Signaling in T Cell Exhaustion Too Much of a Good Thing?

Total Page:16

File Type:pdf, Size:1020Kb

Signaling in T Cell Exhaustion Too Much of a Good Thing? Too Much of a Good Thing? Tim-3 and TCR Signaling in T Cell Exhaustion Robert L. Ferris, Binfeng Lu and Lawrence P. Kane This information is current as J Immunol 2014; 193:1525-1530; ; of September 26, 2021. doi: 10.4049/jimmunol.1400557 http://www.jimmunol.org/content/193/4/1525 Downloaded from References This article cites 61 articles, 23 of which you can access for free at: http://www.jimmunol.org/content/193/4/1525.full#ref-list-1 Why The JI? Submit online. http://www.jimmunol.org/ • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average by guest on September 26, 2021 Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2014 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Th eJournal of Brief Reviews Immunology Too Much of a Good Thing? Tim-3 and TCR Signaling in T Cell Exhaustion Robert L. Ferris,*,†,‡ Binfeng Lu,*,‡ and Lawrence P. Kane*,‡ T cell exhaustion is thought to be a natural mechanism and effector molecules, with IL-2, cytotoxicity and proliferation for limiting immune pathology, although it may be de- among the earliest affected functions and IFN-g among the sirable to circumvent this mechanism to help eliminate latest (1, 2). Exhausted T cells also may become “addicted” to viral reservoirs or tumors. Although there are no defin- AgR signals and lose responsiveness to the homeostatic cyto- itive markers, a fingerprint for exhausted T cells has kine IL-7, with the latter due in part to loss of CD127 (IL-7r been described that includes the transmembrane pro- a-chain) expression (2). Importantly, for possible therapeutic teins PD-1, LAG3, and Tim-3. However, apart from reversal, exhausted T cells also gain high-level and persistent, as the recruitment of tyrosine phosphatases to PD-1, little opposed to transient, expression of several proteins, including Downloaded from is known about the biochemical mechanisms by which the transcription factor BLIMP-1 and the transmembrane these proteins contribute to the development or main- proteins PD-1, Tim-3, and LAG3 (1, 2). The latter proteins, tenance of exhaustion. Tim-3 contains no known motifs so-called “checkpoint” receptors, have attracted attention as possible dominant mediators of T cell exhaustion because Abs for the recruitment of inhibitory phosphatases, but it to these proteins or their ligands can sometimes rescue the may actually increase signaling downstream of TCR/ function of exhausted T cells (2–4). Because this topic has been http://www.jimmunol.org/ CD3, at least under acute conditions. Other studies covered extensively in other relatively recent reviews (1, 2), we showed that T cell exhaustion results from chronic stim- focus mainly on recent studies of Tim-3, which has attracted ulation that extends the effector phase of T cell activa- substantial preclinical attention of late as a novel therapeutic tion, at the expense of T cell memory. We suggest that target for reversal of T cell exhaustion. We also review what is Tim-3 may contribute to T cell exhaustion by enhancing known regarding signal transduction pathways implicated in TCR-signaling pathways. The Journal of Immunology, Tim-3 function. Finally, we discuss the role of TCR signaling 2014, 193: 1525–1530. in driving the development of exhaustion and how this might be influenced by Tim-3. by guest on September 26, 2021 cell activation, including development of a robust Lessons from tumors memory response, is critical for the development of an The tumor microenvironment is known to be immunosup- efficient immune response to viral infection and can also T pressive as a result of inhibitory signals from cell surface and be instrumental in mounting an immune response to solid soluble mediators (5), although the precise strategies used by tumors. However, overly vigorous or sustained immune responses different tumors can vary by tissue and even from patient to can cause immune-mediated pathology that is detrimental to the patient. Although T cells specific to tumor Ags can be readily host. Such a problem is particularlyevidentwithvirusesthatcause isolated from solid tumors of patients and in mouse models, chronic infections (1). In these cases, the sustained presence of these cells often respond poorly to ex vivo stimulation. This T viral Ags appears to drive the formation of a state of Ag-specific cell dysfunction is thought to result, at least in part, from T cell exhaustion. Although this has the beneficial effect of exhaustion (or over-stimulation) of effector tumor-infiltrating limiting immune pathology, it can result in the establishment lymphocytes. T cell exhaustion is caused