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Evaluation of T-Cell and B-Cell Epitopes and Design of Multivalent Vaccines Against Htlv-1 Diseases
EVALUATION OF T-CELL AND B-CELL EPITOPES AND DESIGN OF MULTIVALENT VACCINES AGAINST HTLV-1 DISEASES DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Roshni Sundaram, M.S. * * * * * The Ohio State University 2003 Dissertation Committee: Approved by Professor Pravin T.P. Kaumaya, Adviser Professor Christopher M. Walker Adviser Professor Neil R. Baker Department of Microbiology Professor Marshall V. Williams ABSTRACT Human T-cell lymphotropic virus type I (HTLV-1) is a C type retrovirus that is the causative agent of an aggressive T-cell malignancy, adult T-cell leukemia/lymphoma (ATLL). The virus is also implicated in a number of inflammatory disorders, the most prominent among them being HTLV-1 associated myelopathy or tropical spastic paraparesis (HAM/TSP). HTLV-1, like many viruses that cause chronic infection, has adapted to persist in the face of an active immune response in infected individuals. The viral transactivator Tax is the primary target of the cellular immune response and humoral responses are mainly directed against the envelope protein. Vaccination against HTLV-1 is a feasible option as there is very little genetic and antigenic variability. Vaccination regimes against chronic viruses must be aimed at augmenting the immune response to a level that is sufficient to clear the virus. This requires that the vaccine delivers a potent stimulus to the immune system that closely resembles natural infection to activate both the humoral arm and the cellular arm. It is also clear that multicomponent vaccines may be more beneficial in terms of increasing the breadth of the immune response as well as being applicable in an outbred population. -
Redox-Mediated Regulation of the Tyrosine Kinase Zap70
Redox-mediated regulation of the tyrosine kinase Zap70 DISSERTATION zur Erlangung des akademischen Grades doctor rerum naturalium (Dr. rer. nat.) genehmigt durch die Fakultät für Naturwissenschaften der Otto-von-Guericke-Universität von M.Sc. Christoph Thurm geb. am 27.06.1988 in Borna Gutachter: apl. Prof. Dr. Luca Simeoni PD Dr. rer. nat. Marcus Lettau eingereicht am: 02.02.2018 verteidigt am: 06.06.2018 Eigenständigkeitserklärung I. Eigenständigkeitserklärung Christoph Thurm Halberstädter Straße 29 39112 Magdeburg Hiermit erkläre ich, dass ich die von mir eingereichte Dissertation zu dem Thema Redox-mediated regulation of the tyrosine kinase Zap70 selbständig verfasst, nicht schon als Dissertation verwendet habe und die benutzten Hilfsmittel und Quellen vollständig angegeben wurden. Weiterhin erkläre ich, dass ich weder diese noch eine andere Arbeit zur Erlangung des akademischen Grades doctor rerum naturalium (Dr. rer. nat.) an anderen Einrichtungen eingereicht habe. Magdeburg, den 02.02.2018 ____________________________________ M.Sc. Christoph Thurm II ACKNOWLEDGEMENTS II. Acknowledgements Firstly, I would like to express my sincere gratitude to my supervisor Prof. Dr. Luca Simeoni. His extraordinary support during my PhD thesis together with his motivation and knowledge enabled me to pursue my dream. I could not have imagined having a better mentor. Furthermore, I would like to thank Prof. Dr. Burkhart Schraven for giving me the opportunity to work in his institute. His support, ideas, and the lively discussions promoted me to develop as a scientist. Special thanks go also to the whole AG Simeoni/Schraven - Ines, Camilla, Matthias, and Andreas - for the help with experiments, the discussions, and the fun we had. This helped to sustain also the longest days. -
Monoclonal Antibody to Macrophages (Haematopoiesis Associated) - FITC
