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Summary of Registrations for Web 2 8 2016.Xlsx Registration Lead Centre Co‐lead Centre Lead Last Name Lead First Name Lead Institution Co‐Lead(s) Project Title Research Keywords No. 11601 Genome Ontario Beiko Rob Dalhousie University Andrew McArthur Rapid prediction of antimicrobial resistance from metagenomics samples: data, metagenomic profiling, phenotype prediction, antimicrobial Atlantic Genomics Fiona Brinkman models, and methods resistance 11602 Genome Beiko Rob Dalhousie University Graham Gagnon Comprehensive real‐time analysis of sequences in a hurry (CRASH): Algorithms, Comparative microbial genomics, multi‐omic analysis, real‐time Atlantic Fiona Brinkman software and databases to support real‐time metagenomic analysis of sequence 11603 Genome Bertrand Erin Dalhousie University Rob Beiko From next generation sequencing to quantitative proteomic assay development microbial community and microbiome function, protein Atlantic Douglas Campbell in microbial systems dynamics, multiomic analyses, interdisciplinary knowledge 11604 Genome Bielawski Joe Dalhousie University Hong Gu Novel analytical methods for personalized predictive care of complex diseases Metagenomics, Human genetics, Inflammatory bowel disease, Atlantic Toby Kenney associated with dysbiosis of the human microbiome Predictive modeling, Personalized clinical care 11605 Genome Hu Ting Memorial University Guangju Zhai Evolutionary computing approach to detecting and characterizing heterogeneity Gene‐gene interaction; Epistasis; Heterogeneity; Genetic Atlantic and epitasis in genome‐wide association studies association 11606 Genome Langille Morgan Dalhousie University Daniel Gaston Creation of a human microbiome interaction knowledge base microbiome, metagenomics, human genetics, interactions, Atlantic disease 11607 Genome Myles Sean Dalhousie University A tool to maximize the impact of genotype imputation Next‐generation DNA sequencing; Genome‐wide association Atlantic studies; 11608 Genome Pena‐Castillo Lourdes Memorial University Michael Woods Characterizing and analyzing genetic variation of the Newfoundland population Human genetic variation, population genomics, population Atlantic genetics, 11201 Genome Dinu Irina University of Alberta A bioinformatics platform for handling and analysis of large data generated by Microbiome, OMICS, multivariate continuous phenotypes, high Alberta biotechnologies, including complex study designs dimensionality 11202 Genome Han Jie University of Alberta Hasan Uludag Tools and Methodologies for the Analysis and Validation of Cancer Networks and Cancer genomics, gene network, Signaling pathway, Drug target Alberta Pathways toward Personalized Medicine identification, Personalized medicine 11203 Genome Hazes Bart University of Alberta Paulo Nuin Next generation sequencing pipeline for clinical diagnostics and surveillance Mitochondrial disease diagnostics, Haplotype determination, Alberta Viral pathogen diagnostics, genotyping, Single Nucleotide 11204 Genome Long Quan University of Calgary Method development for large structural variants discovery using related species Plant genome sequencing; Structural variants discovery; False Alberta positive control; Mutational trajectory; 11205 Genome Long Quan University of Calgary Method development for genomic variant discovery leveraging within‐host Genomic variant discovery; False positive control; Private Alberta population genetics mutation; Precision medicine 11206 Genome Schriemer David University of Calgary Marc Strous Development of informatics solutions for microbiome research using the Mass Pan‐omics, microbiome. Alberta Spec Studio 11207 Genome Tieleman Peter University of Calgary Justin MacCallum MD Access Biochemistry, biophysics, biotechnology, platform technology Alberta 11208 Genome Winsor Robin Cybera Jason DeKoning Container based, interoperable genomics workflow for analytics Genomics workflows, reproducible analytics Alberta Jordan Engbers 11209 Genome Wishart David University of Alberta Novel Informatics Tools for Multi‐omics Biomarker Discovery and Validation Biomarker identification, biomarker databases, disease Alberta identification 11210 Genome Wishart David University of Alberta Automated Compound Identification and Quantification for Multiple Metabolomics, compound identification, compound Alberta Metabolomics Platforms quantification, automation 11211 Genome Yang Rong‐Cai University of Alberta Development of Virtual Cross Platform (VCP) for multiple trait genomic selection Statistical genomics, computational biology, cereal breeding, Alberta in plant breeding genomic selection, quantitative genetics, bioinformatics 11101 Genome BC Birol Inanc BC Cancer Agency New bioinformatics for new sequencing technologies: Genome characterization genome assembly; transcriptome