Farran, 1913) in a Mediterranean Coastal Ecosystem
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New Insights Into Global Biogeography, Population Structure and Natural Selection from the Genome of the Epipelagic Copepod Oithona
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/317819489 New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona Article in Molecular Ecology · June 2017 DOI: 10.1111/mec.14214 CITATIONS READS 5 296 12 authors, including: Mohammed-Amin Madoui Julie Poulain Genoscope - Centre National de Séquençage Atomic Energy and Alternative Energies Commission 30 PUBLICATIONS 543 CITATIONS 352 PUBLICATIONS 17,316 CITATIONS SEE PROFILE SEE PROFILE Kevin Sugier Benjamin Noel Genoscope - Centre National de Séquençage CEA-Institut de Génomique 2 PUBLICATIONS 5 CITATIONS 67 PUBLICATIONS 5,688 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Caracterization of new viruses from Arthropods View project TARA Expeditions : http://oceans.taraexpeditions.org/en/m/science/goals/ View project All content following this page was uploaded by Mohammed-Amin Madoui on 26 July 2017. The user has requested enhancement of the downloaded file. Received: 22 January 2017 | Revised: 22 March 2017 | Accepted: 24 May 2017 DOI: 10.1111/mec.14214 ORIGINAL ARTICLE New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona Mohammed-Amin Madoui1,2,3 | Julie Poulain1 | Kevin Sugier1,2,3 | Marc Wessner1 | Benjamin Noel1 | Leo Berline4 | Karine Labadie1 | Astrid Cornils5 | Leocadio Blanco-Bercial6 | Lars Stemmann7 -
The Non-Native Copepod Oithona Davisae (Ferrari FD and Orsi, 1984)
BioInvasions Records (2013) Volume 2, Issue 2: 119–124 Open Access doi: http://dx.doi.org/10.3391/bir.2013.2.2.04 © 2013 The Author(s). Journal compilation © 2013 REABIC Research Article The non-native copepod Oithona davisae (Ferrari F.D. and Orsi, 1984) in the Western Black Sea: seasonal and annual abundance variability Vesselina Mihneva1* and Kremena Stefanova2 1 Institute of Fisheries, Blvd Primorski 4, Varna 9000, PO Box 72, Bulgaria 2 Institute of Oceanology, Str Parvi May 40, Varna, 9000, PO Box 152, Bulgaria E-mail: [email protected] (VM), [email protected] (KS) *Corresponding author Received: 6 July 2012 / Accepted: 31 January 2013 / Published online: 14 February 2013 Handling editor: Vadim Panov Abstract A new cyclopoid copepod species, Oithona davisae was discovered during regular monitoring along the western coast of the Black Sea in 2009–2012. In the short period since its discovery off the Bulgarian Coast, O. davisae populations have increased to become one of the dominant zooplankters, contributing up to 63.5–70.5 % of total mesozooplankton numbers in the Varna Bay and adjacent open sea waters. This species thrived in early autumn with a maximum density of 43818 ind.m-3 in the eutrophic Varna Bay, but seasonal and annual abundance fluctuated widely during the investigation period. Temperature variability, changes in the phytoplankton community composition, and decreased abundance of gelatinous plankton were investigated as possible drivers for rapid increase in the new established population O. davisae in the Black Sea. Key words: alien species; abundance fluctuations; zooplankton; Varna Bay copepod that was widely distributed in the region Introduction in the 1970’s and 1980’s, where it was present at high densities in the surface layer. -
Invert3 2 115 135 Abiahy at All.PM6
Invertebrate Zoology, 2006, 3(2): 115-135 INVERTEBRATE ZOOLOGY, 2006 published online 06.01.2007 accepted for publication 21.11.2006 Redescription of Limnoithona tetraspina Zhang et Li, 1976 (Copepoda, Cyclopoida) with a discussion of character states shared with the Oithonidae and older cyclopoids Bernardo Barroso do Abiahy\ Carlos Eduardo Falavigna da Rocha^, Frank D. Ferrari^ ' Avenida Manuel Hipolito do Rego 1270/ap. 09, 11.600-000 Sao Sebastiao, SP, Brasd ^ Universidade de Sao Paulo, Instituto de Biociencias, Departamento de Zoologia, Rua do Matdo, travessa 14, No. 321, 05508-900 Sao Paulo, Brazd 'Department of Invertebrate Zoology, MRC-534, National Museum of Natural History, Smithso- nian Institution, 4210 Silver Hill Rd., Suitland, MD 20746 U.S.A. ABSTRACT: Limnoithona tetraspina Zhang et Li, 1976 is redescribed, and the morpho- logy of the cephalosome, rostral area, oral appendages, legs 1-6 andurosome of adult males and females is illustrated. Morphological features separating L. tetraspina from its only congener,Z.5/«e«5;5, include: a more pronounced rostrum; 1 seta more on the proximal lobe of the basis of the maxillule; 1 seta more on the endopod of the maxillule; middle endopodal segment of swimming legs 2-A with 1 seta more; proximal and distal seta of the middle endopodal segment of swimming leg 4 with a flange; exopod of leg 5 with a proximal lateral seta; male cephalosome ventrally with pores with cilia. A rounded projection between labrum and rostrum is a shared derived state for both species of Limnoithona. Derived morphological features of the remaining species of Oithonidae, which are not shared with L. -
Taxonomy, Biology and Phylogeny of Miraciidae (Copepoda: Harpacticoida)
TAXONOMY, BIOLOGY AND PHYLOGENY OF MIRACIIDAE (COPEPODA: HARPACTICOIDA) Rony Huys & Ruth Böttger-Schnack SARSIA Huys, Rony & Ruth Böttger-Schnack 1994 12 30. Taxonomy, biology and phytogeny of Miraciidae (Copepoda: Harpacticoida). - Sarsia 79:207-283. Bergen. ISSN 0036-4827. The holoplanktonic family Miraciidae (Copepoda, Harpacticoida) is revised and a key to the four monotypic genera presented. Amended diagnoses are given for Miracia Dana, Oculosetella Dahl and Macrosetella A. Scott, based on complete redescriptions of their respective type species M. efferata Dana, 1849, O. gracilis (Dana, 1849) and M. gracilis (Dana, 1847). A fourth genus Distioculus gen. nov. is proposed to accommodate Miracia minor T. Scott, 1894. The occurrence of two size-morphs of M. gracilis in the Red Sea is discussed, and reliable distribution records of the problematic O. gracilis are compiled. The first nauplius of M. gracilis is described in detail and changes in the structure of the antennule, P2 endopod and caudal ramus during copepodid development are illustrated. Phylogenetic analysis revealed that Miracia is closest to the miraciid ancestor and placed Oculosetella-Macrosetella at the terminal branch of the cladogram. Various aspects of miraciid biology are reviewed, including reproduction, postembryonic development, verti cal and geographical distribution, bioluminescence, photoreception and their association with filamentous Cyanobacteria {Trichodesmium). Rony Huys, Department of Zoology, The Natural History Museum, Cromwell Road, Lon don SW7 5BD, England. - Ruth Böttger-Schnack, Institut für Meereskunde, Düsternbroo- ker Weg 20, D-24105 Kiel, Germany. CONTENTS Introduction.............. .. 207 Genus Distioculus pacticoids can be carried into the open ocean by Material and methods ... .. 208 gen. nov.................. 243 algal rafting. Truly planktonic species which perma Systematics and Distioculus minor nently reside in the water column, however, form morphology .......... -
Oithona Baird, 1843
# 188 MAY 2019 Oithona Baird, 1843 ICES IDENTIFICATION LEAFLETS FOR PLANKTON ICES INTERNATIONAL COUNCIL FOR THE EXPLORATION OF THE SEA CIEM CONSEIL INTERNATIONAL POUR L’EXPLORATION DE LA MER ICES IDENTIFICATION LEAFLETS FOR PLANKTON NO. 188 MAY 2019 Oithona Baird, 1843 Maria Grazia Mazzocchi International Council for the Exploration of the Sea Conseil International pour l’Exploration de la Mer H. C. Andersens Boulevard 44–46 DK-1553 Copenhagen V Denmark Telephone (+45) 33 38 67 00 Telefax (+45) 33 93 42 15 www.ices.dk [email protected] Recommended format for purposes of citation: Mazzocchi, M. G. 2019. Oithona Baird, 1843. ICES Identification Leaflets for Plankton. No. 188, pp. 16. http://doi.org/10.17895/ices.pub.5254 Series Editors: Antonina dos Santos and Lidia Yebra. Prepared under the auspices of the ICES Working Group on Zooplankton Ecology. The material in this report may be reused for non-commercial purposes using the recommended citation. ICES may only grant usage rights of information, data, images, graphs, etc. of which it has ownership. For other third-party material cited in this report, you must contact the original copyright holder for permission. For citation of datasets or use of data to be