OriGene Technologies, Inc. OriGene Technologies GmbH 9620 Medical Center Drive, Ste 200 Schillerstr. 5 Rockville, MD 20850 32052 Herford UNITED STATES GERMANY Phone: +1-888-267-4436 Phone: +49-5221-34606-0 Fax: +1-301-340-8606 Fax: +49-5221-34606-11 [email protected] [email protected] BM4022F Monoclonal Antibody to Macrophages (Haematopoiesis associated) - FITC Alternate names: Macrophage marker Quantity: 0.2 mg Concentration: 0.4 mg/ml Background: 25F9 is associated with well-differentiated tissue macrophages both in normal and diseased tissues independently of the presence or absence of inflammation. The antigen is a 86kDa membrane protein, the epitope has not been further characterized. Host / Isotype: Mouse / IgG1 Recommended Isotype SM10F (for use in human samples) Controls: Clone: 25F9 Immunogen: Cultured human monocytes. Format: State: Liquid purified Ig fraction. Purification: Affinity chromatography. Buffer System: PBS buffer pH 7.2 with 0.09% sodium azide as preservative and 10 mg/ml BSA as stabilizer. Label: FITC Applications: Has been described to work in FACS. Antigen Distribution on Isolated cells and Tissue sections: Absent on freshly isolated monocytes and other blood cells; present on 40 - 50% of human monocytes after 6-7 day culture, also positive on some melanoma and carcinoma cell lines. Kupffer cells, histiocytes (skin), macrophages of the thymus, in the germinal centres of lymph nodes and spleen, in mamma carcinoma, melanoma, osteocarcinoma and gastric cancer; excema, sarcoidosis, BCG granuloma; synovial lining cells, tuberculoid leprosy: no expression in lepramatous leprosy. Other markers also used in the above studies include RM3/1, 27E10, G16/1, S36.48 and 8-5C2 in various combinations. -
Modeling Renal Cell Carcinoma in Mice: Bap1 and Pbrm1 Inactivation Drive Tumor Grade
Published OnlineFirst May 4, 2017; DOI: 10.1158/2159-8290.CD-17-0292 RESEARCH ARTICLE Modeling Renal Cell Carcinoma in Mice: Bap1 and Pbrm1 Inactivation Drive Tumor Grade Yi-Feng Gu1,2, Shannon Cohn1,2, Alana Christie2, Tiffani McKenzie2,3, Nicholas Wolff1,2, Quyen N. Do4, Ananth J. Madhuranthakam4, Ivan Pedrosa2,4, Tao Wang2,5, Anwesha Dey6, Meinrad Busslinger7, Xian-Jin Xie2,8, Robert E. Hammer9, Renée M. McKay1,2, Payal Kapur2,3, and James Brugarolas1,2 Downloaded from cancerdiscovery.aacrjournals.org on September 26, 2021. © 2017 American Association for Cancer Research. 17-CD-17-0292_p900-917.indd 900 7/20/17 10:05 AM Published OnlineFirst May 4, 2017; DOI: 10.1158/2159-8290.CD-17-0292 ABSTRACT Clear cell renal cell carcinoma (ccRCC) is characterized by BAP1 and PBRM1 muta- tions, which are associated with tumors of different grade and prognosis. However, whether BAP1 and PBRM1 loss causes ccRCC and determines tumor grade is unclear. We conditionally targeted Bap1 and Pbrm1 (with Vhl ) in the mouse using several Cre drivers. Sglt2 and Villin proximal convoluted tubule drivers failed to cause tumorigenesis, challenging the conventional notion of ccRCC origins. In contrast, targeting with PAX8, a transcription factor frequently overexpressed in ccRCC, led to ccRCC of different grades. Bap1 -defi cient tumors were of high grade and showed greater mTORC1 activation than Pbrm1 -defi cient tumors, which exhibited longer latency. Disrupting one allele of the mTORC1 negative regulator, Tsc1 , in Pbrm1 -defi cient kidneys triggered higher grade ccRCC. This study establishes Bap1 and Pbrm1 as lineage-specifi c drivers of ccRCC and histologic grade, implicates mTORC1 as a tumor grade rheostat, and suggests that ccRCCs arise from Bowman capsule cells. -
Non-Redundant Dual Functions of the ZAP70 Catalytic and Scaffolding
