Molecular Cloning of CD31, a Putative Intercellular Adhesion Molecule Closely Related to Carcinoembryonic Antigen
Total Page:16
File Type:pdf, Size:1020Kb

Load more
Recommended publications
-
Screening and Identification of Key Biomarkers in Clear Cell Renal Cell Carcinoma Based on Bioinformatics Analysis
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.21.423889; this version posted December 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Screening and identification of key biomarkers in clear cell renal cell carcinoma based on bioinformatics analysis Basavaraj Vastrad1, Chanabasayya Vastrad*2 , Iranna Kotturshetti 1. Department of Biochemistry, Basaveshwar College of Pharmacy, Gadag, Karnataka 582103, India. 2. Biostatistics and Bioinformatics, Chanabasava Nilaya, Bharthinagar, Dharwad 580001, Karanataka, India. 3. Department of Ayurveda, Rajiv Gandhi Education Society`s Ayurvedic Medical College, Ron, Karnataka 562209, India. * Chanabasayya Vastrad [email protected] Ph: +919480073398 Chanabasava Nilaya, Bharthinagar, Dharwad 580001 , Karanataka, India bioRxiv preprint doi: https://doi.org/10.1101/2020.12.21.423889; this version posted December 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Clear cell renal cell carcinoma (ccRCC) is one of the most common types of malignancy of the urinary system. The pathogenesis and effective diagnosis of ccRCC have become popular topics for research in the previous decade. In the current study, an integrated bioinformatics analysis was performed to identify core genes associated in ccRCC. An expression dataset (GSE105261) was downloaded from the Gene Expression Omnibus database, and included 26 ccRCC and 9 normal kideny samples. Assessment of the microarray dataset led to the recognition of differentially expressed genes (DEGs), which was subsequently used for pathway and gene ontology (GO) enrichment analysis. -
Anti-Human CD31 (EPR3094)-151Eu
PRD025-3151025D PRODUCT INFORMATION SHEET Anti-Human CD31/PECAM-1-151Eu Pathologist-Verified Clone for Imaging Mass Cytometry™ Catalog: 3151025D Clone: EPR3094 Package size and concentration: 25 µg, 0.5 mg/mL Isotype: Rabbit IgG Storage: Store at 4 °C. Do not freeze. Formulation: Antibody stabilizer with 0.05% sodium azide Reactivity: Human Application: IMC-Paraffin Technical Information Application: The metal-tagged antibody is designed and formulated for the application of Imaging Mass Cytometry (IMC™) using the Fluidigm Hyperion™ Imaging System on formalin-fixed, paraffin-embedded (FFPE) tissue sections. Quality control: Each lot of conjugated antibody is quality control- tested by Imaging Mass Cytometry on tissue sections. Recommended concentration: For optimal performance it is recommended that the antibody be titrated for the desired application. Suggested initial dilution range: IMC-Paraffin: 1:50 to 1:200 Description CD31, also known as platelet endothelial cell adhesion molecule-1 (PECAM-1) or endoCAM, is a type I transmembrane glycoprotein. It is expressed by endothelial cells on blood vessels, as well as by monocytes, granulocytes, platelets and a small subset of T cells. It plays a role in wound healing, angiogenesis and removal of aged neutrophils and in cellular migration in an inflammatory situation. Human spleen (FFPE) stained with 151Eu-anti-CD31 (EPR3094) at a dilution of 1:100 (green pseudocolor), 141Pr-anti-αSMA (1A4) (red pseudocolor), and iridium DNA intercalator (blue pseudocolor). Heat-mediated antigen retrieval was performed using Tris/EDTA buffer pH 9. Scale bar size = 100 µm. References Chang, Q. et al. "Staining of frozen and formalin-fixed, paraffin-embedded tissues with metal-labeled antibodies for imaging mass cytometry analysis." Current Protocols in Cytometry 82 (2017): 12.47.1–12.47.8. -
Clinical and Biological Characteristics of Medullary and Extramedullary Plasma Cell Dyscrasias
