A Contemporary Microbially Maintained Subglacial Ferrous

Total Page:16

File Type:pdf, Size:1020Kb

A Contemporary Microbially Maintained Subglacial Ferrous REPORTS 18. S. H. Naik et al., Nat. Immunol. 7, 663 (2006). 25. C. Jakubzick et al., J. Immunol. 180, 3019 Supporting Online Material 19. H. Karsunky, M. Merad, A. Cozzio, I. L. Weissman, (2008). www.sciencemag.org/cgi/content/full/1170540/DC1 M. G. Manz, J. Exp. Med. 198, 305 (2003). 26. The authors thank S. Bhuvanendran for two-photon Materials and Methods 20. C. B. M. Jakubzick, A. J. Bonito, E. L. Kuan, M. Merad, microscopy, K. Velinzon and T. Shengelia for cell sorting, Figs. S1 to S11 G. J. Randolph, J. Exp. Med. 205, 2839 (2008). and R. Steinman and A. Silva for discussions and critical References 21. M. D. Catalina et al., J. Exp. Med. 184, 2341 (1996). reading of the manuscript. K.L. was supported by a Movies S1 to S8 22. R. L. Lindquist et al., Nat. Immunol. 5, 1243 (2004). C. H. Li Memorial Scholarship Award from the Rockefeller 23. J. M. Kim, J. P. Rasmussen, A. Y. Rudensky, Nat. Immunol. University. T.A.S. was supported by the Schering 6 January 2009; accepted 4 March 2009 8, 191 (2007). Foundation. This work was supported in part by Published online 12 March 2009; 24. R. Tussiwand, N. Onai, L. Mazzucchelli, M. G. Manz, grants from the NIH to M.C.N. M.C.N. is an HHMI 10.1126/science.1170540 J. Immunol. 175, 3674 (2005). investigator. Include this information when citing this paper. 34 range = 20.8 to 21.7‰ for SSO4;0.08‰ and ‰ 33 A Contemporary Microbially range = 0.06 to 0.09 for SSO4; n =6)were 2– similar to measurements of seawater SO4 from the past 15 My measured in marine barites (11). Maintained Subglacial 18 In contrast, values of d OSO4 (3.3‰; range = 2.7 to 4.9‰; n =6)wereupto7‰ depleted Ferrous “Ocean” d18 compared with that of seawater OSO4 from T ‰ 1 1 2 3 4 marine barites over the Pliocene [10.4 1.6 Jill A. Mikucki, * Ann Pearson, David T. Johnston, Alexandra V. Turchyn, James Farquhar, d34 d18 1 5 6 7 (12)]. Because values of both Sand Oin Daniel P. Schrag, Ariel D. Anbar, John C. Priscu, Peter A. Lee 2– SO4 are influenced independently by microbial sulfur metabolism, including sulfate reduction, An active microbial assemblage cycles sulfur in a sulfate-rich, ancient marine brine beneath Taylor disproportionation, and reoxidation reactions Glacier, an outlet glacier of the East Antarctic Ice Sheet, with Fe(III) serving as the terminal electron (13, 14), we expect that both oxygen and sulfur acceptor. Isotopic measurements of sulfate, water, carbonate, and ferrous iron and functional isotopes would be affected. For example, dissim- ′ gene analyses of adenosine 5 -phosphosulfate reductase imply that a microbial consortium facilitates ilatory sulfate reduction to sulfide would cause a catalytic sulfur cycle. These metabolic pathways result from a limited organic carbon supply 34 2– on April 30, 2009 preferential enrichment of S (SO4 → H2S, because of the absence of contemporary photosynthesis, yielding a subglacial ferrous brine that is fractionation factor (e) = 20 to 40‰ for natural anoxic but not sulfidic. Coupled biogeochemical processes below the glacier enable subglacial populations) (15) because 34S-depleted S2– is microbes to grow in extended isolation, demonstrating how analogous organic-starved systems, such sequestered in iron sulfides. This would increase as Neoproterozoic oceans, accumulated Fe(II) despite the presence of an active sulfur cycle. 