Interplay Between SNX27 and DAG Metabolism in the Control of Trafficking and Signaling at the IS
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Sorting Nexins in Protein Homeostasis Sara E. Hanley1,And Katrina F
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 6 November 2020 doi:10.20944/preprints202011.0241.v1 Sorting nexins in protein homeostasis Sara E. Hanley1,and Katrina F. Cooper2* 1Department of Molecular Biology, Graduate School of Biomedical Sciences, Rowan University, Stratford, NJ, 08084, USA 1 [email protected] 2 [email protected] * [email protected] Tel: +1 (856)-566-2887 1Department of Molecular Biology, Graduate School of Biomedical Sciences, Rowan University, Stratford, NJ, 08084, USA Abstract: Sorting nexins (SNXs) are a highly conserved membrane-associated protein family that plays a role in regulating protein homeostasis. This family of proteins is unified by their characteristic phox (PX) phosphoinositides binding domain. Along with binding to membranes, this family of SNXs also comprises a diverse array of protein-protein interaction motifs that are required for cellular sorting and protein trafficking. SNXs play a role in maintaining the integrity of the proteome which is essential for regulating multiple fundamental processes such as cell cycle progression, transcription, metabolism, and stress response. To tightly regulate these processes proteins must be expressed and degraded in the correct location and at the correct time. The cell employs several proteolysis mechanisms to ensure that proteins are selectively degraded at the appropriate spatiotemporal conditions. SNXs play a role in ubiquitin-mediated protein homeostasis at multiple levels including cargo localization, recycling, degradation, and function. In this review, we will discuss the role of SNXs in three different protein homeostasis systems: endocytosis lysosomal, the ubiquitin-proteasomal, and the autophagy-lysosomal system. The highly conserved nature of this protein family by beginning with the early research on SNXs and protein trafficking in yeast and lead into their important roles in mammalian systems. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Sorting Nexin 27 Regulates the Lysosomal Degradation of Aquaporin-2 Protein in the Kidney Collecting Duct
cells Article Sorting Nexin 27 Regulates the Lysosomal Degradation of Aquaporin-2 Protein in the Kidney Collecting Duct Hyo-Jung Choi 1,2, Hyo-Ju Jang 1,3, Euijung Park 1,3, Stine Julie Tingskov 4, Rikke Nørregaard 4, Hyun Jun Jung 5 and Tae-Hwan Kwon 1,3,* 1 Department of Biochemistry and Cell Biology, School of Medicine, Kyungpook National University, Taegu 41944, Korea; [email protected] (H.-J.C.); [email protected] (H.-J.J.); [email protected] (E.P.) 2 New Drug Development Center, Daegu-Gyeongbuk Medical Innovation Foundation, Taegu 41061, Korea 3 BK21 Plus KNU Biomedical Convergence Program, Department of Biomedical Science, School of Medicine, Kyungpook National University, Taegu 41944, Korea 4 Department of Clinical Medicine, Aarhus University, Aarhus 8200, Denmark; [email protected] (S.J.T.); [email protected] (R.N.) 5 Division of Nephrology, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; [email protected] * Correspondence: [email protected]; Tel.: +82-53-420-4825; Fax: +82-53-422-1466 Received: 30 March 2020; Accepted: 11 May 2020; Published: 13 May 2020 Abstract: Sorting nexin 27 (SNX27), a PDZ (Postsynaptic density-95/Discs large/Zonula occludens 1) domain-containing protein, cooperates with a retromer complex, which regulates intracellular trafficking and the abundance of membrane proteins. Since the carboxyl terminus of aquaporin-2 (AQP2c) has a class I PDZ-interacting motif (X-T/S-X-F), the role of SNX27 in the regulation of AQP2 was studied. Co-immunoprecipitation assay of the rat kidney demonstrated an interaction of SNX27 with AQP2. -
Sorting Nexin-27 Regulates AMPA Receptor Trafficking Through The
