DOCSLIB.ORG

Effects of the Combined Bioturbation and Phytoremediation on Cadmium and Atrazine Removal Trung Kien Hoang

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Effects of the Combined Bioturbation and Phytoremediation on Cadmium and Atrazine Removal Trung Kien Hoang Ecological engineering for the bioremediation of aquatic systems : effects of the combined bioturbation and phytoremediation on cadmium and atrazine removal Trung Kien Hoang To cite this version: Trung Kien Hoang. Ecological engineering for the bioremediation of aquatic systems : effects of the combined bioturbation and phytoremediation on cadmium and atrazine removal. Ecology, environ- ment. Université Paul Sabatier - Toulouse III, 2018. English. NNT : 2018TOU30348. tel-02417583 HAL Id: tel-02417583 https://tel.archives-ouvertes.fr/tel-02417583 Submitted on 18 Dec 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE En vue de l’obtention du DOCTORAT DE L’UNIVERSITÉ DE TOULOUSE Délivré par l'Université Toulouse 3 - Paul Sabatier Présentée et soutenue par Trung Kien HOANG Le 16 novembre 2018 Ingénierie écologique pour la biorémédiation des systèmes aquatiques: effets du couplage de la bioturbation avec la phytoremediation sur le cadmium et l'atrazine Ecole doctorale : SDU2E - Sciences de l'Univers, de l'Environnement et de l'Espace Spécialité : Ecologie fonctionnelle Unité de recherche : ECOLAB - Laboratoire d'Ecologie Fonctionnelle et Environnement Thèse dirigée par Magali GERINO et Thi Thuy DUONG Jury M. Pierre ANSCHUTZ, Rapporteur M. Florian MERMILLOD-BLONDIN, Rapporteur M. Fabrice MARTIN-LAURENT, Examinateur M. Francois LAURENT, Examinateur M. Didier ORANGE, Examinateur M. Franck GILBERT, Examinateur Mme MagaliM. Arnaud GERINO, ELGER, Directeur Invité de thèse HOANG T.K. 2018 “It always seems impossible until it’s done” – Nelson Mandela 2 HOANG T.K. 2018 Acknowledgment Firstly, I would particularly like to thank my thesis supervisor, Prof. Magali GERINO, who offered me the opportunity to pursue this thesis and for all the confidence that she has given to me. Her immense knowledge, together with her patience, has been an irreplaceable source of guidance and support for me in carrying out , research and writing this thesis. Without her supervision, this project would simply not have happened. I would like to acknowledge the valuable input of Dr. Francois LAURENT and Dr. Anne PROBST, who contributed to the analyses method and were always willing to help to resolve the problematic issues. I would also like to acknowledge helpful suggestions and encouragement from Dr. Thi Thuy DUONG – thesis supervisor from Vietnam and Dr. Didier ORANGE – thesis advisor as well as thesis committee members: Dr. Franck GILBERT, Dr. Arnaud ELGER, and Dr. Nicolas MAZZELLA. I would like to thank my colleagues and dear friends: Mrs. Marie-Joe TAVELLA, Mrs. Sophie LORBER, Mr. Frederic JULIEN, Mr. SYLVAIN LAMOTHE, Mr. Didier LAMBRIGOT for their availability, introductory in technique, assistance and contribution to my analytical work and data collection as well at ENSAT, INRA2, and ECOLAB laboratories. I also wanted to show my gratitude the other members of the BIOREF team: Regine SAUR, Micky TACKX, Evelyne BUFFAN-DUBAU, Thibaut ROTA, Quentin PETITJEAN, and many other people who had contributed to the perfect atmosphere of this laboratory – one that was so welcoming. That I never failed to feel pleased and thankful for. Last but not the least; I would like to thank my family, my parent, my wife, and my daughter, who always beside me no matter where I am. Thank you for being ever so understanding and supportive! 3 HOANG T.K. 2018 RESUME FRANÇAIS Ce sujet de recherche vise mieux comprendre les processus de bio remédiation qui participent à la réduction des charges en polluants dans les écosystèmes aquatiques du type zones humides, en tant que question d’actualité en ingénierie écologique. L’efficacité des processus de phytoremédiation a été largement démontrée par des applications individuelles sur le sol et les sédiments. Cette thèse a pour objectif de démontrer la participation d’une population d’invertébrés dans l’efficacité de la réduction de polluants des sédiments aquatiques en combinant le processus de bioturbation avec la phytoremédiation. Les hypotheses de recherche ont été testée expérimentalement en conditions de laboratoire à l’aide d'une série de