34 the d SSO4 value of the remaining sulfate pool. Our isotope data indicate that incorporation of ubglacial environments represent a largely present is anoxic and highly ferrous and the pH is 18O-depleted brine water oxygen into sulfate has unexplored component of Earth’sbio- circumneutral (Table 1), activity and DNA se- occurred (Fig. 1B and table S3). During glacial sphere (1). In the McMurdo Dry Valleys, quence data reveal that it supports a metabolically advancement, meltwater mixing with the remain- S 18 www.sciencemag.org Antarctica, an iron-rich subglacial outflow (Blood active, largely marine microbial assemblage (7). ing seawater decreased the d O value of the Falls) flows from the Taylor Glacier (Fig. 1A), Taylor Glacier is frozen to its bed, and brine from a marine value to its current com- 18 providing unique access to a subglacial ecosys- surface-derived water does not penetrate to the position (d H2OBrine = –39.5‰; Table 1). The 18 tem. The likely fluid source to Blood Falls is a base (8). Poorly understood hydrologic controls depleted value of d OSO4 cannot be explained pool of marine brine of unknown depth trapped result in episodic release of brine. The data in this by abiotic oxygen isotope exchange between 2– underneath the glacier ~4 km from the glacier study are from one of these active discharge SO4 and water. Such equilibration would take snout where the overlying ice is ~400 m thick (2). events. Salts and the iron mineral goethite rapidly tens of millions of years at subglacial temper- Pliocene surface uplift of the Taylor Valley floor, precipitate upon contact of the outflow with the atures and pH (16) (Table 1). However, oxygen Downloaded from 2– and the associated recession of the Ross Sea oxidizing atmosphere (5). Although regelation as isotope exchange between sulfite (SO3 )and Embayment, isolated this pocket of brine (3). the glacier slides over the bedrock and brine may water occurs rapidly [50% exchange in <5 min 2– 2– Before isolation from direct contact with the at- add trace amounts of meteoric gases including O2 (17)], and the reduction of SO4 to SO3 is mosphere, the brine was cryoconcentrated (4, 5), (9), multiple geochemical measurements reveal biologically mediated (7). Complete equilibration – 2– 2– resulting in hypersalinity (~1375 mM Cl ). This no quantitatively significant contributions. Radio- of SO4 via cycling through SO3 and exchang- brine has been isolated for at least 1.5 million carbon data confirm that dissolved inorganic ing all oxygen atoms with water would result in a 14 years (My), when the Taylor Glacier last ad- carbon (DIC) is old [D CDIC = –993 T 1(SE) 30.9‰ offset from brine water or a value for 18 vanced over the area (6). Although the brine at per mil (‰)(10)]. Presumably, interactions with d OSO4 of –8.6‰ (Fig.1B).Thisoffsetrepre- air at the point of outflow collection are sents the temperature-adjusted equilibrium frac- 14 18 2– 1 responsible for the small amount of CDIC in tionation factor of OinSO3 relative to brine Department of Earth and Planetary Sciences, Harvard Uni- 14 versity, Cambridge, MA 02138 USA. 2Department of Or- our samples ( C-free would be –1000‰). No H2O(e =30.9‰ at –5.2°C). Given the measured 18 ganismic and Evolutionary Biology, Harvard University, dissolved O2 was detected in the brine [reduction values of d OSO4 (2.7‰ to 4.9‰), isotopic mass Cambridge MA, 02138 USA. 3Department of Earth Sciences, 2– 4 potential (Eh) = 90 mV], and iron was 97% Fe(II), balance requires that 30 to 40% of the SO4 pool University of Cambridge, Cambridge CB2 3EQ, UK. Depart- indicating that inputs from ice-bound atmospher- has exchanged its O atoms with water, likely ment of Geology, University of Maryland, College Park, MD 2– 20742, USA. 5School of Earth and Space Exploration and ic O2 are minimal. through equilibration with SO3 . Department of Chemistry and Biochemistry, Arizona State Heterotrophic activity was measured by using Characterization of the Blood Falls microbial University, Tempe, AZ 85287, USA. 6Department of Land 3H-thymidine incorporation (Table 1) (10). Al- assemblage has revealed taxa that could partici- Resources and Environmental Sciences, Montana State 7 though the most abundant electron acceptor in pate in active sulfur cycling, including autotrophs