RESEARCH ARTICLE Sorting nexin-27 regulates AMPA receptor trafficking through the synaptic adhesion protein LRFN2 Kirsty J McMillan1†*, Paul J Banks2†, Francesca LN Hellel1, Ruth E Carmichael1, Thomas Clairfeuille3, Ashley J Evans1, Kate J Heesom4, Philip Lewis4, Brett M Collins3, Zafar I Bashir2, Jeremy M Henley1, Kevin A Wilkinson1*, Peter J Cullen1* 1School of Biochemistry, University of Bristol, Bristol, United Kingdom; 2School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, United Kingdom; 3Institute for Molecular Bioscience, The University of Queensland, Queensland, Australia; 4Proteomics facility, School of Biochemistry, University of Bristol, Bristol, United Kingdom Abstract The endosome-associated cargo adaptor sorting nexin-27 (SNX27) is linked to various neuropathologies through sorting of integral proteins to the synaptic surface, most notably AMPA receptors. To provide a broader view of SNX27-associated pathologies, we performed proteomics in rat primary neurons to identify SNX27-dependent cargoes, and identified proteins linked to excitotoxicity, epilepsy, intellectual disabilities, and working memory deficits. Focusing on the *For correspondence: synaptic adhesion molecule LRFN2, we established that SNX27 binds to LRFN2 and regulates its [email protected] endosomal sorting. Furthermore, LRFN2 associates with AMPA receptors and knockdown of (KJMM); LRFN2 results in decreased surface AMPA receptor expression, reduced synaptic activity, and [email protected] attenuated hippocampal long-term potentiation. Overall, our study provides an additional (KAW); mechanism by which SNX27 can control AMPA receptor-mediated synaptic transmission and [email protected] (PJC) plasticity indirectly through the sorting of LRFN2 and offers molecular insight into the perturbed †These authors contributed function of SNX27 and LRFN2 in a range of neurological conditions. -
Downregulation of Glial Genes Involved in Synaptic Function
RESEARCH ARTICLE Downregulation of glial genes involved in synaptic function mitigates Huntington’s disease pathogenesis Tarik Seref Onur1,2,3†, Andrew Laitman2,4,5†, He Zhao2, Ryan Keyho2, Hyemin Kim2, Jennifer Wang2, Megan Mair1,2,3, Huilan Wang6, Lifang Li1,2, Alma Perez2, Maria de Haro1,2, Ying-Wooi Wan2, Genevera Allen2,7, Boxun Lu6, Ismael Al-Ramahi1,2, Zhandong Liu2,4,5, Juan Botas1,2,3,4* 1Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, United States; 2Jan and Dan Duncan Neurological Research Institute at Texas Children’s Hospital, Houston, United States; 3Genetics & Genomics Graduate Program, Baylor College of Medicine, Houston, United States; 4Quantitative & Computational Biosciences, Baylor College of Medicine, Houston, United States; 5Department of Pediatrics, Baylor College of Medicine, Houston, United States; 6State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Fudan University, Shanghai, China; 7Departments of Electrical & Computer Engineering, Statistics and Computer Science, Rice University, Houston, United States Abstract Most research on neurodegenerative diseases has focused on neurons, yet glia help form and maintain the synapses whose loss is so prominent in these conditions. To investigate the contributions of glia to Huntington’s disease (HD), we profiled the gene expression alterations of *For correspondence: Drosophila expressing human mutant Huntingtin (mHTT) in either glia or neurons and compared [email protected] these changes to what is observed in HD human and HD mice striata. A large portion of conserved genes are concordantly dysregulated across the three species; we tested these genes in a high- †These authors contributed throughput behavioral assay and found that downregulation of genes involved in synapse assembly equally to this work mitigated pathogenesis and behavioral deficits. -
And Diagnostic Implications During Chronic Inflammation