microcosmes reproduisant chacun une portion d’interface eau/ sédiments similaire aux conditions en zones humides. Dans nos expériences, la bioturbation est réalisée par une population d’oligochètes Tubificidae bien connue comme un ingénieur écologique. La phytoremédiation associée est effectuée par une plante aquatique Typha latifolia connue pour sa capacité à extraire les polluants organiques et inorganiques des sédiments par l'accumulation dans leur biomasse. L’influence de cette biodiversité sur les flux et bilan de masse de polluants modèles, a été démontré à l’aide de 2 expériences de laboratoire mettant en oeuvre des séries de microcosmes contaminées avec du Cadmium en tant que métal trace avec une concentration initiale de 20 µg.L-1, dans l’eau surnageante, et de l’atrazine marquée avec une concentration de 5 µg.g-1 de sédiment frais en tant que micropolluant organique persistant et herbicide. Les résultats de ces expériences démontrent que le bio-transport créé par la population de tubificidae ainsi que la bioremédiation sont toujours actifs en présence de contamination ce qui confirme le potentiel de dévelopement de ces organismes en ingénierie écologique. La bioadvection du sédiment et des contaminants par les tubificidae est quantifiée grâce à l’utilisation de luminophores (traceurs particulaires). Le processus de bioconvoyage engendre l’ensevelissement et le renouvellement de la 4 HOANG T.K. 2018 quantité de polluant autour du système racinaires des Typha latifolia. Les coefficients d’enrichissement des racines (ECR) pour le Cadmium sont plus élevés en présence de bioturbation. L’interaction entre l’activité des tubificidés et la contamination par le Cd depusi la colonne d’eau influence le bilan de masse du cadmium. Les flux de métaux du sédiment vers les racines sont estimés de l’ordre de 0.02+/-0.00 et 0.07+/-0.03 µg Cd par jour sans et avec bioturbation, respectivement. Dans le cas de l’atrazine, l’influence de la bioturbation sur les propriétés chimiques du sédiment (pH, porosité, matière organique, etc.) explique les modifications observées au niveau du processus d’adsorption-désorption de l’atrazine. Il est démontré que la bioturbation par les tubificidae accélère la mobilité de l’atrazine et favorise sa biodisponibilité en passant de la forme adsorbée sur les particules de sédiment vers la forme libre dans l’eau interstitielle. Les coefficients d’enrichissement de l’atrazine dans les racines de typha sont également plus élevés en présence de bioturbation (7.16 ± 0.66) que sans bioturbation (5.99 ± 0.64). La biodégradation de l’atrazine est significativement plus avancée en présence de bioturbation comme le démontre un nombre plus élevé de métabolites, et une quantité de métabolites plus importante mesurés dans les racines Typha latifolia. Notre étude démontre le potentiel apporté par la bioturbation comme facteur d’amélioration des performances de la phytoremédiation, pour un métal lourd comme pour un micro-polluant organique. Les recherches futures sur la base de ces résultats devraient s'intéresser à mettre en évidence l’influence de la bioturbation sur les communautés de micro-organismes en charge de la dégradation des composés organiques persistants. Mots clés: Ingénierie écologique; bioturbation; phytoremediation; pollution aquatique; zone humide; cadmium; atrazine; 14C. 5 HOANG T.K. 2018 SUMMARY The development of efficient bioremediation techniques to reduce pollutant loads in aquatic ecosystems is a challenging research question for ecological engineering. The accuracy of phytoremediation processes has been primarily demonstrated by individual applications on soils or water sediments. The present Ph.D. aims to demonstrate the interest of additional bioturbation combined to phytoremediation processes for the improvement bioremediation efficiency of aquatic sediments. This strategy benefits are tested experimentally in controlled laboratory conditions with a serie of microcosms reproducing each a portion of water/sediment interface such as in wetland areas. In our experiments, bioturbation was carried out by a conveyor-belt invertebrate population, the tubificidae oligochaetes Tubifex tubifex, well known as an active ecological engineer. The phytoremediation was conducted by the riparian plant Typha latifolia known for its ability to remove organic and inorganic pollutants from sediments by accumulation into its biomass. The experiments were managed to demonstrate the effects of this biological influence (plant and inveterbrate) on the mass balances and fluxes of one metal and one pesticide as models of pollutants. Cadmium as a heavy, inorganic and conservative metal pollutant was introduced as a pulse input in the overlying water of the contaminated microcosms, with a cadmium concentration of 20 µg.L-1 in at the initial time of the experiment that lasted one month. In a second experiment, atrazine was mixed in the whole sediment column at the initial time in order to reach