University, Bozeman, MT 59717, USA. Hollings Marine Lab- 2– oratory, College of Charleston, Charleston, SC 29412, USA. the brine is SO4 , isotope data suggest that and heterotrophs (table S1). Sulfate is biological- 2– 2– *Present address: Department of Earth Sciences, Dartmouth SO4 is not terminally reduced in quantities lyreducedtoSO3 by using (phospho-)adenosine College,Hanover,NH03755,USA.Towhomcorrespondence sufficient to affect isotopes of sulfur. Values of 5′-phosphosulfate–reductase by assimilatory [3′- 34 33 should be addressed. E-mail: [email protected] d SSO4 and D SSO4 in the brine (21.0‰ and phosphoadenosine 5′-phosphosulfate (PAPS)] www.sciencemag.org SCIENCE VOL 324 17 APRIL 2009 397 REPORTS Fig. 1. (A)BloodFallsatthesnoutoftheTaylorGlacier(77°72′S 162°27′E). (Inset) Conceptual model for the possible modes of redox cycling of iron, sulfur, and organic material in the Blood Falls brine based on data from this study. Red arrows indicate assimilatory pathways (via the cell), and blue arrows indicate an alternate pathway via catalytic sulfur cycling mediated by APS reductase. (B)Valuesof 18 18 on April 30, 2009 d OSO4 relative to dH2 O, given different reaction scenarios. Sulfate and water will have equilibrated by no more than 1‰ within 50 My, therefore no net 18 18 2– 2– change would be expected in the d OSO4 of a seawater brine mixed with O-depleted glacier water (gray diamond). Where SO4 reduction occurs, SO3 18 equilibrates with the in situ water, e =25to30.5‰,resultingind OSO4 predicted by the shaded gray line (15, 24). In marine sediments (32)(blackdiamond), 2– 2– 2– complete equilibration of SO3 with in situ water is observed, indicating quantitative reduction of SO4 .IfSO4 reduction occurred to completion in Blood 18 Falls, values of d OSO4 between –8and–10‰ (25 to 30.5‰ isotopically heavier than the in situ water) would be expected. Because the data (3.3‰,black 2– circle) plot above this line of complete equilibration, only a portion (30 to 40%) of the total SO4 pool has equilibrated.
Recommended publications
  • Management Plan For
    Measure 8 (2013) Annex Management Plan for Antarctic Specially Protected Area (ASPA) No.138 Linnaeus Terrace, Asgard Range, Victoria Land Introduction Linnaeus Terrace is an elevated bench of weathered Beacon Sandstone located at the western end of the Asgard Range, 1.5km north of Oliver Peak, at 161° 05.0' E 77° 35.8' S,. The terrace is ~ 1.5 km in length by ~1 km in width at an elevation of about 1600m. Linnaeus Terrace is one of the richest known localities for the cryptoendolithic communities that colonize the Beacon Sandstone. The sandstones also exhibit rare physical and biological weathering structures, as well as trace fossils. The excellent examples of cryptoendolithic communities are of outstanding scientific value, and are the subject of some of the most detailed Antarctic cryptoendolithic descriptions. The site is vulnerable to disturbance by trampling and sampling, and is sensitive to the importation of non-native plant, animal or microbial species and requires long-term special protection. Linnaeus Terrace was originally designated as Site of Special Scientific Interest (SSSI) No. 19 through Recommendation XIII-8 (1985) after a proposal by the United States of America. The SSSI expiry date was extended by Resolution 7 (1995), and the Management Plan was adopted in Annex V format through Measure 1 (1996). The site was renamed and renumbered as ASPA No 138 by Decision 1 (2002). The Management Plan was updated through Measure 10 (2008) to include additional provisions to reduce the risk of non-native species introductions into the Area. The Area is situated in Environment S – McMurdo – South Victoria Land Geologic based on the Environmental Domains Analysis for Antarctica and in Region 9 – South Victoria Land based on the Antarctic Conservation Biogeographic Regions.
