fruit bodies 186 4.4. Characterization of saprobic fungi found from fruit bodies 188 4.5. Characterization of below ground ectomycorrhizal fungi 189 4.6. Characterization of below ground non ectomycorrhizal fungi 193 4.7. Identification of host taxa from ectomycorrhizal morphotypes 195 4.8. -
<I>Pinus Albicaulis
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2017 July–September 2017—Volume 132, pp. 665–676 https://doi.org/10.5248/132.665 Amanita alpinicola sp. nov., associated with Pinus albicaulis, a western 5-needle pine Cathy L. Cripps1*, Janet E. Lindgren2 & Edward G. Barge1 1 Plant Sciences and Plant Pathology Department, Montana State University, 119 Plant BioScience Building, Bozeman, MT 59717, USA 2 705 N. E. 107 Street, Vancouver, WA. 98685, USA. * Correspondence to: [email protected] Abstract—A new species, Amanita alpinicola, is proposed for specimens fruiting under high elevation pines in Montana, conspecific with specimens from Idaho previously described under the invalid name, “Amanita alpina A.H. Sm., nom. prov.” Montana specimens originated from five-needle whitebark pine (Pinus albicaulis) forests where they fruit in late spring to early summer soon after snow melt; sporocarps are found mostly half-buried in soil. The pileus is cream to pale yellow with innate patches of volval tissue, the annulus is sporadic, and the volva is present as a tidy cup situated below ragged tissue on the stipe. Analysis of the ITS region places the new species in A. sect Amanita and separates it from A. gemmata, A. pantherina, A. aprica, and the A. muscaria group; it is closest to the A. muscaria group. Key words—Amanitaceae, ectomycorrhizal, ITS sequences, stone pine, taxonomy Introduction In 1954, mycologist Alexander H. Smith informally described an Amanita species from the mountains of western Idaho [see Addendum on p. 676]. He gave it the provisional name Amanita “alpina”, and this name has been used by subsequent collectors of this fungus in Washington, Idaho, and Montana. -
Mycology Praha
f I VO LUM E 52 I / I [ 1— 1 DECEMBER 1999 M y c o l o g y l CZECH SCIENTIFIC SOCIETY FOR MYCOLOGY PRAHA J\AYCn nI .O §r%u v J -< M ^/\YC/-\ ISSN 0009-°476 n | .O r%o v J -< Vol. 52, No. 1, December 1999 CZECH MYCOLOGY ! formerly Česká mykologie published quarterly by the Czech Scientific Society for Mycology EDITORIAL BOARD Editor-in-Cliief ; ZDENĚK POUZAR (Praha) ; Managing editor JAROSLAV KLÁN (Praha) j VLADIMÍR ANTONÍN (Brno) JIŘÍ KUNERT (Olomouc) ! OLGA FASSATIOVÁ (Praha) LUDMILA MARVANOVÁ (Brno) | ROSTISLAV FELLNER (Praha) PETR PIKÁLEK (Praha) ; ALEŠ LEBEDA (Olomouc) MIRKO SVRČEK (Praha) i Czech Mycology is an international scientific journal publishing papers in all aspects of 1 mycology. Publication in the journal is open to members of the Czech Scientific Society i for Mycology and non-members. | Contributions to: Czech Mycology, National Museum, Department of Mycology, Václavské 1 nám. 68, 115 79 Praha 1, Czech Republic. Phone: 02/24497259 or 96151284 j SUBSCRIPTION. Annual subscription is Kč 350,- (including postage). The annual sub scription for abroad is US $86,- or DM 136,- (including postage). The annual member ship fee of the Czech Scientific Society for Mycology (Kč 270,- or US $60,- for foreigners) includes the journal without any other additional payment. For subscriptions, address changes, payment and further information please contact The Czech Scientific Society for ! Mycology, P.O.Box 106, 11121 Praha 1, Czech Republic. This journal is indexed or abstracted in: i Biological Abstracts, Abstracts of Mycology, Chemical Abstracts, Excerpta Medica, Bib liography of Systematic Mycology, Index of Fungi, Review of Plant Pathology, Veterinary Bulletin, CAB Abstracts, Rewicw of Medical and Veterinary Mycology. -
Taxonomy of Hawaiʻi Island's Lepiotaceous (Agaricaceae
TAXONOMY OF HAWAIʻI ISLAND’S LEPIOTACEOUS (AGARICACEAE) FUNGI: CHLOROPHYLLUM, CYSTOLEPIOTA, LEPIOTA, LEUCOAGARICUS, LEUCOCOPRINUS A THESIS SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAIʻI AT HILO IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE IN TROPICAL CONSERVATION BIOLOGY AND ENVIRONMENTAL SCIENCE MAY 2019 By Jeffery K. Stallman Thesis Committee: Michael Shintaku, Chairperson Don Hemmes Nicole Hynson Keywords: Agaricaceae, Fungi, Hawaiʻi, Lepiota, Taxonomy Acknowledgements I would like to thank Brian Bushe, Dr. Dennis Desjardin, Dr. Timothy Duerler, Dr. Jesse Eiben, Lynx Gallagher, Dr. Pat Hart, Lukas Kambic, Dr. Matthew Knope, Dr. Devin Leopold, Dr. Rebecca Ostertag, Dr. Brian Perry, Melora Purell, Steve Starnes, and Anne Veillet, for procuring supplies, space, general microscopic