Antifungal Guideline for Invasive Fungal Infections in Adults
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Mycology Proficiency Testing Program
Mycology Proficiency Testing Program Test Event Critique May 2013 Mycology Laboratory Table of Contents Mycology Laboratory 2 Mycology Proficiency Testing Program 3 Test Specimens & Grading Policy 5 Test Analyte Master Lists 7 Performance Summary 9 Commercial Device Usage Statistics 10 Yeast Descriptions 11 Y-1 Candida kefyr 11 Y-2 Candida tropicalis 14 Y-3 Candida guilliermondii 17 Y-4 Candida krusei 20 Y-5 Candida lusitaniae 23 Antifungal Susceptibility Testing - Yeast 26 Antifungal Susceptibility Testing - Mold (Educational) 28 1 Mycology Laboratory Mycology Laboratory at the Wadsworth Center, New York State Department of Health (NYSDOH) is a reference diagnostic laboratory for the fungal diseases. The laboratory services include testing for the dimorphic pathogenic fungi, unusual molds and yeasts pathogens, antifungal susceptibility testing including tests with research protocols, molecular tests including rapid identification and strain typing, outbreak and pseudo-outbreak investigations, laboratory contamination and accident investigations and related environmental surveys. The Fungal Culture Collection of the Mycology Laboratory is an important resource for high quality cultures used in the proficiency-testing program and for the in-house development and standardization of new diagnostic tests. Mycology Proficiency Testing Program provides technical expertise to NYSDOH Clinical Laboratory Evaluation Program (CLEP). The program is responsible for conducting the Clinical Laboratory Improvement Amendments (CLIA)-compliant Proficiency Testing (Mycology) for clinical laboratories in New York State. All analytes for these test events are prepared and standardized internally. The program also provides continuing educational activities in the form of detailed critiques of test events, workshops and occasional one-on-one training of laboratory professionals. Mycology Laboratory Staff and Contact Details Name Responsibility Phone Email Director Dr. -
Mycological Evaluation of Smoked-Dried Fish Sold at Maiduguri Metropolis, Nigeria: Preliminary Findings and Potential Health Implications
Original Article / Orijinal Makale doi: 10.5505/eurjhs.2016.69885 Eur J Health Sci 2016;2(1):5-10 Mycological Evaluation of Smoked-Dried Fish Sold at Maiduguri Metropolis, Nigeria: Preliminary Findings and Potential Health Implications Nijerya’da Maiduguri Metropolis’te satılan tütsülenmiş balıkların mikolojik değerlendirilmesi: Ön bulgular ve sağlığa potansiyel etkileri 1 2 3 Fatima Muhammad Sani , Idris Abdullahi Nasir , Gloria Torhile 1Department of Medical Laboratory Science, College of Medical Sciences University of Maiduguri, Borno State, Nigeria 2Department of Medical Microbiology, University of Abuja Teaching Hospital, Gwagwalada, FCT Abuja, Nigeria 3Department of Medical Microbiology, Federal Teaching Hospital Gombe, Gombe, Nigeria ABSTRACT Background: Smoked-dried fish are largely consumed as source of nutrient by man. It has been established that fish food can act as vehicle for transmission of some mycological pathogens especially in immunocompromised individuals. Methods: Between 7th October 2011 and 5th January 2012, a total of 100 different species of smoke-dried fish comprising 20 each of Cat fish (Arius hendeloti), Tilapia (Oreochromis niloticus), Stock fish (Gadus morhua), Mud fish (Neoxhanna galaxiidae) and Bonga fish (Enthalmosa fimbriota) were processed and investigated for possible fungal contamination based on culture isolation using Sabouraud dextrose agar (SDA) and microscopy. Results: Organisms isolated and identified in pure culture were Mucor spp. (36%), Aspergillus niger (35%), Aspergillus fumigatus (6%), Candida tropicalis (3%), Candida stellatoidea (2%), Microsporum audunii (2%), Penicillium spp. (2%), and Trichophyton rubrum (1%) while Mucor spp. and Aspergillus niger (4%); Mucor spp. and Candida tropicalis (3%); Aspergillus fumigatus and Mucor spp. (1%); Aspergillus niger, Candida spp. and Mucor spp. (1%) were isolated in mixed culture. -
Council of State and Territorial Epidemiologists
