Essential Roles for Cohesin in Kinetochore and Spindle Function in Xenopus Egg Extracts
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Meiotic Cohesin and Variants Associated with Human Reproductive Aging and Disease
fcell-09-710033 July 27, 2021 Time: 16:27 # 1 REVIEW published: 02 August 2021 doi: 10.3389/fcell.2021.710033 Meiotic Cohesin and Variants Associated With Human Reproductive Aging and Disease Rachel Beverley1, Meredith L. Snook1 and Miguel Angel Brieño-Enríquez2* 1 Division of Reproductive Endocrinology and Infertility, Department of Obstetrics, Gynecology, and Reproductive Sciences, University of Pittsburgh, Pittsburgh, PA, United States, 2 Magee-Womens Research Institute, Department of Obstetrics, Gynecology, and Reproductive Sciences, University of Pittsburgh, Pittsburgh, PA, United States Successful human reproduction relies on the well-orchestrated development of competent gametes through the process of meiosis. The loading of cohesin, a multi- protein complex, is a key event in the initiation of mammalian meiosis. Establishment of sister chromatid cohesion via cohesin rings is essential for ensuring homologous recombination-mediated DNA repair and future proper chromosome segregation. Cohesin proteins loaded during female fetal life are not replenished over time, and therefore are a potential etiology of age-related aneuploidy in oocytes resulting in Edited by: decreased fecundity and increased infertility and miscarriage rates with advancing Karen Schindler, Rutgers, The State University maternal age. Herein, we provide a brief overview of meiotic cohesin and summarize of New Jersey, United States the human genetic studies which have identified genetic variants of cohesin proteins and Reviewed by: the associated reproductive phenotypes -
Distinct Functions of Human Cohesin-SA1 and Cohesin-SA2 in Double-Strand Break Repair
Distinct Functions of Human Cohesin-SA1 and Cohesin-SA2 in Double-Strand Break Repair Xiangduo Kong,a Alexander R. Ball, Jr.,a Hoang Xuan Pham,a Weihua Zeng,a* Hsiao-Yuan Chen,a John A. Schmiesing,a Jong-Soo Kim,a* Michael Berns,b,c Kyoko Yokomoria Department of Biological Chemistry, School of Medicine, University of California, Irvine, California, USAa; Beckman Laser Instituteb and Department of Biomedical Engineering, Samueli School of Engineering,c University of California, Irvine, California, USA Cohesin is an essential multiprotein complex that mediates sister chromatid cohesion critical for proper segregation of chromo- somes during cell division. Cohesin is also involved in DNA double-strand break (DSB) repair. In mammalian cells, cohesin is involved in both DSB repair and the damage checkpoint response, although the relationship between these two functions is un- clear. Two cohesins differing by one subunit (SA1 or SA2) are present in somatic cells, but their functional specificities with re- gard to DNA repair remain enigmatic. We found that cohesin-SA2 is the main complex corecruited with the cohesin-loading factor NIPBL to DNA damage sites in an S/G2-phase-specific manner. Replacing the diverged C-terminal region of SA1 with the corresponding region of SA2 confers this activity on SA1. Depletion of SA2 but not SA1 decreased sister chromatid homologous recombination repair and affected repair pathway choice, indicating that DNA repair activity is specifically associated with cohe- sin recruited to damage sites. In contrast, both cohesin complexes function in the intra-S checkpoint, indicating that cell cycle- specific damage site accumulation is not a prerequisite for cohesin’s intra-S checkpoint function. -
Cohesin Architecture and Clustering in Vivo Siheng Xiang, Douglas Koshland*
RESEARCH ARTICLE Cohesin architecture and clustering in vivo Siheng Xiang, Douglas Koshland* Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States Abstract Cohesin helps mediate sister chromatid cohesion, chromosome condensation, DNA repair, and transcription regulation. We exploited proximity-dependent labeling to define the in vivo interactions of cohesin domains with DNA or with other cohesin domains that lie within the same or in different cohesin complexes. Our results suggest that both cohesin’s head and hinge domains are proximal to DNA, and cohesin structure is dynamic with differential folding of its coiled coil regions to generate butterfly confirmations. This method also reveals that