Analytical Tasks – Efficiently Solved by HPTLC
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Effect of Bioactive Compound of Aronia Melanocarpa on Cardiovascular System in Experimental Hypertension
Hindawi Oxidative Medicine and Cellular Longevity Volume 2017, Article ID 8156594, 8 pages https://doi.org/10.1155/2017/8156594 Research Article Effect of Bioactive Compound of Aronia melanocarpa on Cardiovascular System in Experimental Hypertension 1 1 1,2 1 Martina Cebova, Jana Klimentova, Pavol Janega, and Olga Pechanova 1Institute of Normal and Pathological Physiology, Slovak Academy of Sciences, Bratislava, Slovakia 2Department of Pathology, Faculty of Medicine, Comenius University, Bratislava, Slovakia Correspondence should be addressed to Martina Cebova; [email protected] Received 4 August 2017; Revised 10 October 2017; Accepted 18 October 2017; Published 30 November 2017 Academic Editor: Victor M. Victor Copyright © 2017 Martina Cebova et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Aronia melanocarpa has attracted scientific interest due to its dense contents of different polyphenols. We aimed to analyse effects of Aronia melanocarpa (AME) extract on blood pressure (BP), lipid peroxidation, cytokine level, total NOS activity in the left ventricle (LV), and aorta of L-NAME-induced hypertensive rats. 12-week-old male WKY rats were assigned to the control group and groups treated with AME extract (57.90 mg/kg/day), L-NAME (40 mg/kg/day), or combination of L-NAME (40 mg/kg/day) and AME (57.90 mg/kg/day) in tap water for 3 weeks. NOS activity, eNOS protein expression, and conjugated diene (CD) concentration were determined in the LV and aorta. After 3 weeks of L-NAME treatment, BP was increased by 28% and concomitant treatment with AME reduced it by 21%. -
SOP Template Northern Blotting with P-32
Standard Operating Procedure Procedure Northern Blotting using 32P Department Location SOP Prepared By: Section 1: Purpose Northern blotting is a standard method for the detection and quantification of RNA from a cell. This is done by isolating and purifying RNA and using a radioactively-labeled DNA or RNA probe to hybridize to and detect the RNA. Using this technique, temporal and spatial location of RNA expression can be found8. Unlike RT-PCR (real-time PCR), which quantifies the amount of RNA or DNA at various times, Northern blotting can be used not only to quantify but also determine the size of the RNA. It is also useful to perform Northern blotting when studying transfer RNA (tRNA), which appears as the two lowest bands on a gel1. The probes used in Northern blotting do not have to be radioactive, but radioactive probes still have the greatest sensitivity. Quantifying mRNA of tRNA can provide insight into gene expression in cells that are exposed to different environments. Section 2: Personal Protective Equipment and Survey Equipment PPE: • Nitrile Gloves • Lab coat or lab gown • Proper enclosed shoes • Safety glasses Other Equipment: • Geiger counter • Personal chest dosimeter Section 3: Radioactive Material 32P, specific type varies according to what procedure is followed for probe design Supplier: Perkin Elmer Starting activity: 10 mCi/mL Typical use quantities: no more than 10uCi per experiment • Radioactive material (RAM) benchtop exposure time: ~10-20 minutes Activity used per experiment: _______________ RAM handling time: _______________ Frequency of experiment: _______________ Section 4: Potential Hazards • 32P is a high-energy beta emitter and has a half-life of 14.29 days. -
Glycoprotein Detection with the Odyssey Infrared Imaging System
Glycoprotein Detection with the Odyssey ® Infrared Imaging System Julie A. Champoux, Kristi L.H. Ambroz, Joseph B. Hwang, William M. Volcheck, and Amy R. Schutz-Geshwender LI-COR Biosciences, Lincoln, NE 68504 INTRODUCTION bination of lectins can also be used to dissect the Glycosylation is one of the most common and carbohydrate composition of a target protein. important events in post-translational modifica- For more information about IRDye products tion, with over half of all proteins believed to be used in this study, go to http://www.licor.com/bio/ glycosylated.1 Cellular glycoconjugates play reagents/irdyes.jsp. important roles in many biological