Load more

Recommended publications
  • Sediment Diagenesis
    Sediment Diagenesis http://eps.mcgill.ca/~courses/c542/ SSdiedimen t Diagenes is Diagenesis refers to the sum of all the processes that bring about changes (e.g ., composition and texture) in a sediment or sedimentary rock subsequent to deposition in water. The processes may be physical, chemical, and/or biological in nature and may occur at any time subsequent to the arrival of a particle at the sediment‐water interface. The range of physical and chemical conditions included in diagenesis is 0 to 200oC, 1 to 2000 bars and water salinities from fresh water to concentrated brines. In fact, the range of diagenetic environments is potentially large and diagenesis can occur in any depositional or post‐depositional setting in which a sediment or rock may be placed by sedimentary or tectonic processes. This includes deep burial processes but excldludes more extensive hig h temperature or pressure metamorphic processes. Early diagenesis refers to changes occurring during burial up to a few hundred meters where elevated temperatures are not encountered (< 140oC) and where uplift above sea level does not occur, so that pore spaces of the sediment are continually filled with water. EElarly Diagenesi s 1. Physical effects: compaction. 2. Biological/physical/chemical influence of burrowing organisms: bioturbation and bioirrigation. 3. Formation of new minerals and modification of pre‐existing minerals. 4. Complete or partial dissolution of minerals. 5. Post‐depositional mobilization and migration of elements. 6. BtilBacterial ddtidegradation of organic matter. Physical effects and compaction (resulting from burial and overburden in the sediment column, most significant in fine-grained sediments – shale) Porosity = φ = volume of pore water/volume of total sediment EElarly Diagenesi s 1.
    [Show full text]
  • The Earliest Bioturbators As Ecosystem Engineers
    Downloaded from http://sp.lyellcollection.org/ by guest on September 27, 2021 Engineering the Cambrian explosion: the earliest bioturbators as ecosystem engineers LIAM G. HERRINGSHAW1,2*, RICHARD H. T. CALLOW1,3 & DUNCAN MCILROY1 1Department of Earth Sciences, Memorial University of Newfoundland, Prince Philip Drive, St John’s, NL, A1B 3X5, Canada 2Geology, School of Environmental Sciences, University of Hull, Cottingham Road, Hull HU6 7RX, UK 3Statoil ASA, Stavanger 4035, Norway *Correspondence: [email protected] Abstract: By applying modern biological criteria to trace fossil types and assessing burrow mor- phology, complexity, depth, potential burrow function and the likelihood of bioirrigation, we assign ecosystem engineering impact (EEI) values to the key ichnotaxa in the lowermost Cambrian (Fortunian). Surface traces such as Monomorphichnus have minimal impact on sediment properties and have very low EEI values; quasi-infaunal traces of organisms that were surficial modifiers or biodiffusors, such as Planolites, have moderate EEI values; and deeper infaunal, gallery biodiffu- sive or upward-conveying/downward-conveying traces, such as Teichichnus and Gyrolithes, have the highest EEI values. The key Cambrian ichnotaxon Treptichnus pedum has a moderate to high EEI value, depending on its functional interpretation. Most of the major functional groups of mod- ern bioturbators are found to have evolved during the earliest Cambrian, including burrow types that are highly likely to have been bioirrigated. In fine-grained (or microbially bound) sedimentary environments, trace-makers of bioirrigated burrows would have had a particularly significant impact, generating advective fluid flow within the sediment for the first time, in marked contrast with the otherwise diffusive porewater systems of the Proterozoic.