cohesins form ordered clusters on and off DNA. The levels of cohesin clusters and their distribution on chromosomes are cell cycle-regulated. Cohesin clustering is likely necessary for cohesion maintenance because clustering and maintenance uniquely require the same subset of cohesin domains and the auxiliary cohesin factor Pds5p. These conclusions provide important new mechanistic and biological insights into the architecture of the cohesin complex, cohesin–cohesin interactions, and cohesin’s tethering and loop-extruding activities. Introduction Chromosome segregation, DNA damage repair, and the regulation of gene expression require the tethering or folding of chromosomes (Uhlmann, 2016; Onn et al., 2008). Remarkably, these differ- ent types of chromosome organizations are all mediated by a conserved family of protein complexes *For correspondence: [email protected] called structural maintenance of chromosomes (SMC) (Onn et al., 2008; Nolivos and Sherratt, 2014; Hirano, 2016; Hassler et al., 2018). SMC complexes tether and fold chromosomes by two Competing interests: The activities. -
Chromosome Missegregation in Human Cells Arises Through Specific
Chromosome missegregation in human cells arises through specific types of kinetochore–microtubule attachment errors Sarah L. Thompson and Duane A. Compton1 Department of Biochemistry, Dartmouth Medical School, Hanover, NH 03755; and Cancer Mechanisms Program, Norris Cotton Cancer Center, Lebanon, NH 03766 Edited by John W. Sedat, University of California, San Francisco School of Medicine, San Francisco, CA, and approved September 15, 2011 (received for review June 17, 2011) Most solid tumors are aneuploid, and many missegregate chro- cur, particularly in early phases of mitosis, as a consequence mosomes at high rates in a phenomenon called chromosomal of the stochastic interactions between microtubules and kinet- instability (CIN). CIN reflects the erosion of mitotic fidelity, and it ochores (11). A prominent error is when a single kinetochore correlates with poor patient prognosis and drug resistance. The binds microtubules oriented toward both spindle poles. This most common mechanism causing CIN is the persistence of improper error is called merotely (12, 13). The persistence of merotely kinetochore–microtubule attachments called merotely. Chromo- undermines chromosome segregation because merotelic kinet- somes with merotelic kinetochores often manifest as lagging chro- ochores experience poleward force toward both spindle poles. As mosomes in anaphase, suggesting that lagging chromosomes fail a consequence, merotely often results in the appearance of lag- to segregate properly. However, it remains unknown whether the ging chromosomes in anaphase, and tumor cells with CIN have lagging chromosomes observed in anaphase segregate to the cor- elevated rates of lagging chromosomes and merotelic attach- rect or incorrect daughter cell. To address this question, we tracked ments (9). Moreover, it was shown that increasing the correction the segregation of a single human chromosome during cell division rate of merotely by stimulating the dynamics of k-MT attachment by using LacI-GFP to target an integrated LacO array. -
Shaping of the 3D Genome by the Atpase Machine Cohesin Yoori Kim1 and Hongtao Yu1,2
Kim and Yu Experimental & Molecular Medicine (2020) 52:1891–1897 https://doi.org/10.1038/s12276-020-00526-2 Experimental & Molecular Medicine REVIEW ARTICLE Open Access Shaping of the 3D genome by the ATPase machine cohesin Yoori Kim1 and Hongtao Yu1,2 Abstract The spatial organization of the genome is critical for fundamental biological processes, including transcription, genome replication, and segregation. Chromatin is compacted and organized with defined patterns and proper dynamics during the cell cycle. Aided by direct visualization and indirect genome reconstruction tools, recent discoveries have advanced our understanding of how interphase chromatin is dynamically folded at the molecular level. Here, we review the current understanding of interphase genome organization with a focus on the major regulator of genome structure, the cohesin complex. We further discuss how cohesin harnesses the energy of ATP hydrolysis to shape the genome by extruding chromatin loops. Introduction dynamic and preferentially form at certain genomic loci to The diploid human genome contains 46 chromosomes