biology Article Clinical and Biological Characteristics of Medullary and Extramedullary Plasma Cell Dyscrasias Snjezana Janjetovic 1,2, Philipp Lohneis 3,4, Axel Nogai 5, Derya Balci 5,6, Leo Rasche 7, Doris Jähne 8, Carsten Bokemeyer 1, Georgia Schilling 1,9, Igor Wolfgang Blau 5,10 and Martin Schmidt-Hieber 2,5,11,* 1 Department of Oncology, Hematology and Bone Marrow Transplantation with Section Pneumology, University Clinic Hamburg-Eppendorf, 20251 Hamburg, Germany; [email protected] (S.J.); [email protected] (C.B.); [email protected] (G.S.) 2 Clinic of Hematology and Stem Cell Transplantation, HELIOS Clinic Berlin-Buch, 13125 Berlin, Germany 3 Institute of Pathology, Charité University Medicine Berlin, 10117 Berlin, Germany; [email protected] 4 Institute of Pathology, University of Cologne, 50923 Cologne, Germany 5 Clinic of Hematology, Oncology and Tumor Immunology, Campus Benjamin Franklin, Charité University Medicine Berlin, 12203 Berlin, Germany; [email protected] (A.N.); [email protected] (D.B.); [email protected] (I.W.B.) 6 St. Joseph Hospital Berlin-Tempelhof, 12101 Berlin, Germany 7 Department of Internal Medicine II, University Hospital Würzburg, 97080 Würzburg, Germany; [email protected] 8 Institute of Pathology, HELIOS Clinic Berlin-Zehlendorf, 14165 Berlin, Germany; [email protected] 9 Citation: Janjetovic, S.; Lohneis, P.; Department of Hematology, Oncology, Palliative Care and Rheumatology, Asklepios Hospital Altona, Asklepios Tumorzentrum, 22763 Hamburg, Germany Nogai, A.; Balci, D.; Rasche, L.; 10 Clinic of Hematology, Oncology and Tumor Immunology, Campus Virchow Klinikum, Charité University Jähne, D.; Bokemeyer, C.; Medicine Berlin, 10117 Berlin, Germany Schilling, G.; Blau, I.W.; 11 Clinic of Hematology and Oncology, Carl-Thiem-Klinikum, 03048 Cottbus, Germany Schmidt-Hieber, M. -
Prediction of Distant Metastasis by Using Reverse Transcriptase Polymerase Chain Reaction for Epithelial and Variant CD44 Mrna I
ORIGINAL ARTICLE Prediction of Distant Metastasis by Using Reverse Transcriptase–Polymerase Chain Reaction for Epithelial and Variant CD44 mRNA in the Peripheral Blood of Patients With Colorectal Cancer Shozo Yokoyama, MD; Hiroki Yamaue, MD Background: Reverse transcriptase–polymerase chain Main Outcome Measure: The clinical significance of reaction (RT-PCR) has been used to identify small num- RT-PCR for epithelial and variant CD44 mRNA in pe- bers of tumor cells. Molecular detection is thought to pro- ripheral blood. vide useful information for the clinical management of postoperative adjuvant therapy regimens. Results: During 3 years of follow-up, 2 patients whose peripheral blood had carcinoembryonic antigen and Objective: To use RT-PCR to identify messenger RNA CD44 variant mRNA also had distant metastases (lung (mRNA) coding for carcinoembryonic antigen, epithelial or spleen). Expression of epithelial and variant CD44 and variant CD44, and matrix metalloproteinase 7 in the mRNA in peripheral blood was more highly correlated portal venous and peripheral blood of patients with colo- with the clinical cancer stage than with expression rectal carcinoma to predict live or distant metastasis. of carcinoembryonic antigen and matrix metallopro- teinase 7. Design: Prospective consecutive series. Conclusions: Molecular detection of epithelial and Setting: University hospital. variant CD44 mRNA in the peripheral blood may help determine distant metastases in patients with colorectal Patients and Methods: Portal venous and peripheral carcinoma. Molecular detection in the peripheral blood blood samples were obtained from 22 patients with colo- at surgical treatment suggests that systemic hemato- rectal cancer during surgical manipulation. Using comple- genic tumor cell dissemination is an early event of dis- mentary DNA primers specific for carcinoembryonic tant metastasis. -
ORIGINAL ARTICLE Flow Cytometric Protein Expression Profiling As a Systematic Approach for Developing Disease-Specific Assays
Leukemia (2006) 20, 2102–2110 & 2006 Nature Publishing Group All rights reserved 0887-6924/06 $30.00 www.nature.com/leu ORIGINAL ARTICLE Flow cytometric protein expression profiling as a systematic approach for developing disease-specific assays: identification of a chronic lymphocytic leukaemia-specific assay for use in rituximab-containing regimens AC Rawstron, R de Tute, AS Jack and P Hillmen Haematological Malignancy Diagnostic Service (HMDS), Leeds Teaching Hospitals, Leeds, UK Depletion of disease below the levels detected by sensitive sustained remissions only occur in patients achieving an MRD- minimal residual disease (MRD) assays is associated with negative complete response.12 Therefore MRD is increasingly prolonged survival in chronic lymphocytic leukaemia (CLL). being