ical C lin as C e Isakov, J Clinic Case Reports 2012, 2:6 f R o l e DOI: 10.4172/2165-7920.1000e113 a p n o r r t u s o J Journal of Clinical Case Reports ISSN: 2165-7920 Editorial Open Access ZAP70-Related SCID: Non-Redundant Dual Functions of the ZAP70 Catalytic and Scaffolding Regions Noah Isakov* The Shraga Segal Department of Microbiology and Immunology, Faculty of Health Sciences and the Cancer Research Center, Ben Gurion University of the Negev, P.O.B. 653, Beer Sheva 84105, Israel Primary Severe Combined Immunodeficiency (SCID) is a form rearrangement of the actin cytoskeleton. These transient intracellular of heritable immunodeficiency, characterized by impaired adaptive signals permit the activation of selected transcription factors that immune responses [1]. It includes a group of genetic disorders promote the proliferation and differentiation of T cells. originated by defects in one of several different genes that are critical Analysis of the phosphorylation sites of ZAP-70 and their impact for T lymphocyte production and/or function and involve defects in B on the function of the molecule demonstrated that phosphorylation lymphocytes as a primary or secondary cause [2]. of Tyr319, Tyr492 and Tyr493 serves to regulate the ZAP70 catalytic The most common type of SCID is linked to the X chromosome activity [23-25]. However, in vivo activation of T cells results in ZAP70 (X-SCID), and therefore affects only males [3,4]. The X-SCID males phosphorylation on additional tyrosine residues [26,27] which may possess mutations in the interleukin-2 (IL-2) receptor gamma chain also function as putative docking sites for SH2-containing proteins. -
C-MET) Prolongs the Survival of Chronic Lymphocytic Leukemic Cells Through STAT3 Phosphorylation: a Potential Role of Mesenchymal Cells in the Disease
SUPPLEMENTARY APPENDIX An interaction between hepatocyte growth factor and its receptor (c-MET) prolongs the survival of chronic lymphocytic leukemic cells through STAT3 phosphorylation: a potential role of mesenchymal cells in the disease Paolo Giannoni,1 Silvia Scaglione,2 Rodolfo Quarto,1,3 Roberto Narcisi,3 Manuela Parodi,1 Enrico Balleari,4 Federica Barbieri,5 Alessandra Pattarozzi,5 Tullio Florio,5 Silvano Ferrini,6 †Giorgio Corte,7 and Daniela de Totero7 1Stem Cell Laboratory, Advanced Biotechnology Center, 16132, Genova; 2Dept. of Communication, Computer and System Sciences (D.I.S.T.), University of Genova, 16132, Genova; 3Dept. of Experimental Medicine (Di.Me.S.), University of Genova, Genova; 4Hematological Dept., San Martino Hospital, 16132, Genova; 5Pharmacology Laboratory, Dept. of Oncology, Biology and Genetics (D.O.Bi.G.), University of Genova, 16132, Genova; 6Immunological Therapies Laboratory and 7Gene Transfer Laboratory, National Institute for Cancer Research, 16132, Genova, Italy Citation: Giannoni P, Scaglione S, Quarto R, Narcisi R, Parodi M, Balleari E, Barbieri F, Pattarozzi A, Florio T, Ferrini S, Corte G, and de Totero D. An interaction between hepatocyte growth factor and its receptor (c-MET) prolongs the survival of chronic lymphocytic leukemic cells through STAT3 phosphorylation: a potential role of mesenchymal cells in the disease. Haematologica 2011;96(7):1015- 1023. doi:10.3324/haematol.2010.029736 Online Supplementary Design and Methods ac.uk/microarray-as/ae/) and analyzed in silico with Bioconductor (open source Version 1.2.0; http://www.bioconductor.org/docs/faq/) Immunofluorescence analysis of cell surface antigen for background subtraction and normalization (series acces- expression on chronic lymphocytic leukemia cells sion numbers detailed in Online Supplementary Table S2). -
Difference Between Antigen and Immunogen What Is an Antigen?