regulate gene expression and other DNA transactions. In and 6 billion nucleotides of DNA that, when fully exten- this article, we review our current understanding of the ded, span a length of over 2 m. The genomic DNA has to local and global landscapes of interphase chromatin and fi 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; be folded and con ned in the nucleus, which has a discuss how cohesin structures chromatin. dimension of ~10 μm. The compaction of genomic DNA also needs to be dynamic and orderly to allow myriad Local folding of interphase chromatin biochemical reactions that occur on the DNA template, Until recently, the dominant hypothesis for genome including DNA replication and repair, homologous packaging was the hierarchical folding model. -
The Emerging Role of Cohesin in the DNA Damage Response
G C A T T A C G G C A T genes Review The Emerging Role of Cohesin in the DNA Damage Response Ireneusz Litwin * , Ewa Pilarczyk and Robert Wysocki Institute of Experimental Biology, University of Wroclaw, 50-328 Wroclaw, Poland; [email protected] (E.P.); [email protected] (R.W.) * Correspondence: [email protected]; Tel.: +48-71-375-4126 Received: 29 October 2018; Accepted: 21 November 2018; Published: 28 November 2018 Abstract: Faithful transmission of genetic material is crucial for all organisms since changes in genetic information may result in genomic instability that causes developmental disorders and cancers. Thus, understanding the mechanisms that preserve genome integrity is of fundamental importance. Cohesin is a multiprotein complex whose canonical function is to hold sister chromatids together from S-phase until the onset of anaphase to ensure the equal division of chromosomes. However, recent research points to a crucial function of cohesin in the DNA damage response (DDR). In this review, we summarize recent advances in the understanding of cohesin function in DNA damage signaling and repair. First, we focus on cohesin architecture and molecular mechanisms that govern sister chromatid cohesion. Next, we briefly characterize the main DDR pathways. Finally, we describe mechanisms that determine cohesin accumulation at DNA damage sites and discuss possible roles of cohesin in DDR. Keywords: cohesin; cohesin loader; DNA double-strand breaks; replication stress; DNA damage tolerance 1. Introduction Genomes of all living organisms are continuously challenged by endogenous and exogenous insults that threaten genome stability. It has been estimated that human cells suffer more than 70,000 DNA lesions per day, most of which are single-strand DNA breaks (SSBs) [1]. -
Prevalence of Linear Configuration Among Chain Trivalents at Metaphase I in Pollen Mother Cells of Petunia Axillaris (LAM.) B
_??_1991 by Cytologia, Tokyo Cytologia 56: 367 -371 , 1991 Prevalence of Linear Configuration among Chain Trivalents at Metaphase I in Pollen Mother Cells of Petunia axillaris (LAM.) B. S. P. P. China Pullaiah, P. S. R. L. Narasinga Rao and V. Padmaja Department of Botany, Andhra University, Waltair, India Accepted February 28, 1991 At somatic metaphase the kinetochore of each sister chromatid interacts with the spindle in such a way that the two subsequently disjoin one to each pole. At metaphase I of meiosis in disomics, a pair of chromatids is one half of a bivalent. Here, in their involvement with the spindle, the two kinetochores of a chromatid pair are not poised disjunctionally, and the centromere is thus said to be syntelic. For a 'double kinetochore' of each member of a meiotic bivalent, 'syntelic' aspect is thus a derived state. Failure of the 'double kinetochore' to attain to 'syntelic' state is rare for the members of a bivalent. On the other hand, the 'kinetochore pair' of a univalent at meiosis I may assume an amphitelic state at metaphase I even if the initial development was towards a syntelic state (Bauer et al. 1961, Sybenga 1975). When we consider chain trivalents, which indeed are the simplest of multivalents, syntelic state for all three kinetochore pairs is quite prevalent and is often seen in the alternate configuration where the mid-member is poised disjunctionally from both its neighbours. Much rarer is the variant, where the three syntelic centromeres disjoin in a 2-1 manner as in the case of ad jacent orientation. -
Esco1 and Esco2 Regulate Distinct Cohesin Functions During Cell Cycle Progression