used as an end point for therapeutic trials, and several Flow cytometric MRD assays are now sufficiently sensitive and rapid to guide the duration of therapy in CLL, but generally rely studies are now using the assessment of MRD to define the on assessment of CD20 expression, which cannot be accurately duration of therapy. measured during and after therapeutic approaches containing Approaches using allele-specific oligonucleotide polymerase rituximab. The aim of this study was to use analytical software chain reaction (ASO-PCR) to the immunoglobulin gene of the developed for microarray analysis to provide a systematic B-CLL cell are generally accepted to show the highest sensitivity approach for MRD flow assay development. Samples from CLL for MRD detection. However, more recent four-colour ap- patients (n ¼ 49), normal controls (n ¼ 21) and other B-lympho- proaches show sensitivities nearing that of ASO-PCR6,11,13 with proliferative disorders (n ¼ 12) were assessed with a panel of 66 antibodies. -
Clinical Significance of Soluble CD31 in Patients with Systemic
Clinical Significance of Soluble CD31 in Patients with Systemic Sclerosis (SSc): Association with Limited Cutaneous SSc SHINICHI SATO, KAZUHIRO KOMURA, MINORU HASEGAWA, MANABU FUJIMOTO, and KAZUHIKO TAKEHARA ABSTRACT. Objective. To determine serum levels of soluble CD31 (sCD31) and its clinical associations in patients with systemic sclerosis (SSc). Methods. Serum sCD31 levels from 70 patients with SSc were examined by ELISA. For a longitu- dinal study, 64 sera from 17 SSc patients were analyzed (followup: 0.4–3.9 yrs). Results. Serum sCD31 levels were elevated in patients with SSc (n = 70) compared with healthy controls (n = 20) and patients with systemic lupus erythematosus (n = 15). Serum sCD31 levels were higher in patients with limited cutaneous SSc (lSSc; n = 37) than those with diffuse cutaneous SSc (n = 33). Patients with elevated sCD31 levels had pulmonary fibrosis and decreased percentage vital capacity (%VC) less frequently than those with normal sCD31 levels. sCD31 levels correlated posi- tively with %VC in patients with SSc. This association of elevated sCD31 levels with the lower frequency of pulmonary involvement and better %VC was still observed when analyzed among lSSc patients alone. The elevation of sCD31 was associated with shorter disease duration in patients with lSSc. In a longitudinal study, 75% of patients with SSc showed increased sCD31 levels only tran- siently in the early phase of the disease. Serum sCD31 levels remained normal during followup in all patients with normal sCD31 levels at the first visit. Conclusion. Elevated sCD31 levels were associated with lSSc with relatively early onset and lower frequency and severity of pulmonary fibrosis. -
CD44 Predicts Early Recurrence in Pancreatic Cancer Patients Undergoing Radical Surgery
in vivo 32 : 1533-1540 (2018) doi:10.21873/invivo.11411 CD44 Predicts Early Recurrence in Pancreatic Cancer Patients Undergoing Radical Surgery CHIH-PO HSU 1* , LI-YU LEE 2* , JUN-TE HSU 1, YU-PAO HSU 1, YU-TUNG WU 1, SHANG-YU WANG 1, CHUN-NAN YEH 1, TSE-CHING CHEN 2 and TSANN-LONG HWANG 1 1Department of General Surgery, Chang Gung Memorial Hospital at Linkou, Chang Gung University College of Medicine, Taoyuan, Taiwan, R.O.C.; 2Department of Pathology, Chang Gung Memorial Hospital at Linkou, Chang Gung University College of Medicine, Taoyuan, Taiwan, R.O.C. Abstract. Background/Aim: Pancreatic ductal adeno- predicted ER. Conclusion: High CA19-9 levels, CD44 H- carcinoma (PDAC) is one of the most aggressive types of scores and poor differentiation are independent predictors digestive cancer. Recurrence within one year after surgery is for ER in PDAC patients undergoing radical resection. inevitable in most PDAC patients. Recently, cluster of Therefore, the determination of CD44 expression might help differentiation 44 (CD44) has been shown to be associated in identifying patients at a high risk of ER for more with tumor initiation, metastasis and prognosis. This study aggressive treatment after radical surgery. aimed to explore the correlation of CD44 expression with clinicopathological factors and the role of CD44 in Pancreatic ductal adenocarcinoma (PDAC) is the fourth most predicting early recurrence (ER) in PDAC patients after common cause of cancer-related death worldwide, with an radical surgery. Materials and Methods: PDAC patients who 8% 5-year survival rate for all stages of disease (1). underwent radical resection between January 1999 and Although various treatment modalities are available, only March 2015 were enrolled in this study. -