and molecular laboratory assistance, and advice before and throughout this project. I would like to acknowledge CREST, the National Geographic Society, Puget Sound Mycological Society, Sonoma County Mycological Society, and the University of Hawaiʻi Hilo for funding. I would like to thank Roberto Abreu, Vincent Berrafato, Melissa Chaudoin, Topaz Collins, Kevin Dang, Erin Datlof, Sarah Ford, Qiyah Ghani, Sean Janeway, Justin Massingill, Joshua Lessard-Chaudoin, Kyle Odland, Donnie Stallman, Eunice Stallman, Sean Swift, Dawn Weigum, and Jeff Wood for helping collect specimens in the field. Thanks to Colleen Pryor and Julian Pryor for German language assistance, and Geneviève Blanchet for French language assistance. Thank you to Jon Rathbun for sharing photographs of lepiotaceous fungi from Hawaiʻi Island and reviewing the manuscript. Thank you to Dr. Claudio Angelini for sharing data on fungi from the Dominican Republic, Dr. Ulrich Mueller for sharing information on a fungus collected in Panama, Dr. -
Mycorrhizal Fungi of Aspen Forests: Natural Occurrence and Potential Applications
Utah State University DigitalCommons@USU Aspen Bibliography Aspen Research 2001 Mycorrhizal fungi of aspen forests: natural occurrence and potential applications C.L. Cripps Follow this and additional works at: https://digitalcommons.usu.edu/aspen_bib Part of the Forest Sciences Commons Recommended Citation Cripps, CL. 2001. Mycorrhizal fungi of aspen forests: natural occurrence and potential applications. WD Shepperd et al (compilers). Sustaining Aspen in Western Landscapes: Symposium Proceedings. Proceedings RMRS-P-18. U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. Fort Collins, CO. This Contribution to Book is brought to you for free and open access by the Aspen Research at DigitalCommons@USU. It has been accepted for inclusion in Aspen Bibliography by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. Mycorrhizal Fungi of Aspen Forests: Natural Occurrence and Potential Applications Cathy L. Cripps1 Abstract—Native mycorrhizal fungi associated with aspen were surveyed on three soil types in the north-central Rocky Mountains. Selected isolates were tested for the ability to enhance aspen seedling growth in vitro. Over 50 species of ectomycorrhizal fungi occur with Populus tremuloides in this region, primarily basidiomycete fungi in the Agaricales. Almost one-third (30%) were ubiquitous with aspen and were found on all three soil types. Over one-third (37%) were restricted to the acidic, sandy soil of the smelter-impacted Butte-Anaconda area, revealing a subset of fungi that tolerate these conditions. Mycorrhizal fungi were screened for their ability to enhance aspen growth and establishment. Of nine selected isolates, all but one increased the biomass of aspen seedlings 2–4 times. -
Mycosphere Essays 15. Ganoderma Lucidum - Are the Beneficial Medical Properties Substantiated?
Mycosphere 7 (6): 687–715 (2016) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2016 Online Edition Doi 10.5943/mycosphere/7/6/1 Mycosphere Essays 15. Ganoderma lucidum - are the beneficial medical properties substantiated? Hapuarachchi KK1,2,3, Wen TC1, Jeewon R4, Wu XL5 and Kang JC1 1The Engineering Research Center of Southwest Bio–Pharmaceutical Resource Ministry of Education, Guizhou University, Guiyang 550025, Guizhou Province, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 4Department of Health Sciences, Faculty of Science, University of Mauritius, Mauritius, 80837 5Guizhou Academy of Sciences, Guiyang, 550009, Guizhou Province, China Hapuarachchi KK, Wen TC, Jeewon R, Wu XL, Kang JC. 2016 – Mycosphere Essays 15. Ganoderma lucidum - are the beneficial medical properties substantiated?. Mycosphere 7(6), 687– 715, Doi 10.5943/mycosphere/7/6/1 Abstract Ganoderma lucidum, commonly treated as Lingzhi mushroom, is a traditional Chinese medicine which has been widely used over two millennia in Asian countries for maintaining vivacity and longevity. Numerous publications can be found reporting that G. lucidum may possess various beneficial medical properties and contributes to a variety of biological actions by primary metabolites, such as polysaccharides, proteins and triterpenes. Although G. lucidum still remains as a popular agent in commercial products, there is a lack of scientific study on the safety and effectiveness of G. lucidum in humans. There have been some reports of human trials using G. lucidum as a direct control agent for various diseases including arthritis, asthma, diabetes, gastritis, hepatitis, hypertension and neurasthenia, but scientific evidence is still inconclusive.