Esco1 and Esco2 regulate distinct cohesin functions during cell cycle progression Reem M. Alomera,1, Eulália M. L. da Silvab,1, Jingrong Chenb, Katarzyna M. Piekarzb, Katherine McDonaldb, Courtney G. Sansamb, Christopher L. Sansama,b, and Susannah Rankina,b,2 aDepartment of Cell Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104; and bProgram in Cell Cycle and Cancer Biology, Oklahoma Medical Research Foundation, Oklahoma City, OK 73104 Edited by Douglas Koshland, University of California, Berkeley, CA, and approved July 31, 2017 (received for review May 19, 2017) Sister chromatids are tethered together by the cohesin complex from Finally, chromatin immunoprecipitation experiments in somatic the time they are made until their separation at anaphase. The ability cells indicate that Esco1 and Esco2 have distinct chromosomal of cohesin to tether sister chromatids together depends on acetyla- addresses. Colocalization of Esco1 with the insulator protein tion of its Smc3 subunit by members of the Eco1 family of cohesin CTCF and cohesin at the base of chromosome loops suggests that acetyltransferases. Vertebrates express two orthologs of Eco1, called Esco1 promotes normal chromosome structure (14, 15). Consistent Esco1 and Esco2, both of which are capable of modifying Smc3, but with this, depletion of Esco1 in somatic cells results in dysregulated their relative contributions to sister chromatid cohesion are unknown. transcriptional profiles (15). In contrast, Esco2 is localized to dis- We therefore set out to determine the precise contributions of Esco1 tinctly different sites, perhaps due to association with the CoREST and Esco2 to cohesion in vertebrate cells. Here we show that cohesion repressive complex (15, 16). -
The Mitotic Checkpoint Kinase NEK2A Regulates Kinetochore Microtubule Attachment Stability
Oncogene (2008) 27, 4107–4114 & 2008 Nature Publishing Group All rights reserved 0950-9232/08 $30.00 www.nature.com/onc ORIGINAL ARTICLE The mitotic checkpoint kinase NEK2A regulates kinetochore microtubule attachment stability JDu1,6, X Cai1,2,6, J Yao1, X Ding2,3,QWu1,2, S Pei1, K Jiang1,2, Y Zhang1, W Wang3, Y Shi1, Y Lai1, J Shen1, M Teng1, H Huang4, Q Fei5, ES Reddy2, J Zhu5, C Jin1 and X Yao1,2 1Hefei National Laboratory for Physical Sciences at Micro-scale, University of Science and Technology of China, Hefei, China; 2Cancer Biology Program, Morehouse School of Medicine, Atlanta, GA, USA; 3Department of Medicine, Beijing University of Chinese Medicine, 4Department of Hematology, the 1st Affiliated Hospital, Zhejiang University, Hongzhou, China and 5Cancer Epigenetics Program, Shanghai Cancer Institute, Shanghai Jiaotong University, Shanghai, China Loss or gain of whole chromosome, the form of Introduction chromosome instability commonly associated with cancers is thought to arise from aberrant chromosome segregation Chromosomal instability (CIN) has been recognized as a during cell division. Chromosome segregation in mitosis is hallmark of human cancer and is caused by continuous orchestrated by the interaction of kinetochores with chromosome missegregation during cell division. Proper spindle microtubules. Our studies showthat NEK2A is a chromosome segregation requires a faithful physical link kinetochore-associated protein kinase essential for faith- between spindle microtubules and centromeric DNA via ful chromosome segregation. However, it was unclear how a protein supercomplex called kinetochore (Cleveland NEK2A ensures accurate chromosome segregation in et al., 2003). In addition to providing a physical link mitosis. Here we show that NEK2A-mediated Hec1 between chromosomes and spindle microtubules, the (highly expressed in cancer) phosphorylation is essential kinetochore has an active function in orchestrating for faithful kinetochore microtubule attachments in chromosome movements through microtubule motors mitosis. -
A Stochastic Model of Kinetochore–Microtubule Attachment Accurately