    [Show full text]
  • Relationship Between Heavy Metals and Dissolved Organic Matter Released from Sediment by Bioturbation/Bioirrigation
    JOURNAL OF ENVIRONMENTAL SCIENCES 75 (2019) 216– 223 Available online at www.sciencedirect.com ScienceDirect www.elsevier.com/locate/jes Relationship between heavy metals and dissolved organic matter released from sediment by bioturbation/bioirrigation Yi He, Bin Men⁎, Xiaofang Yang, Yaxuan Li, Hui Xu, Dongsheng Wang State Key Laboratory of Environmental Aquatic Chemistry, Research Centre for Eco-Environmental Science, Chinese Academy of Sciences, Beijing 100085, China ARTICLE INFO ABSTRACT Article history: Organic matter (OM) is an important component of sediment. Bioturbation/bioirrigation can Received 4 December 2017 remobilize OM and heavy metals that were previously buried in the sediment. The Revised 22 March 2018 remobilization of buried organic matter, thallium (Tl), cadmium (Cd), copper (Cu) and zinc Accepted 22 March 2018 (Zn) from sediment was studied in a laboratory experiment with three organisms: tubificid, Available online 29 March 2018 chironomid larvae and loach. Results showed that bioturbation/bioirrigation promoted the release of dissolved organic matter (DOM) and dissolved Tl, Cd, Cu and Zn, but only Keywords: dissolved Zn concentrations decreased with exposure time in overlying water. The Bioturbation/bioirrigation presence of organisms altered the compositions of DOM released from sediment, Heavy metal considerably increasing the percentage of fulvic acid-like materials (FA) and humic acid- Sediment like materials (HA). In addition, bioturbation/bioirrigation accelerated the growth and DOM reproduction of bacteria to enhance the proportion of soluble microbial byproduct-like materials (SMP). The DOM was divided into five regions in the three-dimensional excitation emission matrix (3D-EEM), and each part had different correlation with the dissolved heavy metal concentrations.
    [Show full text]
  • Intermittent Bioirrigation and Oxygen Dynamics in Permeable Sediments
    Intermittent bioirrigation and oxygen dynamics in permeable sediments: An experimental and modeling study of three tellinid bivalves Nils Volkenborn1,7, Christof Meile2, Lubos Polerecky3, Conrad A. Pilditch4, Alf Norkko5, Joanna Norkko5, Judi E. Hewitt6, Simon F. Thrush6, David S. Wethey1 and Sarah A. Woodin1 1 Department of Biological Sciences, University of South Carolina, Columbia, South Carolina 29208, USA 2 Department of Marine Sciences, University of Georgia, Athens, Georgia 30602, USA 3 Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany 4 Department of Biological Sciences, University of Waikato, Hamilton 3240, New Zealand 5 Tvärminne Zoological Station, University of Helsinki, 10900 Hanko, Finland 6 National Institute of Water and Atmospheric Research, Hamilton 2005, New Zealand 7 corresponding author: [email protected] 1 Abstract 2 To explore the dynamic nature of geochemical conditions in bioirrigated marine permeable 3 sediments, we studied the hydraulic activity of 3 tellinacean bivalve molluscs (the Pacific species 4 0DFRPDQDVXWD and 0DFRPRQDOLOLDQD, and the northern Atlantic and Pacific species 0DFRPD 5 EDOWKLFD). We combined porewater pressure sensing, time–lapse photography and oxygen 6 imaging to quantify the durations and frequencies of tellinid irrigation activity and the associated 7 oxygen dynamics in the sediment. Porewater pressure records of all tellinids were dominated by 8 intermittent porewater pressurization, induced by periodic water injection into the sediment 9 through their excurrent siphons, which resulted in intermittent oxygen supply to subsurface 10 sediments. The durations of irrigation (2–12 min long) and intervals between subsequent 11 irrigation bouts (1.5–13 min) varied among tellinid species and individual sizes. For large 0 12 OLOLDQD and 0 QDVXWD, the average durations of intervals between irrigation bouts were 13 sufficiently long (10 min and 4 min, respectively) to allow complete oxygen consumption in 14 between irrigation bouts in all tested sediment types.