Impaired SNX9 Expression in Immune Cells during Chronic Inflammation: Prognostic and Diagnostic Implications This information is current as Eliran Ish-Shalom, Yaron Meirow, Moshe Sade-Feldman, of September 27, 2021. Julia Kanterman, Lynn Wang, Olga Mizrahi, Yair Klieger and Michal Baniyash J Immunol 2016; 196:156-167; Prepublished online 25 November 2015; doi: 10.4049/jimmunol.1402877 Downloaded from http://www.jimmunol.org/content/196/1/156 Supplementary http://www.jimmunol.org/content/suppl/2015/11/25/jimmunol.140287 Material 7.DCSupplemental http://www.jimmunol.org/ References This article cites 50 articles, 23 of which you can access for free at: http://www.jimmunol.org/content/196/1/156.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 27, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2015 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Impaired SNX9 Expression in Immune Cells during Chronic Inflammation: Prognostic and Diagnostic Implications Eliran Ish-Shalom,*,† Yaron Meirow,*,1 Moshe Sade-Feldman,*,1 Julia Kanterman,* Lynn Wang,* Olga Mizrahi,† Yair Klieger,*,† and Michal Baniyash* Chronic inflammation is associated with immunosuppression and downregulated expression of the TCR CD247. -
A Targeted Rnai Screen Identifies Endocytic Trafficking Factors That
Diabetes Volume 67, March 2018 385 A Targeted RNAi Screen Identifies Endocytic Trafficking Factors That Control GLP-1 Receptor Signaling in Pancreatic b-Cells Teresa Buenaventura,1 Nisha Kanda,1 Phoebe C. Douzenis,1 Ben Jones,2 Stephen R. Bloom,2 Pauline Chabosseau,1 Ivan R. Corrêa Jr.,3 Domenico Bosco,4 Lorenzo Piemonti,5,6 Piero Marchetti,7 Paul R. Johnson,8 A.M. James Shapiro,9 Guy A. Rutter,1 and Alejandra Tomas1 Diabetes 2018;67:385–399 | https://doi.org/10.2337/db17-0639 The glucagon-like peptide 1 (GLP-1) receptor (GLP-1R) is a key binding, GLP-1Rs signal through stimulatory G (Gs) pro- target for type 2 diabetes (T2D) treatment. Because endocytic teins to raise intracellular cAMP levels and modulate insulin trafficking of agonist-bound receptors is one of the most secretion from pancreatic b-cells. important routes for regulation of receptor signaling, a better As with other G protein–coupled receptors (GPCRs), SIGNAL TRANSDUCTION understanding of this process may facilitate the develop- GLP-1R signaling is tightly regulated through endocytic ment of new T2D therapeutic strategies. Here, we screened trafficking (2). Activated GLP-1Rs are rapidly internalized – 29 proteins with known functions in G protein coupled recep- and recycled to the plasma membrane or distributed through- fi tor traf cking for their role in GLP-1R potentiation of insulin out endocytic compartments (3). Despite the pivotal role b fi secretion in pancreatic -cells. We identify ve (clathrin, of trafficking in GPCR signaling, neither the molecular dynamin1, AP2, sorting nexins [SNX] SNX27, and SNX1) details nor the key factors responsible for GLP-1R endo- that increase and four (huntingtin-interacting protein 1 cytosis and postendocytic sorting have been thoroughly [HIP1], HIP14, GASP-1, and Nedd4) that decrease insulin investigated. -
Supplementary Information – Postema Et Al., the Genetics of Situs Inversus Totalis Without Primary Ciliary Dyskinesia
1 Supplementary information – Postema et al., The genetics of situs inversus totalis without primary ciliary dyskinesia Table of Contents: Supplementary Methods 2 Supplementary Results 5 Supplementary References 6 Supplementary Tables and Figures Table S1. Subject characteristics 9 Table S2. Inbreeding coefficients per subject 10 Figure S1. Multidimensional scaling to capture overall genomic diversity 11 among the 30 study samples Table S3. Significantly enriched gene-sets under a recessive mutation model 12 Table S4. Broader list of candidate genes, and the sources that led to their 13 inclusion Table S5. Potential recessive and X-linked mutations in the unsolved cases 15 Table S6. Potential mutations in the unsolved