Appendix 1 Identification of Candida auris (as of August 20, 2018). This appendix will be updated as new information about C. auris identification becomes available. Some yeast identification methods are unable to differentiate C. auris from other yeast species. C. auris can be misidentified as a number of different organisms when using traditional biochemical methods for yeast identification such as VITEK 2 YST, API 20C, BD Phoenix yeast identification system, and MicroScan. The most common misidentification of C. auris is Candida haemulonii. C. haemulonii have been less commonly observed to cause invasive infections. Therefore, C. auris should be suspected when C. haemulonii is identified on culture of blood or other normally sterile site unless the method used can reliably detect C. auris. Candida isolates from the urine and respiratory tract ultimately confirmed as C. auris have been initially identified as C. haemulonii; less data are available about the ability of C. haemulonii to grow in urine or the respiratory tract, although true C. haemulonii infections in general appear to be rare in the United States. The table below summarizes common misidentifications based on the yeast identification method used. If any of the species listed below are identified using the specified identification method, or if species identity cannot be determined by any method, further characterization using appropriate methodology should be sought. Common misidentifications for C. auris by yeast identification method Identification Method Organism C. auris can be misidentified as No misidentifications of Candida auris. Bruker Bruker MALDI Biotyper (FDA database) MALDI-TOF is able to accurately identify C. auris bioMérieux VITEK MS (IVD/RUO database) Candida haemulonii Candida haemulonii VITEK 2 YST (Ver. -
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Current Medical Mycology 2019, 5(4): 26-34 Species distribution and susceptibility profiles of Candida species isolated from vulvovaginal candidiasis, emergence of C. lusitaniae Seyed Ebrahim Hashemi1, Tahereh Shokohi2, 3*, Mahdi Abastabar2, 3, Narges Aslani4, Mahbobeh Ghadamzadeh5, Iman Haghani3 1 Student Research Committee, School of Medicine, Mazandaran University of Medical Sciences, Sari, Iran 2 Invasive Fungi Research Centre (IFRC), Mazandaran University of Medical Sciences, Sari, Iran 3 Department of Medical Mycology, School of Medicine, Mazandaran University of Medical Sciences, Sari, Iran 4 Infectious and Tropical Diseases Research Center, Tabriz University of Medical Sciences, Tabriz, Iran 5 Gynecology and Obstetrics Department of Hazrat-e- Zainab Hospital, Babolsar, Iran Article Info A B S T R A C T Article type: Background and Purpose: The aim of the current study was to investigate the Original article epidemiology of vulvovaginal candidiasis (VVC) and recurrent VVC (RVVC), as well as the antifungal susceptibility patterns of Candida species isolates. Materials and Methods: A cross-sectional study was carried out on 260 women suspected of VVC from February 2017 to January 2018. In order to identify Candida Article History: species isolated from the genital tracts, the isolates were subjected to polymerase chain Received: 02 August 2019 reaction restriction fragment length polymorphism (PCR-RFLP) using enzymes Msp I Revised: 20 October 2019 and sequencing. Moreover, antifungal susceptibility testing was performed according to Accepted: 10 November 2019 the Clinical and Laboratory Standards Institute guidelines (M27-A3). Results: Out of 250 subjects, 75 (28.8%) patients were affected by VVC, out of whom 15 (20%) cases had RVVC. Among the Candida species, C. -
The Numerical Taxonomy of Pathogenic Species of Candida
University of Wollongong Research Online University of Wollongong Thesis Collection 1954-2016 University of Wollongong Thesis Collections 1985 The numerical taxonomy of pathogenic species of candida William James Crozier University of Wollongong Follow this and additional works at: https://ro.uow.edu.au/theses University of Wollongong Copyright Warning You may print or download ONE copy of this document for the purpose of your own research or study. The University does not authorise you to copy, communicate or otherwise make available electronically to any other person any copyright material contained on this site. You are reminded of the following: This work is copyright. Apart from any use permitted under the Copyright Act 1968, no part of this work may be reproduced by any process, nor may any other exclusive right be exercised, without the permission of the author. Copyright owners are entitled to take legal action against persons who infringe their copyright. A reproduction of material that is protected by copyright may be a copyright infringement. A court may impose penalties and award damages in relation to offences and infringements relating to copyright material. Higher penalties may apply, and higher damages may be awarded, for offences and infringements involving the conversion of material into digital or electronic form. Unless otherwise indicated, the views expressed in this thesis are those of the author and do not necessarily represent the views of the University of Wollongong. Recommended Citation Crozier, William James, The numerical taxonomy of pathogenic species of candida, Master of Science thesis, Department of Biology, University of Wollongong, 1985. https://ro.uow.edu.au/theses/2618 Research Online is the open access institutional repository for the University of Wollongong. -