processes and have been implicated in cancer development, MATERIALS AND METHODS retrovirus infection and other diseases. Carbohy- Sensitivity of biotinylated Con A / IRDye drate-binding proteins known as lectins bind to 800CW-streptavidin and IRDye 800CW-Con A specific oligosaccharides, and can serve as markers Two-fold serial dilutions of α2-macroglobulin, to identify certain cell types or cellular compo- glucose oxidase and RNAse B (Sigma Cat# nents. Lectins have very high binding specificity M6159, 49178 and NEB Cat# P7817S were and have been used to characterize and purify mixed and separated on 4-12% polyacrylamide oligosaccharides.2 This application note describes Tris-glycine gels (Novex/Invitrogen). Samples the use of lectins to detect glycoproteins in West- were electrophoretically transferred onto nitro- ern blot format using the Odyssey® Infrared cellulose membrane (Osmonics). For all blots in Imaging System. this study, blocking was carried out with Odyssey Concanavalin A (Con A) is a carbohydrate- Blocking Buffer (LI-COR, Part # 927-40000) for 1 h binding protein that binds specifically to the at room temperature; washing was performed in most commonly occurring sugars: α-D-mannose, PBST (PBS + 0.1% Tween®-20) for 4 x 5 min, fol- α-D-glucose and, with lower affinity, α-N-acetyl- lowed by a 5 min rinse in PBS before imaging. -
Near-Infrared Fluorescent Northern Blot
Downloaded from rnajournal.cshlp.org on October 6, 2021 - Published by Cold Spring Harbor Laboratory Press METHOD Near-infrared fluorescent northern blot BRET R. MILLER,1,4 TIANQI WEI,1,4 CHRISTOPHER J. FIELDS,1,2 PEIKE SHENG,1,2 and MINGYI XIE1,2,3 1Department of Biochemistry and Molecular Biology, University of Florida, Gainesville, Florida 32610, USA 2UF Health Cancer Center, University of Florida, Gainesville, Florida 32610, USA 3UF Genetics Institute, University of Florida, Gainesville, Florida 32610, USA ABSTRACT Northern blot analysis detects RNA molecules immobilized on nylon membranes through hybridization with radioactive 32P-labeled DNA or RNA oligonucleotide probes. Alternatively, nonradioactive northern blot relies on chemiluminescent reactions triggered by horseradish peroxidase (HRP) conjugated probes. The use of regulated radioactive material and the complexity of chemiluminescent reactions and detection have hampered the adoption of northern blot techniques by the wider biomedical research community. Here, we describe a sensitive and straightforward nonradioactive northern blot method, which utilizes near-infrared (IR) fluorescent dye-labeled probes (irNorthern). We found that irNorthern has a detection limit of ∼0.05 femtomoles (fmol), which is slightly less sensitive than 32P-Northern. However, we found that the IR dye-labeled probe maintains the sensitivity after multiple usages as well as long-term storage. We also present al- ternative irNorthern methods using a biotinylated DNA probe, a DNA probe labeled by terminal transferase, or an RNA probe labeled during in vitro transcription. Furthermore, utilization of different IR dyes allows multiplex detection of dif- ferent RNA species. Therefore, irNorthern represents a more convenient and versatile tool for RNA detection compared to traditional northern blot analysis. -
NORTHERN BLOT SEM.I Dr.Ramesh Pathak the Northern Blot Is Also
NORTHERN BLOT SEM.I Dr.Ramesh Pathak The Northern blot is also called RNA blot. It is a technique used in molecular biology to study gene expression by detection of RNA in a sample. The northern blot technique developed by James Alwine, David Kemp and Jeorge Stark at Stanford University with contribution from Gerhard Heinrich in 1977.Northern blotting takes its name from its similarity to the first blotting technique, the southern blotting named after biologist Edwin Southern. Procedure The blotting process starts with extraction of total RNA from a homogenized tissue sample or cells on agarose gel containing formaldehyde which is a denaturing agent for the RNA to limit secondary structure. Eukaryotic mRNA can then be isolated through the use of oligo(dT) cellulose chromatography to isolate only those RNAs with a poly A tail. RNA samples are then separated by gel electrophoresis. Since the gels are fragile and the probes are