included in other databases, please refer to the latest ICES data policy on the ICES website. All extracts must be acknowledged. For other reproduction requests please contact the General Secretary. Cover image: Inês M. Dias and Lígia F. de Sousa for ICES ID Plankton Leaflets. ISBN 978-87-7482-233-2 ISSN 0109–2510 © 2019 International Council for the Exploration of the Sea Oithona Baird, 1843 | 1 Contents 1 Abstract ........................................................................................................................... -
Composition and Sources of Near Reef Zooplankton on a Jamaican Forereef Along with Implications for Coral Feeding
Coral Reefs (2004) 23: 263–276 DOI 10.1007/s00338-004-0375-0 REPORT K. B. Heidelberg Æ K. P. Sebens Æ J. E. Purcell Composition and sources of near reef zooplankton on a Jamaican forereef along with implications for coral feeding Received: 20 September 2001 / Accepted: 17 April 2003 / Published online: 10 March 2004 Ó Springer-Verlag 2004 Abstract Nocturnal near-reef zooplankton from the Keywords Demersal zooplankton Æ Coral feeding Æ forereef of Discovery Bay, Jamaica, were sampled dur- Copepod Æ Reef ing winter and summer 1994 using a diver-operated plankton pump with an intake head positioned within centimeters of benthic zooplanktivores. The pump col- lected zooplankton not effectively sampled by conven- Introduction tional net tows or demersal traps. We found consistently greater densities of zooplankton than did earlier studies Coral reef zooplankton are an important trophic link that used other sampling methods in similar locations. between primary producers and higher trophic levels on There was no significant difference between winter reefs, including scleractinian corals and fish (Porter (3491±578 mÀ3) and summer (2853±293 mÀ3)zoo- 1974; Hobson and Chess 1978; Gottfried and Roman plankton densities. Both oceanic- and reef-associated 1983; Hamner et al. 1988; Sedberry and Cuellar 1993). forms were found at temporal and spatial scales relevant Zooplankton that are potential prey to benthic organ- to benthic suspension feeders. Copepods were always the isms come from several sources and include holoplank- most abundant group, averaging 89% of the total zoo- tonic, meroplanktonic, demersal, and epibenthic species plankton, and most were not of demersal origin. -
Vertical Structure of Small Metazoan Plankton, Especially Non-Calanoid Copepods. II. Deep Eastern Mediterranean (Levantine Sea)
OCEANOLOGICA ACTA- VOL. 20- W 2 ~ ----~ Mctazoan Vertical structure of small Non-calanoid copepod Oncaea metazoan plankton, especially Levantine sea Métazoaire Copépode non-calanoïde non-calanoid copepods. Oncaea Mer Levantine II. Deep Eastern Mediterranean (Levantine Sea) Ruth BÔTTGER-SCHNACK Institut für Meereskunde an der Universitat Kiel, Düsternbrooker Wcg 20, D-24105 Kiel, Germany. · Received 11/07/95, in revised fnrm 19/12/95, accepted 18/01/96. ABSTRACT The abundance and vertical distribution of micrometazoans sampled with fine nets of 0.05 mm mesh size were studied in different regions of the Eastern Medi terranean Sea down to a maximum depth of 1850 m. Significant east-west diffe rences in biomass, total metazoan abundance and/or species composition of non-calanoid copepods were not recorded. The vertical gradient for total plank ton biomass and abundance of major taxa was more or Jess consistent, showing no secondary maximum at intermediate watcr layers. The copepods were domi nated by poecilostomatoids (genus Oncaea) which accountcd for about 50% of total copepod numbers in the water column. The greatest relative abundance of poecilostomatoids ( up to 80 %) was found in the mesopelagic zone, at 100 rn to 1050 m. In the epipelagic zone, calanoids were most numerous, however. In the bathypelagic zone below 1050 rn depth, harpacticoids (Microsetella spp.) were next in abundance to poecilostomatoids. More than 56 non-calanoid specics were recovered of which 28 belonged to the genus Oncaea. Dominant Oncaea species in the epi- and upper mesopelagic zone were O. zernovi, O. ivlevi and Oncaea sp. K. Below 450 rn and down to the deepest stratum sampled Oncaea longipes and Oncaea sp. -