    [Show full text]
  • Algal Toxic Compounds and Their Aeroterrestrial, Airborne and Other Extremophilic Producers with Attention to Soil and Plant Contamination: a Review
    toxins Review Algal Toxic Compounds and Their Aeroterrestrial, Airborne and other Extremophilic Producers with Attention to Soil and Plant Contamination: A Review Georg G¨аrtner 1, Maya Stoyneva-G¨аrtner 2 and Blagoy Uzunov 2,* 1 Institut für Botanik der Universität Innsbruck, Sternwartestrasse 15, 6020 Innsbruck, Austria; [email protected] 2 Department of Botany, Faculty of Biology, Sofia University “St. Kliment Ohridski”, 8 blvd. Dragan Tsankov, 1164 Sofia, Bulgaria; mstoyneva@uni-sofia.bg * Correspondence: buzunov@uni-sofia.bg Abstract: The review summarizes the available knowledge on toxins and their producers from rather disparate algal assemblages of aeroterrestrial, airborne and other versatile extreme environments (hot springs, deserts, ice, snow, caves, etc.) and on phycotoxins as contaminants of emergent concern in soil and plants. There is a growing body of evidence that algal toxins and their producers occur in all general types of extreme habitats, and cyanobacteria/cyanoprokaryotes dominate in most of them. Altogether, 55 toxigenic algal genera (47 cyanoprokaryotes) were enlisted, and our analysis showed that besides the “standard” toxins, routinely known from different waterbodies (microcystins, nodularins, anatoxins, saxitoxins, cylindrospermopsins, BMAA, etc.), they can produce some specific toxic compounds. Whether the toxic biomolecules are related with the harsh conditions on which algae have to thrive and what is their functional role may be answered by future studies. Therefore, we outline the gaps in knowledge and provide ideas for further research, considering, from one side, Citation: G¨аrtner, G.; the health risk from phycotoxins on the background of the global warming and eutrophication and, ¨а Stoyneva-G rtner, M.; Uzunov, B.
    [Show full text]
  • Boletín Antártico Chileno, Edición Especial
    EL CONTINENTE DONDE EMPIEZA EL FUTURO Índice DIRECTOR Y REPRESENTANTE LEGAL Presentación José Retamales Espinoza 5 Prólogo 7 EDITOR Reiner Canales La relación entre Sudamérica y la Antártica 11 (E-mail: [email protected]) El pasado de la Antártica… ¿una incógnita develada? 13 COMITÉ EDITORIAL Marcelo Leppe Cartes Edgardo Vega Separación de la fauna marina antártica y sudamericana desde una aproximación molecular 21 Marcelo González Elie Poulin, Claudio González-Wevar, Mathias Hüne, Angie Díaz Marcelo Leppe Conexiones geológicas entre Sudamérica y Antártica 27 Francisco Hervé Allamand DIRECCIÓN DE ARTE Pablo Ruiz Teneb Adaptaciones al Medio Antártico y Biorrecursos 33 El interés por esudiar la biodiversidad microbiológica en la Antártica 35 DISEÑO / DIAGRAMACIÓN Jenny M. Blamey Oscar Giordano / Menssage Producciones El capital celular y molecular para vivir a temperaturas bajo cero en aguas antárticas 39 Víctor Bugueño / Menssage Producciones Marcelo González Aravena Las esrategias de las plantas antárticas para sobrevivir en ambientes extremos y su rol como biorrecursos 45 PORTADA Marco A. Molina-Montenegro, Ian S. Acuña-Rodríguez, Jorge Gallardo-Cerda, Rasme Hereme y Crisian Torres-Díaz EL CONTINENTE Arnaldo Gómez / Menssage Producciones DONDE EMPIEZA EL FUTURO Biodiversidad 53 A más de medio siglo IMPRESIÓN de la fundación del Menssage Producciones Las aves marinas de la península Antártica 55 Instituto Antártico Chileno Santiago de Chile Javier A. Arata El desafío de esudiar y comprender la biodiversidad de los mamíferos marinos antárticos 59 Elías Barticevic Cornejo y FOTOGRAFÍA Anelio Aguayo Lobo Óscar Barrientos Bradasic (Eds.) La desconocida vida y diversidad de los invertebrados terresres antárticos 67 Agradecemos a los autores citados en los créditos Daniel González Acuña fotográficos por su aporte en imágenes al regisro Autores Caracterísicas de la fauna que habita los fondos coseros profundos de la Antártica 75 hisórico de la ciencia antártica nacional.