assembly; sequence alignment; and variation detection using long reads variant 11102 Genome BC Birol Inanc BC Cancer Agency Caren Helbing Mining the bullfrog genome for novel cancer drugs and antibiotics anticancer drug discovery; cancer therapy; antimicrobial compound 11103 Genome BC Borchers Christoph University of Victoria MADpipe – Multiple and parallel reaction monitoring Assay Design and analysis Automation, information integration, workflow, targeted pipeline proteomics, absolute quantification 11104 Genome BC Breden Felix Simon Fraser University Jamie Scott iReceptor: Integration of Adaptive Immune Receptor Repertoire Data for Immune repertoires; vaccines, therapeutics, cancer Biomedical Research and Patient Care immunotherapy; 11105 Genome BC Brinkman Ryan BC Cancer Agency Cedric Chauve Automated analysis of big flow cytometry data International Mouse Phenotyping Consortium, Inflammatory Sara Mostafavi Bowel Disease, gene function, immunology, personalized 11106 Genome BC Chindelevitch Leonid Simon Fraser University William Hsiao Calibrated multi‐variant genomic analysis for public health microbiology infectious disease, epidemiology, genomic evolution, WGS, data Cedric Chauve integration 11107 Genome BC Friedman Jan University of British Inanc Birol Improving the sensitivity of whole genome sequencing as a clinical test for Clinical testing, structural variants, trinucleotide repeats, copy Columbia genetic causes of intellectual disability number 11108 Genome BC Hallam Steve University of British Global scale metabolic pathway reconstruction from environmental genomes Metagenomics, environmental genomics, microbial systems Columbia ecology, biological engineering, bioeconomy 11109 Genome BC Hancock Bob University of British Fiona Brinkman Integrative Network‐based Analysis of Host‐Pathogen Interactions Molecular interactions, data integration, host‐pathogen Columbia interactions, 11110 Genome BC Hirst Martin University of British Steven Jones Epigenomic Tool Development Epigenomics, DNA methylation, Histone Modification, Software Columbia Development 11111 Genome BC Ontario Hsaio William University of British Andrew McArthur Genomic Epidemiology Application Ontology (GenEpiO) Genomic Epidemiology, Antimicrobial Resistance, Ontology Genomics Columbia Development 11112 Genome BC Huntsman David University of British Robust clustering of genomic data for cancer subtype discovery Class discovery, cancer subtype, clustering, unsupervised Columbia learning, cluster 11113 Genome BC Lorincz Matt University of British Mohammad Mahdi An interactive cloud‐enabled visual platform for systematic analysis of large‐scale epigenomics, transcriptomics, next generation sequencing, Columbia Karimi sequencing datasets differential 11114 Genome BC Paci Irina University of Victoria Connectivity tools for bridging bioinformatics, biomolecular simulations and Data analysis, protein‐ligand interaction, genetic expression, risk Omics‐informed drug design and diagnosis alleles, 11115 Genome BC Pavlidis Paul University of British An interactive web‐based system for exploration of complex phenome‐genome whole genome sequencing, whole exome sequencing, Human Columbia datasets genetics, deep phenotyping, genome‐phenome analysis 11116 Genome BC Poon Art University of British Kamphir ‐ an open‐source software package for phylodynamics with approximate phylodynamics, virus evolution, molecular epidemiology, Columbia Bayesian computation speciation, network modeling 11117 Genome BC Poon Art University of British Kive: A new framework for the automation and version control of bioinformatic translational bioinformatics, clinical genomics, next‐generation Columbia pipelines and data sequencing 11118 Genome BC Ritland Kermit University of British Sequencing error and identification of true haplotype Bioinformatics, haplotype inference Columbia 11119 Genome BC Sahinalp Cenk Simon Fraser University Colin Collins Novel Algorithms for Detecting the Clonal Composition and Monitoring the Clonality detection, monitoring tumor evolution, copy number Clonal Evolution of Tumors via Liquid Biopsies variation detection, liquid biopsy analysis, potential application to 11120 Genome BC Shah Sohrab University of British Genome analytics for cancer population dynamics at single cell resolution Single cell sequencing, statistical modeling, Bayesian statistics, Columbia tumour evolution, cancer population dynamics 11121 Genome BC Tebbutt Scott University of British RNA‐seq tools for cell type‐specific deconvolution in peripheral whole blood Whole blood transcriptome; Leukocyte counts and differentials; Columbia Deconvolution; Cell‐specific gene expression; Immune cell profiles 11122 Genome BC Upton Chris University of Victoria A database to support comparative genomics analyses of
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