    [Show full text]
  • Investigation of Heavy Metals Release from Sediment with Bioturbation/Bioirrigation
    Chemosphere 184 (2017) 235e243 Contents lists available at ScienceDirect Chemosphere journal homepage: www.elsevier.com/locate/chemosphere Investigation of heavy metals release from sediment with bioturbation/bioirrigation * ** Yi He, Bin Men , Xiaofang Yang, Yaxuan Li, Hui Xu, Dongsheng Wang State Key Laboratory of Environmental Aquatic Chemistry, Research Centre for Eco-Environmental Science, Chinese Academy of Sciences, Beijing 100085, China highlights graphical abstract DGT-Cu fluxes in pore water Adsorption increased with the presence of Water Complexation Fe/Mn oxidates chironomid larvae. Dissolved Me+ fl Tubificid Heavy metals were highly in uenced Chironomid larvae Particulate Me+ by bioturbation/bioirrigation of Loach O2 loach. Settling fi + Organisms has signi cant impact on Bioavailable Me + Biofilms Me -AVS Adsorption particulate heavy metals release from Me+-Carbonates Sediment particles Me+-OM sediment. Me+ Fe/Mn hydrous oxides may sorb or Sediment Pore water coprecipitate with Cd, Cu, Zn and Pb. article info abstract Article history: Bioturbation/bioirrigation can affect the remobilization of metals from sediments. In this study, exper- Received 19 January 2017 iments were performed to examine the effect of bioturbation/bioirrigation by different organisms on Received in revised form cadmium (Cd), copper (Cu), zinc (Zn) and lead (Pb) releasing from the spiked sediment. The diffusive 16 May 2017 gradient in thin films technique (DGT) revealed that at the end of exposure time, the labile heavy metals Accepted 21 May 2017 concentrations in the pore water for all metal and organisms combinations except Cu and chironomid Available online 2 June 2017 larvae were much lower than that in the control group. However, the concentrations of heavy metals Handling Editor: Martine Leermakers detected by the DGT were virtually indistinguishable among the treatments with tubificid, chironomid larvae and loach.
    [Show full text]
  • (SPERA). Environmental Radioactivity And
    AU9918790 *#*""• «*> SPERA98 Radioactivity and the Environment Christchurch, New Zealand 16 - 20 February 1998 Environmental Radioactivity and its Application in Environmental Studies Conference Papers 30-49 SPERA98 The 5th Conference of the South Pacific Environmental Radioactivity Association ENVIRONMENTAL RADIOACTIVITY AND ITS APPLICA TION IN ENVIRONMENTAL STUDIES The South Pacific Environmental Radioactivity Association, SPERA, is an apolitical, scientific organisation whose primary objective is to encourage and facilitate communication among scientists working in the South Pacif c region in the field of environmental radioactivity, involving study of the occurrence, behaviour and impact of radioactive species present in the environment due either to natural processes or resulting from human activities. Since its inception in 1991, the membership of SPERA has grown steadily and includes scientists working in the fields of environmental radioactivity monitoring, marine and estuarine studies, geochemistry (including soil erosion studies and waste disposal), uranium mining and mineral sands industries, radioecology, education, archaeology, and radon studies, from many countries around the world. Previous SPERA Environmental Radioactivity Workshops were held in 1991 (Tahiti - the Association's foundation meeting), 1992 (Dunedin, New Zealand), 1994 (Canberra, Australia), and 1996 (Darwin, Australia), with participants coming from many countries around the world. Although SPERA has a South Pacific focus, the Workshops are more international with participants welcome from all countries. The 1998 meeting, SPERA98, was styled more as a Conference than a Workshop, because of the record attendance by 53 participants from 14 countries, with 48 papers presented. The meeting focused primarily on applications of environmental radionuclides in environmental studies and problem solving, though many papers concerning other areas within the Association's interests were also presented.