Supplementary Table 1: Adhesion Genes Data Set
Supplementary Table 1: Adhesion genes data set PROBE Entrez Gene ID Celera Gene ID Gene_Symbol Gene_Name 160832 1 hCG201364.3 A1BG alpha-1-B glycoprotein 223658 1 hCG201364.3 A1BG alpha-1-B glycoprotein 212988 102 hCG40040.3 ADAM10 ADAM metallopeptidase domain 10 133411 4185 hCG28232.2 ADAM11 ADAM metallopeptidase domain 11 110695 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 195222 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 165344 8751 hCG20021.3 ADAM15 ADAM metallopeptidase domain 15 (metargidin) 189065 6868 null ADAM17 ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme) 108119 8728 hCG15398.4 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 117763 8748 hCG20675.3 ADAM20 ADAM metallopeptidase domain 20 126448 8747 hCG1785634.2 ADAM21 ADAM metallopeptidase domain 21 208981 8747 hCG1785634.2|hCG2042897 ADAM21 ADAM metallopeptidase domain 21 180903 53616 hCG17212.4 ADAM22 ADAM metallopeptidase domain 22 177272 8745 hCG1811623.1 ADAM23 ADAM metallopeptidase domain 23 102384 10863 hCG1818505.1 ADAM28 ADAM metallopeptidase domain 28 119968 11086 hCG1786734.2 ADAM29 ADAM metallopeptidase domain 29 205542 11085 hCG1997196.1 ADAM30 ADAM metallopeptidase domain 30 148417 80332 hCG39255.4 ADAM33 ADAM metallopeptidase domain 33 140492 8756 hCG1789002.2 ADAM7 ADAM metallopeptidase domain 7 122603 101 hCG1816947.1 ADAM8 ADAM metallopeptidase domain 8 183965 8754 hCG1996391 ADAM9 ADAM metallopeptidase domain 9 (meltrin gamma) 129974 27299 hCG15447.3 ADAMDEC1 ADAM-like, -
Clinical Significance of Soluble CD31 in Patients with Systemic Sclerosis
Clinical Significance of Soluble CD31 in Patients with Systemic Sclerosis (SSc): Association with Limited Cutaneous SSc SHINICHI SATO, KAZUHIRO KOMURA, MINORU HASEGAWA, MANABU FUJIMOTO, and KAZUHIKO TAKEHARA ABSTRACT. Objective. To determine serum levels of soluble CD31 (sCD31) and its clinical associations in patients with systemic sclerosis (SSc). Methods. Serum sCD31 levels from 70 patients with SSc were examined by ELISA. For a longitu- dinal study, 64 sera from 17 SSc patients were analyzed (followup: 0.4–3.9 yrs). Results. Serum sCD31 levels were elevated in patients with SSc (n = 70) compared with healthy controls (n = 20) and patients with systemic lupus erythematosus (n = 15). Serum sCD31 levels were higher in patients with limited cutaneous SSc (lSSc; n = 37) than those with diffuse cutaneous SSc (n = 33). Patients with elevated sCD31 levels had pulmonary fibrosis and decreased percentage vital capacity (%VC) less frequently than those with normal sCD31 levels. sCD31 levels correlated posi- tively with %VC in patients with SSc. This association of elevated sCD31 levels with the lower frequency of pulmonary involvement and better %VC was still observed when analyzed among lSSc patients alone. The elevation of sCD31 was associated with shorter disease duration in patients with lSSc. In a longitudinal study, 75% of patients with SSc showed increased sCD31 levels only tran- siently in the early phase of the disease. Serum sCD31 levels remained normal during followup in all patients with normal sCD31 levels at the first visit. Conclusion. Elevated sCD31 levels were associated with lSSc with relatively early onset and lower frequency and severity of pulmonary fibrosis. -
The Role of the Carcinoembryonic Antigen Receptor in Colorectal Cancer Progression