Difference Between Antigen and Immunogen www.differencebetween.com Key Difference - Antigen vs Immunogen Immunology is a branch of medicine and biology and is concerned about all aspects of the immune system in organisms. This is a much studied as it is vital to identify and assess the manner in which an organism protects itself against a foreign invasion. An immunological response is initiated upon the entry of a foreign entity which results in a cascade of reactions downstream to degrade or eliminate the foreign entity. An antigen is a foreign body or a molecule, which has the ability to bind to the antibody produced by the host in response to the recognition of the antigen. An immunogen is also a foreign molecule which can elicit an immune response by triggering the host immune system. The key difference between the antigen and the immunogen is their ability and the inability to generate an immune response;an immunogen is necessarily an antigen, but an antigen may not necessarily be an immunogen. What is an Antigen? Antigens are small molecular recognition sites present in the cellular surface of many bacteria, fungi, viruses, dust particles and other cellular and noncellular particles. These small molecules referred to as antigens,and they can be recognized by the host immune system. Antigens are mainly composed of proteins, amino acids, lipids, glycolipids, glycoproteins or nucleic acid markers. These molecules possess the ability to bind to the antibodies (immunoglobulins produced by B cells) produced by the host as an immune response. Antigens are also capable of triggering the host immune system to initiate an immune mechanism. -
Kaderschmiede
2 |12 Kaderschmiede FWF START/Wittgenstein 2012: Exzellenz9 » TRP: Wider besseres Wissen » Frau in der Wissenschaft: Verena Jantsch- Plunger » Interview: Helmut Denk » Persönliche Paradigmen: Gerhard Herndl INHALT 20 TRP: WIDer BESSERES WISSEN 30 FraU IN Der WISSENSCHAFT: VERENA JANTSCH- PLUNGER KaDER- SCHMIEDE 6 FWF 12 STAWI 2012: EXZELLENZ9 KONTEXT EDITORIAL 27 ERC-Broschüre: Excellent Prospects 4 PROJEKTVORSTELLUNGEN 28–29 Statement of Principles for Scientific 5 BRIEF DES PRÄSIDENTEN Merit Review 35 THEMA INTERVIEW: 6–11 Kaderschmiede FWF PANOPTIKUM HELMUT DENK 30–34 Frau in der Wissenschaft FOKUS Verena Jantsch-Plunger 12–15 STAWI 2012: Exzellenz9 35–39 Interview 16–18 Kursbestätigung Helmut Denk 19 Das letzte NFN 40–41 International ausgezeichnet 20–21 Wider besseres Wissen Meinrad Busslinger 22–23 FWF-Infoveranstaltungen: 42–45 Persönliche Paradigmen Auf ein Neues! Friedrich Stadler im Gespräch 24 FWF-E-Book-Library mit Gerhard Herndl 25 Aufwertung der studentischen Mitarbeit 46–47 Unterwegs 26 The Journal of Universal Rejection Around the World EDITORIAL 42 PERSÖNLICHE PARADIGMEN: GERHARD HERNDL TRP: WIDer BESSERES WISSEN ms mas stb Der Forschungs-Kader » Bei der Verwendung des Wortes „Kader“ muss man als Autor vorsichtig sein. Zu ambivalent ist der Begriff besetzt, das Spek- trum reicht von negativ besetzten militärischen oder politischen Zusammenhängen bis hin zu positiv assoziierten Bereichen wie Sport sowie „positiv besetzten“ Eliten. Die Spitzenforschung mit ihren hoch qua- lifizierten Wissenschafterinnen und Wissenschaftern ist so eine Elite. Eine Kaderschmiede zu sein, ist also in ausgewählten Bereichen eine Auszeich- nung. So versteht es auch der FWF, wenn er im Zusammenhang mit seiner „Qualitätsselektion“ im Bereich wissenschaftlicher Projekte und ihrer da- hinter stehenden Personen als Kaderschmiede für Spitzenforschung be- 46 zeichnet wird. -
K-RAS Gtpase- and B-RAF Kinase–Mediated T-Cell PNAS PLUS Tolerance Defects in Rheumatoid Arthritis
