CSIRO PUBLISHING Invertebrate Systematics, 2021, 35, 332–349 https://doi.org/10.1071/IS20065 Phylogenomics and biogeography of leptonetid spiders (Araneae : Leptonetidae) Joel Ledford A,G, Shahan Derkarabetian B, Carles Ribera C, James Starrett D, Jason E. Bond D, Charles Griswold E and Marshal HedinF ADepartment of Plant Biology, University of California—Davis, Davis, CA 95616-5270, USA. BDepartment of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA. CDepartament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Universitat de Barcelona, Barcelona, Spain. DDepartment of Entomology and Nematology, University of California—Davis, Davis, CA 95616-5270, USA. EDepartment of Entomology, California Academy of Sciences, San Francisco, CA 94118, USA. FDepartment of Biology, San Diego State University, San Diego, CA 92182-4614, USA. GCorresponding author. Email:
[email protected] Abstract. Leptonetidae are rarely encountered spiders, usually associated with caves and mesic habitats, and are disjunctly distributed across the Holarctic. Data from ultraconserved elements (UCEs) were used in concatenated and coalescent-based analyses to estimate the phylogenetic history of the family. Our taxon sample included close outgroups, and 90% of described leptonetid genera, with denser sampling in North America and Mediterranean Europe. Two data matrices were assembled and analysed; the first ‘relaxed’ matrix includes the maximum number of loci and the second ‘strict’ matrix is limited to the same set of core orthologs but with flanking introns mostly removed. A molecular dating analysis incorporating fossil and geological calibration points was used to estimate divergence times, and dispersal–extinction–cladogenesis analysis (DEC) was used to infer ancestral distributions. Analysis of both data matrices using maximum likelihood and coalescent-based methods supports the monophyly of Archoleptonetinae and Leptonetinae.