unable to enter matrix, the RNA samples, now separated by size, are transferred to nylon membrane through a capillary or vacuum blotting system. A nylon membrane with a positive charge, is the most effective for use in northern blotting since the negatively charged nucleic acids have a high affinity for them. The transfer buffer used for the blotting usually contain formamide because it lowers the annealing temperature of the probe-RNA interaction, thus eliminating the need for high temperature, which could cause RNA degradation. Once the RNA has been transferred to the membrane, it is immobilized through covalent linkage to the membrane by UV light or heat. -
Gene Expression Detection Methods RNA
Gene expression detection methods RNA Dr. Ingrid Müller - AG von Laer 1 TRANSCRIPTIONAL CONTROL REGULATES DIFFERENTIATION Four different human cells - same genes, different structures and functions due to differential gene expression 2 THE CENTRAL DOGMA • Flow of Information: DNA Replication Transcription Translation A B Cells in all living organisms are continually activating or deactivating genes through gene expression, which contain the information required for producing proteins through proteins synthesis. When a particular protein is required by the cell, the gene coding for that protein is activated. The first stage in producing a protein involves the production of an RNA copy of the gene's DNA sequence. This RNA copy is the messenger RNA. The amount of mRNA produced correlates with the amount of protein eventually synthesised and measuring the amount of a particular mRNA produced by a given cell or tissue is often easier than measuring the amount of the final protein. Levels in gene activation may vary between cancerogenic and healthy cells. 3 MOLECULAR METHODS TOOL BOX I. Analysis II. Overexpression III. Inhibition •Western Blot •(adding proteins to in •pharmacological inhibitors, •Proteomics vitro reactions) •dominant-negative Protein •immuno- proteins, histochemisty • protein depletion using •protein chimera antibodies •Electrophoresis •microinjection •RNAi & •Northern Blot •siRNA •RNAse protection •Morpholinos RNA assays •Microarrays •RT-PCR •RNA in-situ •Reporter genes •(microinjection) •Knock-out •Electroporation, •Integrational mutagenesis DNA (gene) •lipofection, •Classic genetics •transgenics 4 RNA METHODS: ELECTROPHORESIS 5 PURIFICATION OF MESSENGER RNA USING OLIGO DT COLUMNS Total cellular RNA; apply at room temperature to Break open anneal polyA tail to oligo(dT) cells in the presence of RNAse Oligo(dT) inhibitors attached to AAAA. -
Wedelolactone Induces Growth of Breast Cancer Cells by Stimulation of Estrogen Receptor Signalling
Journal of Steroid Biochemistry & Molecular Biology 152 (2015) 76–83 Contents lists available at ScienceDirect Journal of Steroid Biochemistry & Molecular Biology journa l homepage: www.elsevier.com/locate/jsbmb Wedelolactone induces growth of breast cancer cells by stimulation of estrogen receptor signalling a a,b c,d c,d a,d, Tereza Nehybova , Jan Smarda , Lukas Daniel , Jan Brezovsky , Petr Benes * a Laboratory of Cellular Differentiation, Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5/A36, 625 00 Brno, Czech Republic b Masaryk Memorial Cancer Institute, RECAMO, Zluty kopec 7, 656 53 Brno, Czech Republic c Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625 00 Brno, Czech Republic d International Clinical Research Center, Center for Biological and Cellular Engineering, St. Anne’s University Hospital, Pekarska 53, 656 91 Brno, Czech Republic A R T I C L E I N F O A B S T R A C T Article history: Wedelolactone, a plant coumestan, was shown to act as anti-cancer agent for breast and prostate Received 17 December 2014 carcinomas in vitro and in vivo targeting multiple cellular proteins including androgen receptors, Received in revised form 9 April 2015 5-lipoxygenase and topoisomerase IIa. It is cytotoxic to breast, prostate, pituitary and myeloma cancer Accepted 26 April 2015 cell lines in vitro at mM concentrations. In this study, however, a novel biological activity of nM dose of Available online 28 April 2015 wedelolactone was demonstrated. Wedelolactone acts as agonist of estrogen receptors (ER) a and b as demonstrated by transactivation of estrogen response element (ERE) in cells transiently expressing either Keywords: ERa or ERb and by molecular docking of this coumestan into ligand binding pocket of both ERa and ERb. -