Insights Into Candida Tropicalis Nosocomial Infections and Virulence Factors
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Universidade do Minho: RepositoriUM Eur J Clin Microbiol Infect Dis (2012) 31:1399–1412 DOI 10.1007/s10096-011-1455-z ARTICLE Insights into Candida tropicalis nosocomial infections and virulence factors M. Negri & S. Silva & M. Henriques & R. Oliveira Received: 14 September 2011 /Accepted: 8 October 2011 /Published online: 30 October 2011 # Springer-Verlag 2011 Abstract Candida tropicalis is considered the first or the problem, since these infections are among the leading second non-Candida albicans Candida (NCAC) species causes of morbidity and mortality, causing an increase most frequently isolated from candidosis, mainly in patients in hospitalization time and, consequently, high costs admitted in intensive care units (ICUs), especially with associated to patient’s treatment [1, 2]. NIs have been cancer, requiring prolonged catheterization, or receiving particularly prominent in intensive care units (ICUs), broad-spectrum antibiotics. The proportion of candiduria where the incidence is two to five times higher than in and candidemia caused by C. tropicalis varies widely with the general population of hospitalized patients [3, 4]. The geographical area and patient group. Actually, in certain causes for the increased risk of NIs in ICUs have been countries, C. tropicalis is more prevalent, even compared associated with increased length of stay in ICU, invasive with C. albicans or other NCAC species. Although procedures, patients with compromised immune systems, prophylactic treatments with fluconazole cause a decrease and multiple exposure to antibiotics [5–7]. Beyond the in the frequency of candidosis caused by C. -
C. Auris Reporting Guidance
To: Healthcare Providers and Laboratorians From: Iowa Department of Public Health, Center for Acute Disease Epidemiology Re: Candida auris infection or Colonization in Iowa Residents as temporarily Reportable Date: December 4, 2020 Background: Candida auris is an emerging fungus that presents a serious global health threat. The CDC recommends that all Candida isolates obtained from normal sterile sites (e.g., bloodstream, cerebrospinal fluid) be identified to the species level as initial treatment can be administered based on the typical, species-specific susceptibility patterns. C. auris in a non-sterile body site is also very important to identify because the identification can represent wider colonization, which poses a risk for transmission and infection control precautions. If a laboratory identifies any Candida species from any site, submission of the isolate is warranted. Surveillance: All laboratories are to submit isolates from any site that include the following species: 1. Candida auris 2. Candida famata 3. Candida haemulonii 4. Candida sake 5. Rhodotorula glutinis 6. Saccharomyces cerevisiae 7. Candida spp. (isolates where the species is attempted and results are inconclusive). Algorithm to identify C. auris: The Centers for Disease Control and Prevention (CDC) provides an algorithm to identify C. auris based on phenotypic laboratory and initial species identification. The algorithm can be accessed at the following hyperlink: https://www.cdc.gov/fungal/diseases/candidiasis/pdf/Testing-algorithm-by-Method-temp.pdf. Specimen Submission: C. auris can be misidentified as a number of different organisms when using traditional phenotypic methods for yeast identification such as VITEK 2 YST, API 20C, BD Phoenix yeast identification system, and MicroScan. -
Candida Tropicalis Distribution and Drug Resistance Is Correlated with ERG11 and UPC2 Expression