K-RAS GTPase- and B-RAF kinase–mediated T-cell PNAS PLUS tolerance defects in rheumatoid arthritis Karnail Singha,1, Pratima Deshpandeb,1, Guangjin Lib, Mingcan Yub, Sergey Pryshchepa, Mary Cavanaghb, Cornelia M. Weyandb, and Jörg J. Goronzyb,2 aLowance Center for Human Immunology and Rheumatology, Department of Medicine, Emory University School of Medicine, Atlanta, GA 30322; and bDepartment of Medicine, Stanford University School of Medicine and Palo Alto Department of Veterans Affairs Health Care System, Palo Alto, CA 94304 Edited by Dennis A. Carson, University of California at San Diego, La Jolla, CA, and approved April 18, 2012 (received for review November 3, 2011) Autoantibodies to common autoantigens and neoantigens, such the signaling cascade after T-cell receptor (TCR) stimulation. as IgG Fc and citrullinated peptides, are immunological hallmarks Based on the substitution conferring increased phosphatase ac- of rheumatoid arthritis (RA). We examined whether a failure in tivity, it was originally considered a gain of function (12). Recent maintaining tolerance is mediated by defects in T-cell receptor findings, however, have shown that the variant is rapidly de- activation threshold settings. RA T cells responded to stimulation graded, causing T-cell hyperresponsiveness (13). The findings with significantly higher ERK phosphorylation (P < 0.001). Gene of disease-associated HLA-DRB1 alleles and PTPN22 poly- expression arrays of ERK pathway members suggested a higher morphisms indicate that T-cell recognition events and TCR expression of KRAS and BRAF, which was confirmed by quantita- threshold calibration are central to RA pathogenesis (13, 14). tive PCR (P = 0.003), Western blot, and flow cytometry (P < 0.01). -
(12) Patent Application Publication (10) Pub. No.: US 2003/0082511 A1 Brown Et Al
US 20030082511A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2003/0082511 A1 Brown et al. (43) Pub. Date: May 1, 2003 (54) IDENTIFICATION OF MODULATORY Publication Classification MOLECULES USING INDUCIBLE PROMOTERS (51) Int. Cl." ............................... C12O 1/00; C12O 1/68 (52) U.S. Cl. ..................................................... 435/4; 435/6 (76) Inventors: Steven J. Brown, San Diego, CA (US); Damien J. Dunnington, San Diego, CA (US); Imran Clark, San Diego, CA (57) ABSTRACT (US) Correspondence Address: Methods for identifying an ion channel modulator, a target David B. Waller & Associates membrane receptor modulator molecule, and other modula 5677 Oberlin Drive tory molecules are disclosed, as well as cells and vectors for Suit 214 use in those methods. A polynucleotide encoding target is San Diego, CA 92121 (US) provided in a cell under control of an inducible promoter, and candidate modulatory molecules are contacted with the (21) Appl. No.: 09/965,201 cell after induction of the promoter to ascertain whether a change in a measurable physiological parameter occurs as a (22) Filed: Sep. 25, 2001 result of the candidate modulatory molecule. Patent Application Publication May 1, 2003 Sheet 1 of 8 US 2003/0082511 A1 KCNC1 cDNA F.G. 1 Patent Application Publication May 1, 2003 Sheet 2 of 8 US 2003/0082511 A1 49 - -9 G C EH H EH N t R M h so as se W M M MP N FIG.2 Patent Application Publication May 1, 2003 Sheet 3 of 8 US 2003/0082511 A1 FG. 3 Patent Application Publication May 1, 2003 Sheet 4 of 8 US 2003/0082511 A1 KCNC1 ITREXCHO KC 150 mM KC 2000000 so 100 mM induced Uninduced Steady state O 100 200 300 400 500 600 700 Time (seconds) FIG. -
Protein Tyrosine Kinases: Their Roles and Their Targeting in Leukemia