The Concise Guide to PHARMACOLOGY 2015/16
Edinburgh Research Explorer The Concise Guide to PHARMACOLOGY 2015/16 Citation for published version: Alexander, SP, Fabbro, D, Kelly, E, Marrion, N, Peters, JA, Benson, HE, Faccenda, E, Pawson, AJ, Sharman, JL, Southan, C, Davies, JA & Collaborators, C 2015, 'The Concise Guide to PHARMACOLOGY 2015/16: Enzymes', British Journal of Pharmacology, vol. 172, no. 24, pp. 6024-6109. https://doi.org/10.1111/bph.13354 Digital Object Identifier (DOI): 10.1111/bph.13354 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: British Journal of Pharmacology General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The University of Edinburgh has made every reasonable effort to ensure that Edinburgh Research Explorer content complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 05. Oct. 2021 S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2015/16: Enzymes. British Journal of Pharmacology (2015) 172, 6024–6109 THE CONCISE GUIDE TO PHARMACOLOGY 2015/16: Enzymes Stephen PH Alexander1, Doriano Fabbro2, Eamonn -
Combined Extract of Leonurus Japonicus Houtt, Eclipta Prostrata L
foods Article Combined Extract of Leonurus japonicus Houtt, Eclipta prostrata L., and Pueraria lobata Ohwi Improved Hot Flashes and Depression in an Ovariectomized Rat Model of Menopause Eun Young Kang 1, Hyun Kyung Kim 1, Ji Yeon Jung 1, Ji Hyun Kim 1, Tan Kyung Woo 1, Jeong In Choi 2, Jong Hoon Kim 2, Changwon Ahn 2, Hyeon Gyu Lee 3,* and Gwang-Woong Go 1,* 1 Department of Food and Nutrition, Hanyang University, Seoul 04763, Korea; [email protected] (E.Y.K.); [email protected] (H.K.K.); [email protected] (J.Y.J.); [email protected] (J.H.K.); [email protected] (T.K.W.) 2 Research and Development Center, Nong Shim Co., Ltd., Seoul 07057, Korea; [email protected] (J.I.C.); [email protected] (J.H.K.); [email protected] (C.A.) 3 Korean Living Science Research Center, Hanyang University, Seoul 04763, Korea * Correspondence: [email protected] (H.G.L.); [email protected] (G.-W.G.); Tel.: +82-2-2220-1201 (H.G.L.); +82-2-2220-1206 (G.-W.G.) Abstract: Menopause leads to ovarian hormone loss, which causes symptoms such as weight gain, hot flashes, and depression. Exploring nutraceuticals is important for treating menopausal symptoms that extensively impact women’s quality of life. We hypothesized that a combination of Leonurus japonicus Houtt, Eclipta prostrata L., and Pueraria lobata Ohwi (LEPE) would alleviate menopausal symptoms in an ovariectomized menopausal rat model. Bilateral ovariectomy was performed and animals were assigned to five groups: (1) Sham, (2) Vehicle, (-) Control, (3) LEPE (100 mg/kg bw), Citation: Kang, E.Y.; Kim, H.K.; Jung, µ J.Y.; Kim, J.H.; Woo, T.K.; Choi, J.I.; (4) LEPE (200 mg/kg bw), and (5) Estradiol (3 g/kg bw). -
Synthesis and Bioactivity of Analogues of the Marine Antibiotic Tropodithietic Acid
Synthesis and bioactivity of analogues of the marine antibiotic tropodithietic acid Patrick Rabe1, Tim A. Klapschinski1, Nelson L. Brock1, Christian A. Citron1, Paul D’Alvise2, Lone Gram2 and Jeroen S. Dickschat*1 Letter Open Access Address: Beilstein J. Org. Chem. 2014, 10, 1796–1801. 1Kekulé-Institut für Organische Chemie, Rheinische doi:10.3762/bjoc.10.188 Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121 Bonn, Germany and 2Department of Systems Biology, Received: 17 April 2014 Technical University of Denmark, Matematiktorvet bldg. 301, 2800 Accepted: 22 July 2014 Kongens Lyngby, Denmark Published: 06 August 2014 Email: This article is part of the Thematic Series "Natural products in synthesis Jeroen S. Dickschat* - [email protected] and biosynthesis". * Corresponding author Associate Editor: K. N. Ganesh Keywords: © 2014 Rabe et al; licensee Beilstein-Institut. antibiotics; natural products; Roseobacter; SAR study; tropodithietic License and terms: see end of document. acid; tropone Abstract Tropodithietic acid (TDA) is a structurally unique sulfur-containing antibiotic from the Roseobacter clade bacterium Phaeobacter inhibens DSM 17395 and a few other related species. We have synthesised several