Candida tropicalis distribution and drug resistance is correlated with ERG11 and UPC2 expression Dan Wang hospital Na An hospital Yuwei Yang hospital Xianggui Yang Abertawe Bro Morgannwg University Health Board Yingzi Fan hospital Jiafu Feng ( [email protected] ) hospital https://orcid.org/0000-0003-4240-0101 Research Keywords: Candida tropicalis, drug resistance, ERG11, UPC2 Posted Date: January 7th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-21992/v5 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published on March 15th, 2021. See the published version at https://doi.org/10.1186/s13756-021-00890-2. Page 1/17 Abstract Background: Candida tropicalis (C. tropicalis) is an important opportunistic pathogenic Candida species that can cause nosocomial infection. In this study, we analyzed the distribution and drug susceptibility of C. tropicalis and the relationship between ERG11 and UPC2 expression and resistance to azole antifungal agents. Methods: C. tropicalis was cultured and identied by Sabouraud Agar Medium, CHROM Agar Candida and ATB tests (Bio-Mérieux, France). Total RNA was extracted from the collected strains, and the ERG11 and UPC2 mRNA expression levels were analyzed by quantitative real-time PCR. Results: In total, 2872 clinical isolates of Candida, including 319 strains of C. tropicalis, were analyzed herein; they were mainly obtained from the Departments of Respiratory Medicine and ICU. The strains were predominantly isolated from airway secretion samples, and the detection trend in four years was mainly related to the type of department and specimens. -
Hospital Laboratory Survey for Identification of Candida Auris In
Journal of Fungi Article Hospital Laboratory Survey for Identification of Candida auris in Belgium Klaas Dewaele 1 , Katrien Lagrou 2,3, Johan Frans 1, Marie-Pierre Hayette 4 and Kris Vernelen 5,* 1 Department of Clinical Microbiology, Imelda General Hospital, 2820 Bonheiden, Belgium 2 Department of Laboratory Medicine and National Reference Centre for Mycosis, University Hospitals of Leuven, 3000 Leuven, Belgium 3 Department of Microbiology, Immunology and Transplantation, KU Leuven, 3000 Leuven, Belgium 4 Department of Clinical Microbiology and National Reference Center for Mycosis, University Hospital of Liège, 4000 Liège, Belgium 5 Quality of Laboratories, Sciensano, 1050 Brussels, Belgium * Correspondence: [email protected] Received: 4 August 2019; Accepted: 27 August 2019; Published: 5 September 2019 Abstract: Candida auris is a difficult-to-identify, emerging yeast and a cause of sustained nosocomial outbreaks. Presently, not much data exist on laboratory preparedness in Europe. To assess the ability of laboratories in Belgium and Luxembourg to detect this species, a blinded C. auris strain was included in the regular proficiency testing rounds organized by the Belgian public health institute, Sciensano. Laboratories were asked to identify and report the isolate as they would in routine clinical practice, as if grown from a blood culture. Of 142 respondents, 82 (57.7%) obtained a correct identification of C. auris. Of 142 respondents, 27 (19.0%) identified the strain as Candida haemulonii. The remaining labs that did not obtain a correct identification (33/142, 23.2%), reported other yeast species (4/33) or failed to obtain a species identification (29/33). To assess awareness about the infection-control implications of the identification, participants were requested to indicate whether referral of this isolate to a reference laboratory was desirable in a clinical context. -
Vaginal Colonization and Vulvovaginitis by Candida Species in Pregnant Women from Northern of Colombia
Archivos de Medicina (Col) ISSN: 1657-320X [email protected] Universidad de Manizales Colombia Vaginal colonization and vulvovaginitis by Candida species in pregnant women from Northern of Colombia Suárez, Paola; Belloz, Ana; Puelloz, Martha; Youngz, Gregorio; Duranz, Marlene; Arechavala, Alicia Vaginal colonization and vulvovaginitis by Candida species in pregnant women from Northern of Colombia Archivos de Medicina (Col), vol. 18, no. 1, 2018 Universidad de Manizales, Colombia Available in: https://www.redalyc.org/articulo.oa?id=273856494005 DOI: https://doi.org/10.30554/archmed.18.1.2010.2018 PDF generated from XML JATS4R by Redalyc Project academic non-profit, developed under the open access initiative Artículos de Investigación Vaginal colonization and vulvovaginitis by Candida species in pregnant women from Northern of Colombia Vulvovaginitis y colonización vaginal por especies de Candida en gestantes del norte de Colombia Resumen Paola Suárez [email protected] Cartagena University, Colombia Ana Belloz [email protected] Cartagena University., Colombia Martha Puelloz [email protected] Cartagena University., Colombia Gregorio Youngz [email protected] Cartagena University., Colombia Marlene Duranz [email protected] Cartagena University., Colombia Archivos de Medicina (Col), vol. 18, no. 1, 2018 Alicia Arechavala [email protected] Universidad de Manizales, Colombia Hospital de Infecciosas Muñiz, Buenos Aires, Argentina., Argentina Received: 10 June 2018 Corrected: 12 March 2018 Accepted: 12 April 2018 DOI: https://doi.org/10.30554/ Abstract: Objective: identify the vaginal colonizing Candida species and VVC species, archmed.18.1.2010.2018 predisposing factors and susceptibility against fluconazole in pregnant women attending Redalyc: https://www.redalyc.org/ gynecological outpatient of a maternal clinic in Cartagena (Colombia). -