cancers Review Protein Tyrosine Kinases: Their Roles and Their Targeting in Leukemia Kalpana K. Bhanumathy 1,*, Amrutha Balagopal 1, Frederick S. Vizeacoumar 2 , Franco J. Vizeacoumar 1,3, Andrew Freywald 2 and Vincenzo Giambra 4,* 1 Division of Oncology, College of Medicine, University of Saskatchewan, Saskatoon, SK S7N 5E5, Canada; [email protected] (A.B.); [email protected] (F.J.V.) 2 Department of Pathology and Laboratory Medicine, College of Medicine, University of Saskatchewan, Saskatoon, SK S7N 5E5, Canada; [email protected] (F.S.V.); [email protected] (A.F.) 3 Cancer Research Department, Saskatchewan Cancer Agency, 107 Wiggins Road, Saskatoon, SK S7N 5E5, Canada 4 Institute for Stem Cell Biology, Regenerative Medicine and Innovative Therapies (ISBReMIT), Fondazione IRCCS Casa Sollievo della Sofferenza, 71013 San Giovanni Rotondo, FG, Italy * Correspondence: [email protected] (K.K.B.); [email protected] (V.G.); Tel.: +1-(306)-716-7456 (K.K.B.); +39-0882-416574 (V.G.) Simple Summary: Protein phosphorylation is a key regulatory mechanism that controls a wide variety of cellular responses. This process is catalysed by the members of the protein kinase su- perfamily that are classified into two main families based on their ability to phosphorylate either tyrosine or serine and threonine residues in their substrates. Massive research efforts have been invested in dissecting the functions of tyrosine kinases, revealing their importance in the initiation and progression of human malignancies. Based on these investigations, numerous tyrosine kinase inhibitors have been included in clinical protocols and proved to be effective in targeted therapies for various haematological malignancies. -
Vaccine Immunology Claire-Anne Siegrist
2 Vaccine Immunology Claire-Anne Siegrist To generate vaccine-mediated protection is a complex chal- non–antigen-specifc responses possibly leading to allergy, lenge. Currently available vaccines have largely been devel- autoimmunity, or even premature death—are being raised. oped empirically, with little or no understanding of how they Certain “off-targets effects” of vaccines have also been recog- activate the immune system. Their early protective effcacy is nized and call for studies to quantify their impact and identify primarily conferred by the induction of antigen-specifc anti- the mechanisms at play. The objective of this chapter is to bodies (Box 2.1). However, there is more to antibody- extract from the complex and rapidly evolving feld of immu- mediated protection than the peak of vaccine-induced nology the main concepts that are useful to better address antibody titers. The quality of such antibodies (e.g., their these important questions. avidity, specifcity, or neutralizing capacity) has been identi- fed as a determining factor in effcacy. Long-term protection HOW DO VACCINES MEDIATE PROTECTION? requires the persistence of vaccine antibodies above protective thresholds and/or the maintenance of immune memory cells Vaccines protect by inducing effector mechanisms (cells or capable of rapid and effective reactivation with subsequent molecules) capable of rapidly controlling replicating patho- microbial exposure. The determinants of immune memory gens or inactivating their toxic components. Vaccine-induced induction, as well as the relative contribution of persisting immune effectors (Table 2.1) are essentially antibodies— antibodies and of immune memory to protection against spe- produced by B lymphocytes—capable of binding specifcally cifc diseases, are essential parameters of long-term vaccine to a toxin or a pathogen.2 Other potential effectors are cyto- effcacy.