    [Show full text]
  • MICROBIAL LIFE in BLOOD FALLS: an ANCIENT ANTARCTIC ECOSYSTEM. J.A. Mikucki1 and J.C.Priscu1 1 Montana State University, Dept. O
    Second Conference on Early Mars (2004) 8023.pdf MICROBIAL LIFE IN BLOOD FALLS: AN ANCIENT ANTARCTIC ECOSYSTEM. J.A. Mikucki1 and J.C.Priscu1 1 Montana State University, Dept. of Land Resources and Environmental Sciences, Bozeman, MT, USA. email: [email protected] Blood Falls is a unique subglacial discharge at the terminus of Taylor Glacier in the McMurdo Dry Valleys of Antarctica. Ice penetrating radar data and geochemical analyses of Taylor’s subglacial outflow strongly implicate the presence of ancient entrapped marine waters below the glacier [1]. These waters are thought to originate from the Pliocene Epoch (~5Mya) when the dry valleys were fjord-like. Blood Falls (Figure 1), an iron-rich salt cone, accumulates where subglacial flow meets the ice surface at the snout of Taylor Glacier. The episodic release of subglacial water provides a sample of potentially ancient seawater and of the subglacial ecosystem lying beneath Taylor Glacier. Biogeochemical measurements, culture-based techniques, and molecular analysis (based on 16S rDNA sequences), have been used to characterize microbes and chemistry associated with outflow waters. In the absence of direct samples from below Taylor Glacier, these data allow us to infer the composition of this microbial subglacial niche. Iron-reducing Figure 1. Blood Falls, Taylor Glacier, Antarctica. January, 2004. isolates, clone libraries dominated by 16S rDNA sequences with high identity to Thiomicrospira sp., and increased 14C-bicarbonate incorporation in samples amended with reduced sulfur provides evidence for lifestyles that derive energy from iron and sulfur compounds. Based on the prevalence of cold environments in our solar system, the search for extant extraterrestrial life will focus largely on icy habitats.
    [Show full text]
  • Deep Groundwater and Potential Subsurface Habitats Beneath an Antarctic Dry Valley
    University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Microbiology Publications and Other Works Microbiology 4-28-2015 Deep groundwater and potential subsurface habitats beneath an Antarctic dry valley Jill A. Mikucki University of Tennessee, Knoxville, [email protected] E. Auken Aarhus University S. Tulaczyk University of California, Santa Cruz, [email protected] R. A. Virginia Dartmouth College C. Schamper Sorbonne Universités See next page for additional authors Follow this and additional works at: https://trace.tennessee.edu/utk_micrpubs Part of the Microbiology Commons Recommended Citation Mikucki, J. A., Auken, E., Tulaczyk, S., Virginia, R. A., Schamper, C., Sørensen, K. I., ... & Foley, N. (2015). Deep groundwater and potential subsurface habitats beneath an Antarctic dry valley. Nature communications, 6. Doi: 10.1038/ncomms7831 This Article is brought to you for free and open access by the Microbiology at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Microbiology Publications and Other Works by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. Authors Jill A. Mikucki, E. Auken, S. Tulaczyk, R. A. Virginia, C. Schamper, K. I. Sørensen, P. T. Doran, H. Dugan, and N. Foley This article is available at TRACE: Tennessee Research and Creative Exchange: https://trace.tennessee.edu/ utk_micrpubs/79 ARTICLE Received 21 May 2014 | Accepted 2 Mar 2015 | Published 28 Apr 2015 DOI: 10.1038/ncomms7831 OPEN Deep groundwater and potential subsurface habitats beneath an Antarctic dry valley J.A. Mikucki1, E. Auken2, S. Tulaczyk3, R.A. Virginia4, C. Schamper5, K.I. Sørensen2, P.T.