by chronic antigenic of a viral reservoir that may become reactivated under conditions stimulation and expression of inhibitory coreceptors and of physiological stress. T cell exhaustion can also be detrimental cytokines, among other factors (6). Based on the recent suc- when it impairs the ability of an adaptive immune response to cess of CTLA-4 Ab therapy (7), as well as accumulating data eliminate a tumor. from preclinical models, there is now considerable excitement Functionally, the development of T cell exhaustion is char- surrounding molecules whose targeting may allow for broad acterized by the gradual loss of expression of various cytokines enhancement of T cell responses against tumors. Solid tu- *Department of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, Address correspondence and reprint requests to Dr. Lawrence P. Kane, Department of PA 15261; †Department of Otolaryngology, University of Pittsburgh School of Medi- Immunology, University of Pittsburgh, 200 Lothrop Street, Pittsburgh, PA 15261. cine, Pittsburgh, PA 15261; and ‡Cancer Immunology Program, University of Pitts- E-mail address: [email protected] burgh Cancer Institute, University of Pittsburgh School of Medicine, Pittsburgh, PA Abbreviations used in this article: gal9, galectin-9; HCV, hepatitis C virus; mTORC1, 15261 mTOR complex 1; SH2, Src homology 2; TB, tuberculosis; Treg, regulatory T cell; WT, ORCID: 0000-0001-5198-516X (L.P.K.). wild-type. Received for publication February 28, 2014. Accepted for publication May 13, 2014. Copyright Ó 2014 by The American Association of Immunologists, Inc. 0022-1767/14/$16.00 This work was supported by National Institutes of Health Grants DE019727 and CA097190 (to R.L.F.), CA167229 and CA097190 (to B.L.), and AI109605 and AI073748 (to L.P.K.). www.jimmunol.org/cgi/doi/10.4049/jimmunol.1400557 1526 BRIEF REVIEWS: SIGNALING AND T CELL EXHAUSTION mor–infiltrating T cells often express high levels of one or ligands—galectin-9 (gal9), expressed on macrophages— more inhibitory or exhaustion-associated receptors, including stimulated the production of the cytokine IL-1b, enhancing PD-1, LAG3, and/or Tim-3. Indeed, consistent with Ag bacterial killing. This effect was mimicked by administration acting as a driver of exhaustion, a recent study on melanoma of Tim-3–Ig fusion protein, through its interaction with gal9. patients demonstrated that PD-1 can be used to prospectively A similar phenomenon was observed in human macrophages distinguish tumor-specific T cells at the tumor site (8). Tim-3 (32). At this point, the nature of the signal transmitted by expression on T cells is also seen in the context of nonsolid gal9 after Tim-3 binding is unknown. Still, this finding is of tumors. For example, upregulation of Tim-3 (possibly driven by possible relevance for the interpretation of multiple other IL-12) on effector T cells of patients with follicular B cell non- studies, because a soluble Tim-3–Ig fusion protein is often Hodgkin lymphoma was associated with poor outcomes (9). used as a blocking reagent in other settings. Returning to PD-1 has been extensively studied as a potential therapeutic T cells and human patients, active TB, as opposed to latent target, and recent clinical trial data suggest that mAbs to PD-1 infection, is associated with the upregulation of Tim-3 on or one of its ligands, PD-L1, are clinically effective against both CD4+ and CD8+ T cells (33). Surprisingly, however, certain solid tumors, including melanoma, as well as non-small these Tim-3+ T cells display more potent anti-TB responses, cell lung cancer, generally regarded as a nonimmunogenic contrary to what has been observed in chronic viral infection. tumor (10–12). mAbs specific for Tim-3 also were shown to Although the reasons for these differences are not clear, the promote rejection of solid tumors in murine models (13, 14), investigators speculated that they may be due to the somewhat + and mAbs to human Tim-3 can rescue the ex vivo function divergent phenotypes of Tim-3 TB-specific T cells compared Downloaded from of apparently exhausted T cells from tumor-bearing patients with Tim-3+ T cells found in HIV and HCV patients. For (15). In the former case, the efficacy of Tim-3 mAb therapy example, Tim-3+ T cells in TB patients were found to express appeared to result, at least in part, from effects on regulatory CD127 (IL-7r a-chain) (33), whereas this marker is well T cells (Tregs), which also can express Tim-3 (16). Strikingly, known to be lost in exhausted T cells (including those that are these Tim-3+ Tregs appear to be among the most potent at Tim-3+) during chronic viral infections of humans and mice inhibiting effector T cell function and express greater levels of (1, 2).