cases, dominant model 22 2 1.0 Supplementary Methods 1.1 Participants Fifteen people with radiologically documented SIT, including nine without PCD and six with Kartagener syndrome, and 15 healthy controls matched for age, sex, education and handedness, were recruited from Ghent University Hospital and Middelheim Hospital Antwerp. Details about the recruitment and selection procedure have been described elsewhere (1). Briefly, among the 15 people with radiologically documented SIT, those who had symptoms reminiscent of PCD, or who were formally diagnosed with PCD according to their medical record, were categorized as having Kartagener syndrome. Those who had no reported symptoms or formal diagnosis of PCD were assigned to the non-PCD SIT group. Handedness was assessed using the Edinburgh Handedness Inventory (EHI) (2). Tables 1 and S1 give overviews of the participants and their characteristics. Note that one non-PCD SIT subject reported being forced to switch from left- to right-handedness in childhood, in which case five out of nine of the non-PCD SIT cases are naturally left-handed (Table 1, Table S1). -
Sorting Nexin 9 in Clathrin-Mediated Endocytosis
UMEÅ UNIVERSITY MEDICAL DISSERTATIONS New Series No. 875; ISSN 0346-6612; ISBN 91-7305-599-9 Department of Medical Biochemistry and Biophysics Umeå University, Sweden Editor: The Dean of the Faculty of Medicine Sorting Nexin 9 in Clathrin-mediated Endocytosis Richard Lundmark Department of Medical Biochemistry and Biophysics Umeå University, Sweden Umeå 2004 © Richard Lundmark ISBN 91-7305-599-9 Printed in Sweden at Solfjädern Offset AB Umeå 2004 Tillägnad min älskade familj Samuel, Elias och Ida TABLE OF CONTENTS ABBREVIATIONS ...................................................................................................................2 ABSTRACT...............................................................................................................................3 PUBLICATION LIST ...............................................................................................................4 OVERVIEW ..............................................................................................................................5 1. INTRODUCTION .................................................................................................................5 2. ADAPTOR PROTEIN COMPLEXES..................................................................................6 3. CLATHRIN ...........................................................................................................................6 4. ENDOCYTOSIS....................................................................................................................7 -
Morphology, Behavior, and the Sonic Hedgehog Pathway in Mouse Models of Down Syndrome
MORPHOLOGY, BEHAVIOR, AND THE SONIC HEDGEHOG PATHWAY IN MOUSE MODELS OF DOWN SYNDROME by Tara Dutka A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland July, 2014 © 2014 Tara Dutka All Rights Reserved Abstract Down Syndrome (DS) is caused by a triplication of human chromosome 21 (Hsa21). Ts65Dn, a mouse model of DS, contains a freely segregating extra chromosome consisting of the distal portion of mouse chromosome 16 (Mmu16), a region orthologous to part of Hsa21, and a non-Hsa21 orthologous region of mouse chromosome 17. All individuals with DS display some level of craniofacial dysmorphology, brain structural and functional changes, and cognitive impairment. Ts65Dn recapitulates these features of DS and aspects of each of these traits have been linked in Ts65Dn to a reduced response to Sonic Hedgehog (SHH) in trisomic cells. Dp(16)1Yey is a new mouse model of DS which has a direct duplication of the entire Hsa21 orthologous region of Mmu16. Dp(16)1Yey’s creators found similar behavioral deficits to those seen in Ts65Dn. We performed a quantitative investigation of the skull and brain of Dp(16)1Yey as compared to Ts65Dn and found that DS-like changes to brain and craniofacial morphology were similar in both models. Our results validate examination of the genetic basis for these phenotypes in Dp(16)1Yey mice and the genetic links for these phenotypes previously found in Ts65Dn , i.e., reduced response to SHH. Further, we hypothesized that if all trisomic cells show a reduced response to SHH, then up-regulation of the SHH pathway might ameliorate multiple phenotypes. -