    [Show full text]
  • UNSCEAR 2020 Report
    United Nations Scientific Committee on the Effects of Atomic Radiation SOURCES, EFFECTS AND RISKS OF IONIZING RADIATION UNSCEAR 2020 Report SCIENTIFIC ANNEX B: Levels and effects of radiation exposure due to the accident at the Fukushima Daiichi Nuclear Power Station: implications of information published since the UNSCEAR 2013 Report ADVANCEAnnex COPYB only AMAD activity median aerodynamic diameter ARS acute radiation syndrome ATDM atmospheric transport, dispersion and deposition modelling CNPS Chernobyl Nuclear Power Station CR concentration ratio DoD Department of Defense DOE Department of Energy DRF dose reduction factor EMDB Environment Monitoring Database FDNPS Fukushima Daiichi Nuclear Power Station FM fresh mass FHMS Fukushima Health Management Survey IAEA International Atomic Energy Agency ICRP International Commission on Radiological Protection ICSA intensive contamination survey area JAEA Japan Atomic Energy Agency JST Japan Standard Time M2013 Model used in the UNSCEAR 2013 Report M2020 Model for estimating external doses from deposited radionuclides. An update of the model used in the UNSCEAR 2013 Report for estimating external doses from deposited radionuclides MEXT Ministry of Education, Culture, Sports, Science and Technology MHLW Ministry of Health, Labour and Welfare MOE Ministry of Environment MRI magnetic resonance imaging NIRS National Institute of Radiological Sciences OOP out of prefecture RET rearranged during transfection RIP radiocaesium interception potential SDA special decontamination area TEPCO Tokyo Electric
    [Show full text]
  • Spatial Distributions of Surface Sedimentary Organics and Sediment Profile Image Characteristics in a High-Energy Temperate Marine Riomar: the West Gironde Mud Patch
    Journal of Marine Science and Engineering Article Spatial Distributions of Surface Sedimentary Organics and Sediment Profile Image Characteristics in a High-Energy Temperate Marine RiOMar: The West Gironde Mud Patch Bastien Lamarque 1,* , Bruno Deflandre 2 , Adriana Galindo Dalto 3 , Sabine Schmidt 2 , Alicia Romero-Ramirez 1, Frédéric Garabetian 1, Nicolas Dubosq 2 ,Mélanie Diaz 2 , Florent Grasso 4 , Aldo Sottolichio 2, Guillaume Bernard 1 , Hervé Gillet 2, Marie-Ange Cordier 2, Dominique Poirier 2, Pascal Lebleu 2,†, Hervé Derriennic 2, Martin Danilo 2,Márcio Murilo Barboza Tenório 3 and Antoine Grémare 1 1 UMR EPOC, Université de Bordeaux, CNRS, UMR 5805, Station Marine d’Arcachon, 2 rue du Professeur Jolyet, 33120 Arcachon, France; [email protected] (A.R.-R.); [email protected] (F.G.); [email protected] (G.B.); [email protected] (A.G.) 2 UMR EPOC, Université de Bordeaux, CNRS, UMR 5805, Bâtiments B18/B18N, Allée Geoffroy Saint-Hilaire, CEDEX, 33615 Pessac, France; bruno.defl[email protected] (B.D.); [email protected] (S.S.); [email protected] (N.D.); [email protected] (M.D.); [email protected] (A.S.); [email protected] (H.G.); [email protected] (M.-A.C.); [email protected] (D.P.); [email protected] (P.L.); [email protected] (H.D.); Citation: Lamarque, B.; Deflandre, [email protected] (M.D.) 3 B.; Galindo Dalto, A.; Schmidt, S.; Departamento de Biologia Marinha, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Romero-Ramirez, A.; Garabetian, F.; Rio de Janeiro CEP 21941-902, Brazil; [email protected] (A.G.D.); [email protected] (M.M.B.T.) 4 IFREMER Brest—DYNECO/DHYSED, Centre de Bretagne, CS 10070, 29280 Plouzané, France; Dubosq, N.; Diaz, M.; Grasso, F.; fl[email protected] Sottolichio, A.; et al.