Recommended publications
  • Systems and Chemical Biology Approaches to Study Cell Function and Response to Toxins
    Dissertation submitted to the Combined Faculties for the Natural Sciences and for Mathematics of the Ruperto-Carola University of Heidelberg, Germany for the degree of Doctor of Natural Sciences Presented by MSc. Yingying Jiang born in Shandong, China Oral-examination: Systems and chemical biology approaches to study cell function and response to toxins Referees: Prof. Dr. Rob Russell Prof. Dr. Stefan Wölfl CONTRIBUTIONS The chapter III of this thesis was submitted for publishing under the title “Drug mechanism predominates over toxicity mechanisms in drug induced gene expression” by Yingying Jiang, Tobias C. Fuchs, Kristina Erdeljan, Bojana Lazerevic, Philip Hewitt, Gordana Apic & Robert B. Russell. For chapter III, text phrases, selected tables, figures are based on this submitted manuscript that has been originally written by myself. i ABSTRACT Toxicity is one of the main causes of failure during drug discovery, and of withdrawal once drugs reached the market. Prediction of potential toxicities in the early stage of drug development has thus become of great interest to reduce such costly failures. Since toxicity results from chemical perturbation of biological systems, we combined biological and chemical strategies to help understand and ultimately predict drug toxicities. First, we proposed a systematic strategy to predict and understand the mechanistic interpretation of drug toxicities based on chemical fragments. Fragments frequently found in chemicals with certain toxicities were defined as structural alerts for use in prediction. Some of the predictions were supported with mechanistic interpretation by integrating fragment- chemical, chemical-protein, protein-protein interactions and gene expression data. Next, we systematically deciphered the mechanisms of drug actions and toxicities by analyzing the associations of drugs’ chemical features, biological features and their gene expression profiles from the TG-GATEs database.
    [Show full text]
  • Cellular Entry and Uncoating of Naked and Quasi-Enveloped Human
    RESEARCH ARTICLE Cellular entry and uncoating of naked and quasi-enveloped human hepatoviruses Efraı´nE Rivera-Serrano1,2, Olga Gonza´ lez-Lo´ pez1,2, Anshuman Das2, Stanley M Lemon2,3* 1Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, United States; 2Department of Medicine, The University of North Carolina at Chapel Hill, Chapel Hill, United States; 3Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, United States Abstract Many ‘non-enveloped’ viruses, including hepatitis A virus (HAV), are released non- lytically from infected cells as infectious, quasi-enveloped virions cloaked in host membranes. Quasi-enveloped HAV (eHAV) mediates stealthy cell-to-cell spread within the liver, whereas stable naked virions shed in feces are optimized for environmental transmission. eHAV lacks virus- encoded surface proteins, and how it enters cells is unknown. We show both virion types enter by clathrin- and dynamin-dependent endocytosis, facilitated by integrin b1, and traffic through early and late endosomes. Uncoating of naked virions occurs in late endosomes, whereas eHAV undergoes ALIX-dependent trafficking to lysosomes where the quasi-envelope is enzymatically degraded and uncoating ensues coincident with breaching of endolysosomal membranes. Neither virion requires PLA2G16, a phospholipase essential for entry of other picornaviruses. Thus naked and quasi-enveloped virions enter via similar endocytic pathways, but uncoat in different compartments and release their genomes to the cytosol in a manner mechanistically distinct from other Picornaviridae. DOI: https://doi.org/10.7554/eLife.43983.001 *For correspondence: [email protected] Competing interests: The Introduction authors declare that no The presence or absence of an external lipid envelope has featured strongly in the systematic classi- competing interests exist.