Crystal Structure of the PX Domain of SNX27
ISSN 0006-2979, Biochemistry (Moscow), 2019, Vol. 84, No. 2, pp. 147-152. © Pleiades Publishing, Ltd., 2019. Published in Russian in Biokhimiya, 2019, Vol. 84, No. 2, pp. 223-228. Originally published in Biochemistry (Moscow) On-Line Papers in Press, as Manuscript BM18-189, November 19, 2018. Crystal Structure of the PX Domain of SNX27 Y. Li1,a, S. Liao1,b, F. Li1,c, and Z. Zhu1,d* 1Hefei National Laboratory for Physical Sciences at the Microscale and School of Life Sciences, University of Science and Technology of China, 230027 Hefei, China ae-mail: [email protected] be-mail: [email protected] ce-mail: [email protected] de-mail: [email protected] Received July 5, 2018 Revised September 29, 2018 Accepted September 29, 2018 Abstract—SNX27 is a component of the retromer complex essential for the recycling of transmembrane receptors. SNX27 contains the N-terminal Phox (PX) domain that binds inositol 1,3-diphosphate (Ins(1,3)P2) and is important for the SNX27 localization. Here, we determined the crystal structure of human SNX27 PX domain by X-ray crystallography. We found that the sulfate ion is located in the positively charged lipid-binding pocket of the PX domain, which mimics the phospholipid recognition. In addition, we modelled the SNX27-PX–Ins(1,3)P2 complex to better understand the mechanism of Ins(1,3)P2 recognition by the PX domain of SNX27. DOI: 10.1134/S0006297919020056 Keywords: SNX27, lipid binding, PX domain, crystal structure Endocytosis is an energy consuming process that phate (Ins(1,3)P2) [8, 9]. -
G Protein-Regulated Endocytic Trafficking of Adenylyl Cyclase Type 9
RESEARCH ARTICLE G protein-regulated endocytic trafficking of adenylyl cyclase type 9 Andre´ M Lazar1, Roshanak Irannejad2, Tanya A Baldwin3, Aparna B Sundaram4, J Silvio Gutkind5, Asuka Inoue6, Carmen W Dessauer3, Mark Von Zastrow2,7* 1Program in Biochemistry and Cell Biology, University of California San Francisco, San Francisco, United States; 2Cardiovascular Research Institute and Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, United States; 3Department of Integrative Biology and Pharmacology, University of Texas Health Science Center, Houston, United States; 4Lung Biology Center, Department of Medicine, University of California San Francisco, San Francisco, United States; 5Department of Pharmacology and Moores Cancer Center, University of California San Diego, San Diego, United States; 6Graduate School of Pharmaceutical Sciences, Tohoku University, Aoba-ku, Sendai, Japan; 7Department of Psychiatry and Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, United States Abstract GPCRs are increasingly recognized to initiate signaling via heterotrimeric G proteins as they move through the endocytic network, but little is known about how relevant G protein effectors are localized. Here we report selective trafficking of adenylyl cyclase type 9 (AC9) from the plasma membrane to endosomes while adenylyl cyclase type 1 (AC1) remains in the plasma membrane, and stimulation of AC9 trafficking by ligand-induced activation of Gs-coupled GPCRs. AC9 transits a similar, dynamin-dependent early endocytic pathway as ligand-activated GPCRs. However, unlike GPCR traffic control which requires b-arrestin but not Gs, AC9 traffic control requires Gs but not b-arrestin. We also show that AC9, but not AC1, mediates cAMP production stimulated by endogenous receptor activation in endosomes.