    [Show full text]
  • Planktonic Microbial Community Composition Across Steep Physical
    Geobiology (2006), 4, 53–67 PlanktonicBlackwellMicrobialORIGINAL Publishingdiversity ARTICLE in Ltdpermanently ice-covered Lake Bonney microbial community composition across steep physical/chemical gradients in permanently ice-covered Lake Bonney, Antarctica R. E. GLATZ,1 P. W. LEPP,2 B. B. WARD3 AND C. A. FRANCIS1 1Department of Geological and Environmental Sciences, Stanford University, Stanford, CA 94305, USA 2Department of Biology, Minot State University, Minot, ND 58707, USA 3Department of Geosciences, Princeton University, Princeton, NJ 08544, USA ABSTRACT Lake Bonney is a chemically stratified, permanently ice-covered Antarctic lake that is unusual because anoma- lous nutrient concentrations in the east lobe suggest that denitrification occurs in the deep suboxic waters of the west lobe but not the east lobe, resulting in high concentrations of nitrate and nitrite below the east lobe chemocline. Environmental factors that usually control denitrification rates (e.g. organic carbon, nitrate, oxygen) do not appear to explain the nitrate distribution in the east lobe, suggesting that other factors (e.g. trace metals, salts, microbial community structure, etc.) may be involved. In order to explore the potential importance of microbial community composition, samples collected from multiple depths in both lobes were compared on the basis of 16S rRNA gene diversity. 16S rRNA polymerase chain reaction (PCR) clone libraries generated from five depths were subjected to restriction fragment length polymorphism (RFLP), rarefaction, statistical and phyloge- netic analyses. Bacterial and archaeal 16S rRNA gene sequences were determined for clones corresponding to unique RFLP patterns. The bacterial community below the chemocline (at 25 m) in the east lobe was the least diverse of the five depths analysed and was compositionally distinct from the communities of the overlying waters.
    [Show full text]
  • Deep Groundwater and Potential Subsurface Habitats Beneath an Antarctic Dry Valley
    ARTICLE Received 21 May 2014 | Accepted 2 Mar 2015 | Published 28 Apr 2015 DOI: 10.1038/ncomms7831 OPEN Deep groundwater and potential subsurface habitats beneath an Antarctic dry valley J.A. Mikucki1, E. Auken2, S. Tulaczyk3, R.A. Virginia4, C. Schamper5, K.I. Sørensen2, P.T. Doran6, H. Dugan7 & N. Foley3 The occurrence of groundwater in Antarctica, particularly in the ice-free regions and along the coastal margins is poorly understood. Here we use an airborne transient electromagnetic (AEM) sensor to produce extensive imagery of resistivity beneath Taylor Valley. Regional- scale zones of low subsurface resistivity were detected that are inconsistent with the high resistivity of glacier ice or dry permafrost in this region. We interpret these results as an indication that liquid, with sufficiently high solute content, exists at temperatures well below freezing and considered within the range suitable for microbial life. These inferred brines are widespread within permafrost and extend below glaciers and lakes. One system emanates from below Taylor Glacier into Lake Bonney and a second system connects the ocean with the eastern 18 km of the valley. A connection between these two basins was not detected to the depth limitation of the AEM survey (B350 m). 1 Department of Microbiology, University of Tennessee, Knoxville, Tennessee 37996, USA. 2 Department of Geosciences, Aarhus University, Aarhus 8000, Denmark. 3 Department of Earth and Planetary Sciences, University of California, Santa Cruz, California 95064, USA. 4 Environmental Studies Program, Dartmouth College, Hanover, New Hampshire 03755, USA. 5 Sorbonne Universite´s, UPMC Univ Paris 06, CNRS, EPHE, UMR 7619 Metis, 4 place Jussieu, Paris 75252, France.