    [Show full text]
  • Whole Exome Sequencing in Families at High Risk for Hodgkin Lymphoma: Identification of a Predisposing Mutation in the KDR Gene
    Hodgkin Lymphoma SUPPLEMENTARY APPENDIX Whole exome sequencing in families at high risk for Hodgkin lymphoma: identification of a predisposing mutation in the KDR gene Melissa Rotunno, 1 Mary L. McMaster, 1 Joseph Boland, 2 Sara Bass, 2 Xijun Zhang, 2 Laurie Burdett, 2 Belynda Hicks, 2 Sarangan Ravichandran, 3 Brian T. Luke, 3 Meredith Yeager, 2 Laura Fontaine, 4 Paula L. Hyland, 1 Alisa M. Goldstein, 1 NCI DCEG Cancer Sequencing Working Group, NCI DCEG Cancer Genomics Research Laboratory, Stephen J. Chanock, 5 Neil E. Caporaso, 1 Margaret A. Tucker, 6 and Lynn R. Goldin 1 1Genetic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD; 2Cancer Genomics Research Laboratory, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD; 3Ad - vanced Biomedical Computing Center, Leidos Biomedical Research Inc.; Frederick National Laboratory for Cancer Research, Frederick, MD; 4Westat, Inc., Rockville MD; 5Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD; and 6Human Genetics Program, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD, USA ©2016 Ferrata Storti Foundation. This is an open-access paper. doi:10.3324/haematol.2015.135475 Received: August 19, 2015. Accepted: January 7, 2016. Pre-published: June 13, 2016. Correspondence: [email protected] Supplemental Author Information: NCI DCEG Cancer Sequencing Working Group: Mark H. Greene, Allan Hildesheim, Nan Hu, Maria Theresa Landi, Jennifer Loud, Phuong Mai, Lisa Mirabello, Lindsay Morton, Dilys Parry, Anand Pathak, Douglas R. Stewart, Philip R. Taylor, Geoffrey S. Tobias, Xiaohong R. Yang, Guoqin Yu NCI DCEG Cancer Genomics Research Laboratory: Salma Chowdhury, Michael Cullen, Casey Dagnall, Herbert Higson, Amy A.
    [Show full text]
  • Pinaud-2021-Frontimmunol-New.P
    New insights into biomphalysin gene family diversification in the vector snail Biomphalaria glabrata Silvain Pinaud, Guillaume Tetreau, Pierre Poteaux, Richard Galinier, Cristian Chaparro, Damien Lassalle, Anaïs Portet, Elodie Simphor, Benjamin Gourbal, David Duval To cite this version: Silvain Pinaud, Guillaume Tetreau, Pierre Poteaux, Richard Galinier, Cristian Chaparro, et al.. New insights into biomphalysin gene family diversification in the vector snail Biomphalaria glabrata. Fron- tiers in Immunology, Frontiers, 2021, 12, 10.3389/fimmu.2021.635131. hal-03219003 HAL Id: hal-03219003 https://hal.archives-ouvertes.fr/hal-03219003 Submitted on 6 May 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. ORIGINAL RESEARCH published: 01 April 2021 doi: 10.3389/fimmu.2021.635131 New Insights Into Biomphalysin Gene Family Diversification in the Vector Edited by: Roberta Lima Caldeira, Snail Biomphalaria glabrata Oswaldo Cruz Foundation (Fiocruz), Brazil Silvain Pinaud 1,2†‡, Guillaume Tetreau 1,2‡, Pierre Poteaux 1,2, Richard Galinier 1,2, Reviewed by: Cristian Chaparro 1,2, Damien Lassalle 1,2, Anaïs Portet 1,2†, Elodie Simphor 1,2, Coenraad Adema, Benjamin Gourbal 1,2 and David Duval 1,2* University of New Mexico, United States 1 IHPE, Univ Montpellier, CNRS, IFREMER, Univ Perpignan Via Domitia, Perpignan, France, 2 CNRS, IFREMER, University of Maria G.