structural analogues of TDA and used them in bioactivity tests against Staphylococcus aureus and Vibrio anguillarum for a structure–activity relationship (SAR) study, revealing that the sulfur-free analogue of TDA, tropone-2-carboxylic acid, has an antibiotic activity that is even stronger than the bioactivity of the natural product. The synthesis of this compound and of several analogues is presented and the bioactivity of the synthetic compounds is discussed. Introduction Tropodithietic acid (TDA, 1a) is an antibiotic produced by the that are located on a plasmid [6,7], and the adjacent paaZ2 gene marine bacterium Phaeobacter inhibens. -
Relationships Between the Content of Phenolic Compounds and the Antioxidant Activity of Polish Honey Varieties As a Tool for Botanical Discrimination
molecules Article Relationships between the Content of Phenolic Compounds and the Antioxidant Activity of Polish Honey Varieties as a Tool for Botanical Discrimination Monika K˛edzierska-Matysek 1, Małgorzata Stryjecka 2, Anna Teter 1 , Piotr Skałecki 1, Piotr Domaradzki 1 and Mariusz Florek 1,* 1 Institute of Quality Assessment and Processing of Animal Products, University of Life Sciences in Lublin, Akademicka 13, 20-950 Lublin, Poland; [email protected] (M.K.-M.); [email protected] (A.T.); [email protected] (P.S.); [email protected] (P.D.) 2 Institute of Agricultural Sciences, State School of Higher Education in Chełm, Pocztowa 54, 22-100 Chełm, Poland; [email protected] * Correspondence: mariusz.fl[email protected]; Tel.: +48-81-4456621 Abstract: The study compared the content of eight phenolic acids and four flavonoids and the antioxidant activity of six Polish varietal honeys. An attempt was also made to determine the correlations between the antioxidant parameters of the honeys and their polyphenol profile using principal component analysis. Total phenolic content (TPC), total flavonoid content (TFC), antioxidant activity (ABTS) and reduction capacity (FRAP) were determined spectrophotometrically, and the phenolic compounds were determined using high-performance liquid chromatography (HPLC). The buckwheat honeys showed the strongest antioxidant activity, most likely because they had the highest Citation: K˛edzierska-Matysek,M.; concentrations of total phenols, total flavonoids, p-hydroxybenzoic acid, caffeic acid, p-coumaric acid, Stryjecka, M.; Teter, A.; Skałecki, P.; vanillic acid and chrysin. The principal component analysis (PCA) of the data showed significant Domaradzki, P.; Florek, M. -
Herbal Extract of Wedelia Chinensis Attenuates Androgen Receptor
Published OnlineFirst August 18, 2009; DOI: 10.1158/1078-0432.CCR-09-0298 Cancer Therapy: Preclinical Herbal Extract of Wedelia chinensis Attenuates Androgen Receptor Activity and Orthotopic Growth of Prostate Cancer in Nude Mice Chin-Hsien Tsai,1,3 Feng-Min Lin,1 Yu-Chih Yang,1 Ming-Ting Lee,2,3 Tai-Lung Cha,4 Guan-James Wu,1 Shih-Chuan Hsieh,1 and Pei-Wen Hsiao1 Abstract Purpose: Wedelia chinensis is a common ingredient of anti-inflammatory herbal med- icines in Taiwan and southern China. Inflammation is involved in promoting tumor growth, invasion, and metastasis. This study aims to test the biological effects in vivo of W. chinensis extract on prostate cancer. Experimental Design: The in vivo efficacy and mechanisms of action of oral adminis- tration of a standardized extract of W. chinensis were analyzed in animals bearing a subcutaneous or orthotopic prostate cancer xenograft. Results: Exposure of prostate cancer cells to W. chinensis extract induced apoptosis selectively in androgen receptor (AR)–positive prostate cancer cells and shifted the pro- portion in each phase of cell cycle toward G2-M phase in AR-negative prostate cancer cells. Oral herbal extract (4 or 40 mg/kg/d for 24-28 days) attenuated the growth of pros- tate tumors in nude mice implanted at both subcutaneous (31% and 44%, respectively) and orthotopic (49% and 49%, respectively) sites. The tumor suppression effects were associated with increased apoptosis and lower proliferation in tumor cells as well as reduced tumor angiogenesis. The antitumor effect of W. chinensis extract was correlat- ed with accumulation of the principle active compounds wedelolactone, luteolin, and apigenin in vivo.