Diel Cycles of Molting, Mating, Egg Sac Production and Hatching in the Swarm Forming Cyclopoid Copepod Dioithona Oculata
Plankton Biol. Ecol. 46 (2): 120-127, 1999 plankton biology & ecology '>"> The IMankion Socicly of Jap;in I'WJ Diel cycles of molting, mating, egg sac production and hatching in the swarm forming cyclopoid copepod Dioithona oculata Julie W. Ambler1, Frank D. Ferrari2, John A. Fornshell2 & Edward J. Buskey3 ' Department of Biology, Millersville University, Millersville. Pennsylvania 17551, U.S.A. : Department of Invertebrate Zoology, Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. JMarine Science Institute, The University of Texas at Austin, 750 Channelview Drive, Port Aransas, Texas 78373. U.S.A. Received 8 December 1998; accepted 14 June 1999 Abstract: Diel periodicity was discovered in 4 life cycle events for the swarming cyclopoid copepod Dioithona oculata: the molt to adult stage, mating, egg sac production, and egg hatching. The timing of these events was associated with swarming in which dioithonans form swarms at dawn and dis perse at dusk. A laboratory time course experiment revealed that molting of copepodid stage five (CV) to adult (CVI) occurred between midnight and dawn (0600 h). In videotaped experiments of labo ratory swarms, mating encounters were greatest at dawn and therefore would occur as soon as CV molted to adults and were present in swarms. In experiments with field collected swarms, 80% of egg sacs were produced by females between midnight and 0820 h the next morning, and 80% of the eggs hatched by the following night between midnight and 0500 h. Egg cycle duration (clutch duration plus inter-clutch interval) was 48 h, and the mean fecundity was 0.56 pairs of egg sacs d 1 or 7.6 eggs d~1. -
Biology, Ecology and Ecophysiology of the Box Jellyfish Carybdea Marsupialis (Cnidaria: Cubozoa)
Biology, ecology and ecophysiology of the box jellyfish Carybdea marsupialis (Cnidaria: Cubozoa) MELISSA J. ACEVEDO DUDLEY PhD Thesis September 2016 Biology, ecology and ecophysiology of the box jellysh Carybdea marsupialis (Cnidaria: Cubozoa) Biologia, ecologia i ecosiologia de la cubomedusa Carybdea marsupialis (Cnidaria: Cubozoa) Melissa Judith Acevedo Dudley Memòria presentada per optar al grau de Doctor per la Universitat Politècnica de Catalunya (UPC), Programa de Doctorat en Ciències del Mar (RD 99/2011). Tesi realitzada a l’Institut de Ciències del Mar (CSIC). Director: Dr. Albert Calbet (ICM-CSIC) Co-directora: Dra. Verónica Fuentes (ICM-CSIC) Tutor/Ponent: Dr. Xavier Gironella (UPC) Barcelona – Setembre 2016 The author has been nanced by a FI-DGR pre-doctoral fellowship (AGAUR, Generalitat de Catalunya). The research presented in this thesis has been carried out in the framework of the LIFE CUBOMED project (LIFE08 NAT/ES/0064). The design in the cover is a modication of an original drawing by Ernesto Azzurro. “There is always an open book for all eyes: nature” Jean Jacques Rousseau “The growth of human populations is exerting an unbearable pressure on natural systems that, obviously, are on the edge of collapse […] the principles we invented to regulate our activities (economy, with its innite growth) are in conict with natural principles (ecology, with the niteness of natural systems) […] Jellysh are just a symptom of this situation, another warning that Nature is giving us!” Ferdinando Boero (FAO Report 2013) Thesis contents -
Scientific Articles
Scientific articles Abed-Navandi, D., Dworschak, P.C. 2005. Food sources of tropical thalassinidean shrimps: a stable isotope study. Marine Ecology Progress Series 201: 159-168. Abed-Navandi, D., Koller,H., Dworschak, P.C. 2005. Nutritional ecology of thalassinidean shrimps constructing burrows with debris chambers: The distribution and use of macronutrients and micronutrients. Marine Biology Research 1: 202- 215. Acero, A.P.1985. Zoogeographical implications of the distribution of selected families of Caribbean coral reef fishes.Proc. of the Fifth International Coral Reef Congress, Tahiti, Vol. 5. Acero, A.P.1987. The chaenopsine blennies of the southwestern Caribbean (Pisces, Clinidae, Chaenopsinae). III. The genera Chaenopsis and Coralliozetus. Bol. Ecotrop. 