    [Show full text]
  • Mammalian NPC1 Genes May Undergo Positive Selection And
    Al-Daghri et al. BMC Medicine 2012, 10:140 http://www.biomedcentral.com/1741-7015/10/140 RESEARCHARTICLE Open Access Mammalian NPC1 genes may undergo positive selection and human polymorphisms associate with type 2 diabetes Nasser M Al-Daghri1,2,3*, Rachele Cagliani4, Diego Forni4, Majed S Alokail1,2,3, Uberto Pozzoli4, Khalid M Alkharfy1,2,3,5, Shaun Sabico1,2,3, Mario Clerici6,7† and Manuela Sironi4† Abstract Background: The NPC1 gene encodes a protein involved in intracellular lipid trafficking; its second endosomal loop (loop 2) is a receptor for filoviruses. A polymorphism (His215Arg) in NPC1 was associated with obesity in Europeans. Adaptations to diet and pathogens represented powerful selective forces; thus, we analyzed the evolutionary history of the gene and exploited this information for the identification of variants/residues of functional importance in human disease. Methods: We performed phylogenetic analysis, population genetic tests, and genotype-phenotype analysis in a population from Saudi Arabia. Results: Maximum-likelihood ratio tests indicated the action of positive selection on loop 2 and identified three residues as selection targets; these were confirmed by an independent random effects likelihood (REL) analysis. No selection signature was detected in present-day human populations, but analysis of nonsynonymous polymorphisms showed that a variant (Ile642Met, rs1788799) in the sterol sensing domain affects a highly conserved position. This variant and the previously described His215Arg polymorphism were tested for association with obesity and type 2 diabetes (T2D) in a cohort from Saudi Arabia. Whereas no association with obesity was detected, 642Met allele was found to predispose to T2D. A significant interaction was noted with sex (P = 0.041), and stratification on the basis of gender indicated that the association is driven by men (P = 0.0021, OR = 1.5).
    [Show full text]
  • TIMD4 Rs6882076 SNP Is Associated with Decreased Levels Of
    Int. J. Med. Sci. 2019, Vol. 16 864 Ivyspring International Publisher International Journal of Medical Sciences 2019; 16(6): 864-871. doi: 10.7150/ijms.31729 Research Paper TIMD4 rs6882076 SNP Is Associated with Decreased Levels of Triglycerides and the Risk of Coronary Heart Disease and Ischemic Stroke Eksavang Khounphinith1, Rui-Xing Yin1,2,3,, Xiao-Li Cao2,3,4, Feng Huang1,2,3, Jin-Zhen Wu1, Hui Li5 1. Department of Cardiology, Institute of Cardiovascular Diseases, The First Affiliated Hospital, Guangxi Medical University, 6 Shuangyong Road, Nanning 530021, Guangxi, China. 2. Guangxi Key Laboratory Base of Precision Medicine in Cardio-cerebrovascular Disease Control and Prevention, 6 Shuangyong Road, Nanning 530021, Guangxi, China. 3. Guangxi Clinical Research Center for Cardio-cerebrovascular Diseases, 6 Shuangyong Road, Nanning 530021, Guangxi, China. 4. Department of Neurology, The First Affiliated Hospital, Guangxi Medical University, 6 Shuangyong Road, Nanning 530021, Guangxi, China. 5. Clinical Laboratory of the Affiliated Cancer Hospital, Guangxi Medical University, 71 Hedi Road, Nanning 530021, Guangxi, China. Corresponding author: Rui-Xing Yin; [email protected] © Ivyspring International Publisher. This is an open access article distributed under the terms of the Creative Commons Attribution (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2018.11.22; Accepted: 2019.04.03; Published: 2019.06.02 Abstract Background: The T-cell immunoglobulin and mucin domain 4 gene (TIMD4) rs6882076 single nucleotide polymorphism (SNP) has been associated with serum total cholesterol, low-density lipoprotein cholesterol and triglycerides (TG) levels, but the results are inconsistent.