    [Show full text]
  • Microbial Diversity, Activity, and Ecology of a Hypersaline High Arctic Spring System
    Microbial Diversity, Activity, and Ecology of a Hypersaline High Arctic Spring System Chih-Ying Lay Department of Natural Resource Sciences McGill University, Montreal August, 2013 A thesis submitted to McGill University in partial fulfillment of the requirements of the degree of PhD. ©2013 Although we have no rational grounds for believing in an objective reality, we also have no choice but to act as if it is true. - David Hume 2 ACKNOWLEDGEMENTS First of all, I would like to thank Dr. Lyle G. Whyte, my supervisor, who let me study in his lab and supported me with his resources to complete my PhD research. From his supervision, I acquired a lot of knowledge of experiment design, planning field trips, interpreting research results, and building academic networks. His enthusiasm on unique microbiology topics and desires of using newly-developed technologies always encouraged me to face all the trendiest topics in the frontline of environmental microbiology. He let me to attend the unforgettable field trip to the Canadian High Arctic to perform field works. Without his help, I will not finish this thesis. I also would like to thank all the support from Dr. Charles Greer, Dr. Brian Driscoll, Dr. Donald Niven, and Dr. Sébastien Faucher. They always kindly gave me many useful and professional advices to overcome research problems. I would like to thank Dr. Thomas Niederberger, Dr. Nadia Mykytczuk and Dr. Étienne Yergeau. When I had in situ questions or problems for my research, they always offered me the most immediate helps. My lab mates, Guillaume Lamarche-Gagnon, Sara Sheibani, Roland Wilhelm, Kris Radtke, Jen Allan, Jackie Goordial, Diana Popa, Sara Klemm, Dr.
    [Show full text]
  • A Technology for Retrieving Specific DNA Sequences from Complex Mixtures Kelley Gwin Nunez Louisiana State University and Agricultural and Mechanical College
    Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2015 Selective Enrichment Through Capture (SEC): A Technology for Retrieving Specific DNA Sequences from Complex Mixtures Kelley Gwin Nunez Louisiana State University and Agricultural and Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Recommended Citation Nunez, Kelley Gwin, "Selective Enrichment Through Capture (SEC): A Technology for Retrieving Specific DNA eS quences from Complex Mixtures" (2015). LSU Doctoral Dissertations. 514. https://digitalcommons.lsu.edu/gradschool_dissertations/514 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. SELECTIVE ENRICHMENT THROUGH CAPTURE (SEC): A TECHNOLOGY FOR RETREIVING SPECIFIC DNA SEQUENCES FROM COMPLEX MIXTURES A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctorate of Philosophy in The Department of Biological Sciences by Kelley G. Núñez B.S., Louisiana State University, 2009 December 2015 ACKNOWLEDGEMENTS I would first like to thank my advisor, Dr. John R. Battista who has guided me in becoming a well-rounded scientist. You have been an excellent mentor and have always been available for discussions. I have learned an enormous amount over the last five years about what it takes to be a scientist and I am extremely grateful for your patience, guidance, and freedom to pursue a wide variety of projects.
    [Show full text]
  • View and Research Objectives
    University of Alberta Carotenoid diversity in novel Hymenobacter strains isolated from Victoria Upper Glacier, Antarctica, and implications for the evolution of microbial carotenoid biosynthesis by Jonathan Lee Klassen A thesis submitted to the Faculty of Graduate Studies and Research in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Microbiology and Cell Biotechnology Department of Biological Sciences ©Jonathan Lee Klassen Fall 2009 Edmonton, Alberta Permission is hereby granted to the University of Alberta Libraries to reproduce single copies of this thesis and to lend or sell such copies for private, scholarly or scientific research purposes only. Where the thesis is converted to, or otherwise made available in digital form, the University of Alberta will advise potential users of the thesis of these terms. The author reserves all other publication and other rights in association with the copyright in the thesis and, except as herein before provided, neither the thesis nor any substantial portion thereof may be printed or otherwise reproduced in any material form whatsoever without the author's prior written permission. Examining Committee Dr. Julia Foght, Department of Biological Science Dr. Phillip Fedorak, Department of Biological Sciences Dr. Brenda Leskiw, Department of Biological Sciences Dr. David Bressler, Department of Agriculture, Food and Nutritional Science Dr. Jeffrey Lawrence, Department of Biological Sciences, University of Pittsburgh Abstract Many diverse microbes have been detected in or isolated from glaciers, including novel taxa exhibiting previously unrecognized physiological properties with significant biotechnological potential. Of 29 unique phylotypes isolated from Victoria Upper Glacier, Antarctica (VUG), 12 were related to the poorly studied bacterial genus Hymenobacter including several only distantly related to previously described taxa.