gra nte tive f I O o l n a c o n r l o u g o y J Bajenova et al., J Integr Oncol 2017, 6:2 Journal of Integrative Oncology DOI: 10.4172/2329-6771.1000192 ISSN: 2329-6771 Research Article Open Access The Role of the Carcinoembryonic Antigen Receptor in Colorectal Cancer Progression Olga Bajenova1,2, Elena Tolkunova3, Sergey Koshkin3, Sergey Malov1, Peter Thomas4, Alexey Tomilin3 and Stephen O’Brien1 1Theodosius Dobzhansky Center for Genome Bioinformatics at St. Petersburg State University, St. Petersburg, Russia 2Department of Genetics and Biotechnology, St. Petersburg State University, St. Petersburg, Russia 3Institute of Cytology, Russian Academy of Sciences, St. Petersburg, Russia 4Department of Surgery, Creighton University, Omaha, USA *Corresponding author: Olga Bajenova, Theodosius Dobzhansky Center for Genome Bioinformatics at St. Petersburg State University, 41-43 Sredniy Prospekt, St Petersburg, Russia, Tel: +7-812-363-6103; E-mail: [email protected] Received Date: March 25, 2017; Accepted Date: April 18, 2017; Published Date: April 28, 2017 Copyright: © 2017 Bajenova O, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract Clinical and experimental data suggest that carcinoembryonic antigen (CEA, CD66e, CEACAM-5) plays a key role in the formation of hepatic metastasis from colorectal and other types of epithelial cancers. The molecular events involved in CEA-induced metastasis have yet to be defined. Our group first cloned the gene (CEAR) for CEA- binding protein from the surface of fixed liver macrophages, (Kupffer cells). -
Soluble Carcinoembryonic Antigen Activates Endothelial Cells and Tumor Angiogenesis
Published OnlineFirst October 11, 2013; DOI: 10.1158/0008-5472.CAN-13-0123 Cancer Microenvironment and Immunology Research Soluble Carcinoembryonic Antigen Activates Endothelial Cells and Tumor Angiogenesis Kira H. Bramswig1, Marina Poettler1, Matthias Unseld1, Friedrich Wrba2, Pavel Uhrin3, Wolfgang Zimmermann4, Christoph C. Zielinski1, and Gerald W. Prager1 Abstract Carcinoembryonic antigen (CEA, CD66e, CEACAM-5) is a cell-surface–bound glycoprotein overexpressed and released by many solid tumors that has an autocrine function in cancer cell survival and differentiation. Soluble CEA released by tumors is present in the circulation of patients with cancer, where it is used as a marker for cancer progression, but whether this form of CEA exerts any effects in the tumor microenvironment is unknown. Here, we present evidence that soluble CEA is sufficient to induce proangiogenic endothelial cell behaviors, including adhesion, spreading, proliferation, and migration in vitro and tumor microvascularization in vivo. CEA-induced activation of endothelial cells was dependent on integrin b-3 signals that activate the focal- adhesion kinase and c-Src kinase and their downstream MAP–ERK kinase/extracellular signal regulated kinase and phosphoinositide 3-kinase/Akt effector pathways. Notably, while interference with VEGF signaling had no effect on CEA-induced endothelial cell activation, downregulation with the CEA receptor in endothelial cells attenuated CEA-induced signaling and tumor angiogenesis. Corroborating these results clinically, we found -
Role of Liver ICAM‑1 in Metastasis (Review)
ONCOLOGY LETTERS 14: 3883-3892, 2017 Role of liver ICAM‑1 in metastasis (Review) AITOR BENEDICTO, IRENE ROMAYOR and BEATRIZ ARTETA Department of Cell Biology and Histology, School of Medicine and Nursing, University of The Basque Country, UPV/EHU, Leioa, E-48940 Vizcaya, Spain Received January 17, 2017; Accepted July 7, 2017 DOI: 10.3892/ol.2017.6700 Abstract. Intercellular adhesion molecule (ICAM)-1, is a frequently diagnosed cancer types and is the fourth leading transmembrane glycoprotein of the immunoglobulin (Ig)-like cause of cancer-related death (1). The spreading of cells from superfamily, consisting of five extracellular Ig‑like domains, a the primary lesion to a secondary organ and the subsequent transmembrane domain and a short cytoplasmic tail. ICAM-1 is development of distant metastases is a key factor that limits expressed in various cell types, including endothelial cells and patient survival rate. This remains one of the most complex leukocytes, and is involved in several physiological processes. issues faced in medicine (2). Furthermore, it has additionally been reported to be expressed The liver is the main target organ for metastatic CRC in various cancer cells, including melanoma, colorectal cancer cells and the second most commonly invaded organ, after and lymphoma. The majority of studies to date have focused the lymph nodes (3). In fact, 15-25% of CRC patients present on the expression of the ICAM‑1 on the surface of tumor cells, with synchronous hepatic metastases at the time of diagnosis, without research into ICAM‑1 expression at sites of metastasis. and a further 30% will later develop liver metastasis (4,5).