    [Show full text]
  • Effects of Bioirrigation of Non-Biting Midges (Diptera
    www.nature.com/scientificreports OPEN Effects of bioirrigation of non-biting midges (Diptera: Chironomidae) on lake sediment respiration Received: 22 January 2016 Viktor Baranov1,2, Jörg Lewandowski1,2, Paul Romeijn3, Gabriel Singer1 & Stefan Krause3 Accepted: 16 May 2016 Bioirrigation or the transport of fluids into the sediment matrix due to the activities of organisms such Published: 03 June 2016 as bloodworms (larvae of Diptera, Chironomidae), has substantial impacts on sediment respiration in lakes. However, previous quantifications of bioirrigation impacts of Chironomidae have been limited by technical challenges such as the difficulty to separate faunal and bacterial respiration. This paper describes a novel method based on the bioreactive tracer resazurin for measuring respiration in-situ in non-sealed systems with constant oxygen supply. Applying this new method in microcosm experiments revealed that bioirrigation enhanced sediment respiration by up to 2.5 times. The new method is yielding lower oxygen consumption than previously reported, as it is only sensitive to aerobic heterotrophous respiration and not to other processes causing oxygen decrease. Hence it decouples the quantification of respiration of animals and inorganic oxygen consumption from microbe respiration in sediment. Sediment respiration rates can be influenced substantially by bioturbation1,2, which encompasses all “transport processes carried out by animals (and plants) that directly or indirectly affect sediment matrices”3. In particular bioturbation associated ventilation of animal burrows has previously been found to have significant impact on sediment respiration2,4,5. Burrow ventilation involves the rapid exchange of water between the overlying water column and subsurface sediments and is caused by animals flushing their open or blind-ended burrows with overlying water for respiration and feeding purposes6.
    [Show full text]
  • Hydrochemical Assessment of the Irrigation Water Quality of the El-Salam Canal, Egypt
    water Article Hydrochemical Assessment of the Irrigation Water Quality of the El-Salam Canal, Egypt Yasser A. El-Amier 1,* , Wafaa K. Kotb 1, Giuliano Bonanomi 2,3, Hala Fakhry 4, Najat A. Marraiki 5 and Ahmed M. Abd-ElGawad 1,6,* 1 Department of Botany, Faculty of Science, Mansoura University, Mansoura 35516, Egypt; [email protected] 2 Department of Agricultural Sciences, University of Naples Federico II, Via Università 100, 80055 Portici, Italy; [email protected] 3 Task Force on Microbiome Studies, University of Naples Federico II, 80131 Naples, Italy 4 City of Scientific Research and Technological Applications (SRTA-City), New Borg El-Arab City 21934, Egypt; [email protected] 5 Department of Botany & Microbiology, College of Science, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia; [email protected] 6 Plant Production Department, College of Food & Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia * Correspondence: [email protected] (Y.A.E.-A.); [email protected] (A.M.A.-E.); Tel.: +20-10-1722-9120 (Y.A.E.-A.); +96-65-6268-0864 (A.M.A.-E.) Abstract: The El-Salam canal in Egypt is considered an important stream of fresh water for the agricultural sector that extends from the Nile River to Sinai, while it is subjected to several anthro- pogenic stresses. In this study, five-georeferenced stations (named from S1 to S5) were monitored Citation: El-Amier, Y.A.; Kotb, W.K.; along the El-Salam Canal before El-Sahara of the Suez Canal, via the estimation of the WQ index Bonanomi, G.; Fakhry, H.; Marraiki, based on major cations and anions analysis including salinity hazard, permeability index, residual N.A.; Abd-ElGawad, A.M.