    [Show full text]
  • 2015 ABRF Metagenomics Research Group
    2015 ABRF Metagenomics Research Group The Extreme Microbiome Project (XMP) and Development of New Standards for Metagenomics and Microbiome Applications Scott Tighe University of Vermont Overview • About the MGRG • Mission Statement • Membership • Collaborators and Contributors • Current Projects • Development of Microbial Reference Standards • Development of a multi-lytic enzyme mix (with Sigma) • Development and evaluation of metagenomics preservatives • The Extreme Microbiome Study (XMP) • Study Sites • Methods • Bioinformatics • Data About the MGRG • New research group proposed and approved in March 2014 • Started recruiting members at the general meeting 2014 in Albq. • First was Kelley Thomas • Includes an Analytics group, Bioinformatics, and “Earth sciences” • Microbiologists, geneticists, computational biologist, geochemists, oceanographers, ecologists. • Focus on developing reference standards and reagents which are currently lacking in microbiome studies. • Development of standardized techniques and protocols • Working with corporates partners for developing new kits and reagents • Study extreme and unique environments with whole genome shotgun sequencing for metagenomics and metatranscriptomic approaches. Mission Statement The goals of the Metagenomic Research Group is to evaluate, study, and refine methodologies related to any aspect of metagenomics and microbiome studies. This includes study designs, controls, detection methods, and bioinformatics pipelines and software. The overall intent of ABRF MGRG is to assist in the
    [Show full text]
  • Bacterial Diversity Associated with Blood Falls, a Subglacial Outflow from the Taylor Glacier, Antarcticaᰔ Jill A
    Applied and Environmental Microbiology -- About the Cover (August 2007, 73, (15)) Page 1 of 1 Institution: MONTANA STATE UNIV AT BOZEMAN Sign In as Member About the Cover Cover photograph (Copyright © 2007, American Society for Microbiology. All Rights Reserved.): Subglacial outflow from the Taylor Glacier in the McMurdo Dry Valleys, Antarctica. Iron and salt precipitates form where subglacial brine flows from the Taylor Glacier, lending a bright red color to the glacier snout, which is commonly referred to as Blood Falls. The episodic release of subglacial brine at Blood Falls provides a sample of what is believed to be ancient seawater originating from the Pliocene Epoch, which is now trapped below the glacier. The microbial diversity associated with Blood Falls reflects this marine origin. Photo by Benjamin Urmston. (See related article in June 2007: volume 73, issue 12, page 4029.) [Table of Contents] J. Bacteriol. Microbiol. Mol. Biol. Rev. Eukaryot. Cell All ASM Journals Copyright © 2007 by the American Society for Microbiology. All rights reserved. http://aem.asm.org/content/vol73/issue15/cover.shtml 02-Aug-07 APPLIED AND ENVIRONMENTAL MICROBIOLOGY, June 2007, p. 4029–4039 Vol. 73, No. 12 0099-2240/07/$08.00ϩ0 doi:10.1128/AEM.01396-06 Copyright © 2007, American Society for Microbiology. All Rights Reserved. Bacterial Diversity Associated with Blood Falls, a Subglacial Outflow from the Taylor Glacier, Antarcticaᰔ Jill A. Mikucki* and John C. Priscu Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, Montana 59717 Received 16 June 2006/Accepted 13 April 2007 Blood Falls is the surface manifestation of brine released from below the Taylor Glacier, McMurdo Dry Valleys, Antarctica.
    [Show full text]