Setting a Protocol for Identification and Detecting the Prevalence of Candida Auris in Tertiary Egyptian Hospitals Using the CDC Steps
Scientific Foundation SPIROSKI, Skopje, Republic of Macedonia Open Access Macedonian Journal of Medical Sciences. 2021 Jun 14; 9(A):397-402. https://doi.org/10.3889/oamjms.2021.6095 eISSN: 1857-9655 Category: A - Basic Sciences Section: Microbiology Setting a Protocol for Identification and Detecting the Prevalence of Candida auris in Tertiary Egyptian Hospitals Using the CDC Steps Sahar Mohammed Khairat, Mervat Gaber Anany, Maryam Mostafa Ashmawy , Amira Farouk Ahmed Hussein* Department of Clinical and Chemical Pathology, Faculty of Medicine, Cairo University, Giza, Egypt Abstract Edited by: Slavica Hristomanova-Mitkovska BACKGROUND: Candida is considered the most common cause of opportunistic infections in the world. Increased Citation: Khairat SM, Ashmawy MM, Hussein A. Setting a Protocol for Identification and Detecting the Prevalence use of antifungal agents may have led to increasing resistance of Candida for antifungals and may be related of Candida auris in Tertiary Egyptian Hospitals Using to therapeutic failures. Recently, a multidrug-resistant Candida auris has immerged causing outbreaks in several the CDC Steps. Access Maced J Med Sci. 2021 Jun 14; countries all over the world. This discovered superbug is widely spread causing a broad range of health care- 9(A):397-402. https://doi.org/10.3889/oamjms.2021.6095 associated infections. Keywords: Candida auris; Multidrug resistance; Thermotolerance; Matrix-assisted laser desorption/ AIM: This study aims to set a protocol for the identification and detection of the prevalence of C. auris in tertiary ionization-time of flight Egyptian hospitals following the center of disease and control (CDC) methodology. *Correspondence: Amira Farouk Ahmed Hussein, Department of Clinical and Chemical Pathology, Faculty of Medicine, Cairo University, Giza, Egypt. -
Candida Species – Morphology, Medical Aspects and Pathogenic Spectrum
European Journal of Molecular & Clinical Medicine ISSN 2515-8260 Volume 07, Issue 07, 2020 Candida Species – Morphology, Medical Aspects And Pathogenic Spectrum. Shubham Koundal1, Louis Cojandaraj2 1 Assistant Professor, Department of Medical Laboratory Sciences, Chandigarh University, Punjab. 2Assistant Professor, Department of Medical Laboratory Sciences, Lovely Professional University, Punjab. Email Id: [email protected] ABSTRACT Emergence of candidal infections are increasing from decades and found to be a leading cause of human disease and mortality. Candida spp. is one of the communal of human body and is known to cause opportunistic superficial and invasive infections. Many of mycoses-related deaths were due to Candida spp. Major shift of Candida infection towards NAC (non-albicans Candida) is matter of concern worldwide. In this study we had given a systemic review about medically important Candidaspp. Along with their morphological features, treatment and drugs. Spectrum of the pathogen is also discussed. Morphology of Different Medically Important Candida Species with their medical aspects along and pathogenic spectrum. Corn meal agar morphology along with anti-candida drugs has been discussed. The study is done after considering various published review’s and the mycological studies. Key words: Candida, Yeast, C.albicans, C. tropicalis, C. parapsilosis, C. glabrata, C. krusei and C. lusitaniae 1. INTRODUCTION Yeasts are unicellular, sometimes dimorphic fungi. It can give rise to wide range of infections in humans commonly called fungal infections. Yeast infections varies from superficial cutaneous/skin infections, mucosa related infections to multi-organ disseminated infections.(Sardi et al., 2013)Cutaneous and mucosal yeast infections can infect a number of regions in human body including the skin, nails, oral cavity, gastrointestinal tract, female genital tract and esophageal part and lead to chronic nature.