    [Show full text]
  • Estuarine and Coastal Sediments – Coupled Biogeochemical Cycling DJ Burdige, Old Dominion University, Norfolk, VA, USA
    5.09 Estuarine and Coastal Sediments – Coupled Biogeochemical Cycling DJ Burdige, Old Dominion University, Norfolk, VA, USA © 2011 Elsevier Inc. All rights reserved. 5.09.1 Introduction 279 5.09.2 Introduction to Biogeochemical Processes in Sediments 280 5.09.2.1 Organic Matter Remineralization Processes 280 5.09.2.1.1 The anaerobic food chain for organic matter remineralization 281 5.09.2.2 Chemolithotrophic Reactions 281 5.09.2.2.1 Aerobic processes 281 5.09.2.2.2 Anaerobic processes 282 5.09.2.3 Linkages between Chemolithotrophic and Organic Matter Remineralization Processes 283 5.09.2.4 Seasonality and Non-Steady-State Processes in Estuarine and Coastal Sediments 284 5.09.3 Linkages of Biogeochemical Processes and Transport Processes and the Occurrence of Mixed Redox Conditions in Sediments 285 5.09.4 The Classification of Estuarine and Coastal Sediments 285 5.09.4.1 Steadily Accumulating Sediments 287 5.09.4.2 Sediments Subject to Extensive Physical Reworking 289 5.09.4.3 High Permeability, Sandy Sediments 289 5.09.4.4 Bypass Zone Sediments 291 5.09.4.5 Macrophyte-Dominated Sediments 291 5.09.4.6 Intertidal Mudflats and Sandflats 292 5.09.5 Sediment Oxygen Consumption 293 5.09.6 Organotrophic Denitrification, Anammox and Anoxic Nitrification 293 5.09.6.1 Anammox 295 5.09.6.2 Anoxic Nitrification 295 5.09.6.3 Nitrogen Loss from Sediments: Closing Thoughts 296 5.09.7 Iron and Manganese Reduction 296 5.09.8 Sulfate Reduction and Sulfide Mineral Formation 300 5.09.8.1 Pyrite Formation in Sediments 301 5.09.8.2 Pyrite Burial and Sulfur Burial Efficiency 302 5.09.9 Methanogenesis, Methane Oxidation, and Methane Fluxes to the Atmosphere 303 5.09.10 Trace Metal Cycling 304 5.09.11 Concluding Remarks 307 References 308 Abstract A variety of macroscopic physical and biological forcing functions act on estuarine and coastal sediments across a range of time and space scales, and can have a profound effect on the processes associated with the remineralization of sedimentary organic matter.
    [Show full text]
  • Biological and Biogeochemical Methods for Estimating Bio-Irrigation: a Case Study in the Oosterschelde Estuary
    Biological and biogeochemical methods for estimating bio-irrigation: a case study in the Oosterschelde estuary. Emil De Borger1,2, Justin Tiano2,1, Ulrike Braeckman1, Tom Ysebaert2,3, Karline Soetaert2,1. 1Ghent University, Department of Biology, Marine Biology Research Group, Krijgslaan 281/S8, 9000 Ghent, Belgium 5 2Royal Netherlands Institute of Sea Research (NIOZ), Department of Estuarine and Delta Systems, and Utrecht University, Korringaweg 7, P.O. Box 140, 4401 NT Yerseke, The Netherlands 3Wageningen Marine Research, Wageningen University & Research, Wageningen, Netherlands Correspondence to : Emil De Borger ([email protected]) Abstract 10 Bio-irrigation, the exchange of solutes between overlying water and sediment by benthic organisms, plays an important role in sediment biogeochemistry. Bio-irrigation is either quantified based on tracer data or, a community (bio-) irrigation potential (IPc) can be derived based on biological traits. Both these techniques were applied in a seasonal study of bio-irrigation in subtidal and intertidal habitats in a temperate estuary. The combination of a tracer time series with high temporal resolution and a mechanistic model allowed to simultaneously estimate the pumping rate, and the sediment attenuation, a parameter that 15 determines irrigation depth. We show that although the total pumping rate is similar in both intertidal and subtidal areas, there is deeper bio-irrigation in intertidal areas. This is explained by higher densities of bio-irrigators such as Corophium sp., Heteromastus filiformis and Arenicola marina in the intertidal, as opposed to the subtidal. The IPc correlated more strongly with the attenuation coefficient than the pumping rate, which highlights that the IPc index reflects more the bio-irrigation depth rather than the rate.
    [Show full text]