16: 1-21. Acosta, C.A. 2001. Assessment of the functional effects of a harvest refuge on spiny lobster and queen conch popuplations at Glover’s Reef, Belize. Proceedings of Gulf and Caribbean Fishisheries Institute. 52 :212-221. Acosta, C.A. 2006. Impending trade suspensions of Caribbean queen conch under CITES: A case study on fishery impact and potential for stock recovery. Fisheries 31(12): 601-606. Acosta, C.A., Robertson, D.N. 2003. Comparative spatial geology of fished spiny lobster Panulirus argus and an unfished congener P. guttatus in an isolated marine reserve at Glover’s Reef atoll, Belize. Coral Reefs 22: 1-9. Allen, G.R., Steene, R., Allen, M. 1998. A guide to angelfishes and butterflyfishes.Odyssey Publishing/Tropical Reef Research. 250 p. Allen, G.R.1985. Butterfly and angelfishes of the world, volume 2.Mergus Publishers, Melle, Germany. Allen, G.R.1985. FAO Species Catalogue. Vol. 6. -
New Mediterranean Biodiversity Records (December 2019)
Collective Article Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net DOI: http://dx.doi.org/10.12681/mms.20913 New Mediterranean Biodiversity Records (December 2019) Branko DRAGIČEVIĆ1, Olga ANADOLI2, Dror ANGEL3, Mouloud BENABDI4, Ghazi BITAR5, Luca CASTRIOTA6, Fabio CROCETTA7, Alan DEIDUN8, Jakov DULČIĆ1, Dor EDELIST3,9, Vasilis GEROVASILEIOU10, Salvatore GIACOBBE11, Alenka GORUPPI 12, Tamar GUY-HAIM13, Evangelos KONSTANTINIDIS14, Zafrir KUPLIK3,15, Joachim LANGENECK16, Armando MACALI17, Ioannis MANITARAS18, Nikolas MICHAILIDIS18,19, Evangelia MICHALOUDI2, Panayotis OVALIS20, Costas PERDIKARIS14, Roberto PILLON21, Stefano PIRAINO22, Walter RENDA23, Jamila RIZGALLA24, Andrea SPINELLI25, Jonathan TEMPESTI16, Francesco TIRALONGO21, Valentina TIRELLI12, Konstantinos TSIAMIS26, Cemal TURAN27, Necdet UYGUR27, Bruno ZAVA28 and Argyro ZENETOS29 1 Institute of Oceanography and Fisheries, Šetalište Ivana Meštrovića 63, 21000 Split, Croatia 2 Department of Zoology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Greece 3 Leon Recanati Institute for Maritime Studies and the Department of Maritime Civilizations, Leon H. Charney School of Marine Science, University of Haifa, Israel 4 Laboratory of Environmental Monitoring Network, Faculty of SNV, Oran1 University, Oran, Algeria 5 Lebanese University, Faculty of Sciences, Hadath, Beirut, Lebanon 6 Institute for Environmental Protection and Research, ISPRA, Lungomare Cristoforo -
Major Patterns of Body Size Variation Within Arthropod Species: Exploring the Impact of Habitat, Temperature, Latitude, Seasonality and Altitude
Major Patterns of Body Size Variation within Arthropod Species: Exploring the Impact of Habitat, Temperature, Latitude, Seasonality and Altitude Submitted in partial fulfilment of the requirements of the Degree of Doctor of Philosophy Curtis Robert Horne June 2017 I, Curtis Robert Horne, confirm that the research included within this thesis is my own work or that where it has been carried out in collaboration with, or supported by others, that this is duly acknowledged below and my contribution indicated. Previously published material is also acknowledged below. I attest that I have exercised reasonable care to ensure that the work is original, and does not to the best of my knowledge break any UK law, infringe any third party’s copyright or other Intellectual Property Right, or contain any confidential material. I accept that the College has the right to use plagiarism detection software to check the electronic version of the thesis. I confirm that this thesis has not been previously submitted for the award of a degree by this or any other university. The copyright of this thesis rests with the author and no quotation from it or information derived from it may be published without the prior written consent of the author. Signature: Date: 2nd June 2017 i Details of collaboration and publications Author contributions and additional collaborators are listed below for each chapter, as well as details of publications where applicable. This work was supported by the Natural Environment Research Council (NE/L501797/1). I use the term ‘we’ throughout the thesis to acknowledge the contribution of others.