A stochastic model of kinetochore–microtubule attachment accurately describes fission yeast chromosome segregation Guillaume Gay, Thibault Courthéoux, Céline Reyes, Sylvie Tournier, Yannick Gachet To cite this version: Guillaume Gay, Thibault Courthéoux, Céline Reyes, Sylvie Tournier, Yannick Gachet. A stochas- tic model of kinetochore–microtubule attachment accurately describes fission yeast chromosome segregation. Journal of Cell Biology, Rockefeller University Press, 2012, 196 (6), pp.757-774. 10.1083/jcb.201107124. hal-02380748 HAL Id: hal-02380748 https://hal.archives-ouvertes.fr/hal-02380748 Submitted on 26 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Published March 12, 2012 JCB: Article A stochastic model of kinetochore–microtubule attachment accurately describes fission yeast chromosome segregation Guillaume Gay,1,2 Thibault Courtheoux,1,2 Céline Reyes,1,2 Sylvie Tournier,1,2 and Yannick Gachet1,2 1Laboratoire de biologie cellulaire et moléculaire du contrôle de la proliferation, Université de Toulouse, F-31062 Toulouse, France 2Unité Mixte de Recherche 5088, Centre National de la Recherche Scientifique, F-31062 Toulouse, France n fission yeast, erroneous attachments of spindle micro segregation seen in fission yeast. Prevention of attachment tubules to kinetochores are frequent in early mitosis. -
Cohesin Organizes Chromatin Loops at DNA Replication Factories
Downloaded from genesdev.cshlp.org on September 24, 2021 - Published by Cold Spring Harbor Laboratory Press Cohesin organizes chromatin loops at DNA replication factories Emmanuelle Guillou,1,6,7 Arkaitz Ibarra,1,6 Vincent Coulon,2 Juan Casado-Vela,3,8 Daniel Rico,4 Ignacio Casal,3,9 Etienne Schwob,2 Ana Losada,5,11 and Juan Me´ndez1,10 1DNA Replication Group, Spanish National Cancer Research Centre (CNIO), E-28029 Madrid, Spain; 2Institut de Ge´ne´tique Mole´culaire de Montpellier, CNRS-Universite´ Montpellier 1 et 2, 34293 Montpellier, Cedex 5, France; 3Protein Technology Unit, Biotechnology Programme, Spanish National Cancer Research Centre (CNIO), E-28029 Madrid, Spain; 4Structural Computational Biology Group, Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), E-28029 Madrid, Spain; 5Chromosome Dynamics Group, Molecular Oncology Programme, Spanish National Cancer Research Centre (CNIO), E-28029 Madrid, Spain Genomic DNA is packed in chromatin fibers organized in higher-order structures within the interphase nucleus. One level of organization involves the formation of chromatin loops that may provide a favorable environment to processes such as DNA replication, transcription, and repair. However, little is known about the mechanistic basis of this structuration. Here we demonstrate that cohesin participates in the spatial organization of DNA replication factories in human cells. Cohesin is enriched at replication origins and interacts with prereplication complex proteins. Down-regulation of cohesin slows down S-phase progression by limiting the number of active origins and increasing the length of chromatin loops that correspond with replicon units. These results give a new dimension to the role of cohesin in the architectural organization of interphase chromatin, by showing its participation in DNA replication. -
Chromosome Segregation in Budding Yeast: Sister Chromatid Cohesion and Related Mechanisms
YEASTBOOK Chromosome Segregation in Budding Yeast: Sister Chromatid Cohesion and Related Mechanisms Adele L. Marston The Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, United Kingdom ABSTRACT Studies on budding yeast have exposed the highly conserved mechanisms by which duplicated chromosomes are evenly distributed to daughter cells at the metaphase–anaphase transition. The establishment of proteinaceous bridges between sister chromatids, a function provided by a ring-shaped complex known as cohesin, is central to accurate segregation. It is the destruction of this cohesin that triggers the segregation of chromosomes following their proper attachment to microtubules. Since it is irreversible, this process must be tightly controlled and driven to completion. Furthermore, during meiosis, modifications must be put in place to allow the segregation of maternal and paternal chromosomes in the first division for gamete formation. Here, I review the pioneering work from budding yeast that has led to a molecular understanding of the establishment and destruction of cohesion. TABLE OF CONTENTS Abstract 31 Introduction 32 Building Mitotic Chromosomes 32 Structure and function of the cohesin complex 32 Discovery of cohesion: 32 The cohesin ring: 33 How does cohesin hold chromosomes together?: 34 Loading cohesin onto chromosomes 34 The pattern of cohesin localization on chromosomes: 35 The cohesin loading reaction: 36 Replication–coupled establishment of cohesion 37 Eco1-directed cohesion