PDF Output of CLIC (Clustering by Inferred Co-Expression)

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PDF Output of CLIC (clustering by inferred co-expression) Dataset: Num of genes in input gene set: 46 Total number of genes: 16493 CLIC PDF output has three sections: 1) Overview of Co-Expression Modules (CEMs) Heatmap shows pairwise correlations between all genes in the input query gene set. Red lines shows the partition of input genes into CEMs, ordered by CEM strength. Each row shows one gene, and the brightness of squares indicates its correlations with other genes. Gene symbols are shown at left side and on the top of the heatmap. 2) Details of each CEM and its expansion CEM+ Top panel shows the posterior selection probability (dataset weights) for top GEO series datasets. Bottom panel shows the CEM genes (blue rows) as well as expanded CEM+ genes (green rows). Each column is one GEO series dataset, sorted by their posterior probability of being selected. The brightness of squares indicates the gene's correlations with CEM genes in the corresponding dataset. CEM+ includes genes that co-express with CEM genes in high-weight datasets, measured by LLR score. 3) Details of each GEO series dataset and its expression profile: Top panel shows the detailed information (e.g. title, summary) for the GEO series dataset. Bottom panel shows the background distribution and the expression profile for CEM genes in this dataset. Overview of Co-Expression Modules (CEMs) with Dataset Weighting Scale of average Pearson correlations Num of Genes in Query Geneset: 46. Num of CEMs: 0. 0.0 0.2 0.4 0.6 0.8 1.0 Mfng Pcsk7 Large St6galnac2 St6galnac4 B4galnt1 St3gal1 St8sia4 St6galnac5 St8sia1 St8sia2 Lfng Qsox1 St6galnac3 St6gal1 Acer2 St6galnac1 B4galnt2 Abo St8sia5 St3gal2 St3gal3 St6galnac6 Slc39a13 Csgalnact2 St3gal4 Sgms1 Galnt2 Steap2 Sgms2 Bet1l Entpd4 St6gal2 Fut2 Man1c1 Acer3 St8sia6 St8sia3 St3gal6 Chst12 St3gal5 B3gnt1 Csgalnact1 A4galt Rfng Rer1 Mfng Pcsk7 Large St6galnac2 St6galnac4 B4galnt1 St3gal1 St8sia4 St6galnac5 St8sia1 St8sia2 Lfng Qsox1 St6galnac3 St6gal1 Acer2 St6galnac1 B4galnt2 Abo St8sia5 St3gal2 St3gal3 St6galnac6 Singletons Slc39a13 Csgalnact2 St3gal4 Sgms1 Galnt2 Steap2 Sgms2 Bet1l Entpd4 St6gal2 Fut2 Man1c1 Acer3 St8sia6 St8sia3 St3gal6 Chst12 St3gal5 B3gnt1 Csgalnact1 A4galt Rfng Rer1.

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Implications in Parkinson's Disease
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