    [Show full text]
  • Functionally Diverse Human T Cells Recognize Non-Microbial Antigens Presented By
    RESEARCH ARTICLE Functionally diverse human T cells recognize non-microbial antigens presented by MR1 Marco Lepore1, Artem Kalinichenko1, Salvatore Calogero1, Pavanish Kumar2, Bhairav Paleja2, Mathias Schmaler1, Vipin Narang2, Francesca Zolezzi2, Michael Poidinger2,3, Lucia Mori1,2, Gennaro De Libero1,2* 1Department of Biomedicine, University Hospital and University of Basel, Basel, Switzerland; 2Singapore Immunology Network, A*STAR, Singapore, Singapore; 3Singapore Institute for Clinical Sciences, A*STAR, Singapore, Singapore Abstract MHC class I-related molecule MR1 presents riboflavin- and folate-related metabolites to mucosal-associated invariant T cells, but it is unknown whether MR1 can present alternative antigens to other T cell lineages. In healthy individuals we identified MR1-restricted T cells (named MR1T cells) displaying diverse TCRs and reacting to MR1-expressing cells in the absence of microbial ligands. Analysis of MR1T cell clones revealed specificity for distinct cell-derived antigens and alternative transcriptional strategies for metabolic programming, cell cycle control and functional polarization following antigen stimulation. Phenotypic and functional characterization of MR1T cell clones showed multiple chemokine receptor expression profiles and secretion of diverse effector molecules, suggesting functional heterogeneity. Accordingly, MR1T cells exhibited distinct T helper-like capacities upon MR1-dependent recognition of target cells expressing physiological levels of surface MR1. These data extend the role of
    [Show full text]
  • TIM 1 (HAVCR1) (NM 001099414) Human Recombinant Protein Product Data
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TP317289 TIM 1 (HAVCR1) (NM_001099414) Human Recombinant Protein Product data: Product Type: Recombinant Proteins Description: Recombinant protein of human hepatitis A virus cellular receptor 1 (HAVCR1), transcript variant 2 Species: Human Expression Host: HEK293T Tag: C-Myc/DDK Predicted MW: 37.1 kDa Concentration: >50 ug/mL as determined by microplate BCA method Purity: > 80% as determined by SDS-PAGE and Coomassie blue staining Buffer: 25 mM Tris.HCl, pH 7.3, 100 mM glycine, 10% glycerol Preparation: Recombinant protein was captured through anti-DDK affinity column followed by conventional chromatography steps. Storage: Store at -80°C. Stability: Stable for 12 months from the date of receipt of the product under proper storage and handling conditions. Avoid repeated freeze-thaw cycles. RefSeq: NP_001092884 Locus ID: 26762 UniProt ID: Q96D42 RefSeq Size: 1493 Cytogenetics: 5q33.3 RefSeq ORF: 1092 Synonyms: HAVCR; HAVCR-1; KIM-1; KIM1; TIM; TIM-1; TIM1; TIMD-1; TIMD1 This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 TIM 1 (HAVCR1) (NM_001099414) Human Recombinant Protein – TP317289 Summary: The protein encoded by this gene is a membrane receptor for both human hepatitis A virus (HHAV) and TIMD4. The encoded protein may be involved in the moderation of asthma and allergic diseases.
    [Show full text]
  • Havcr-1 and the Prevention of Metastatic Disease in Human Prostate Cancer
    HAVcR-1 and the Prevention of Metastatic Disease in Human Prostate Cancer by Emily Jacqueline Ann Telford A Dissertation Submitted to Cardiff University in Candidature for the Degree of Doctor of Philosophy Cardiff- China Medical Research Collaborative (CCMRC) Cardiff University Henry Welcome Building Heath Park CF14 4XN United Kingdom March 2019 I Declaration and Statements DECLARATION This work has not been submitted in substance for any other degree or award at this or any other university or place of learning, nor is being submitted concurrently in candidature for any degree or other award. Signed Date: 14/03/2019 STATEMENT 1 This thesis is being submitted in partial fulfilment of the requirements for the degree of PhD Signed Date: 14/03/2019 STATEMENT 2 This thesis is the result of my own independent work/investigation, except where otherwise stated, and the thesis has not been edited by a third party beyond what is permitted by Cardiff University’s Policy on the Use of Third-Party Editors by Research Degree Students. Other sources are acknowledged by explicit references. The views expressed are my own. Signed Date: 14/03/2019 STATEMENT 3 I hereby give consent for my thesis, if accepted, to be available online in the University’s Open Access repository and for inter-library loan, and for the title and summary to be made available to outside organisations. Signed Date: 14/03/2019 II Acknowledgments I would like to extend my gratitude to my supervisors, Professor Wen Jiang, Dr Stephen Hiscox and Dr Tracey Martin for their support and guidance throughout my PhD.
    [Show full text]
  • Meta-Analysis of Transcriptomic Variation in T-Cell Populations Reveals Both Variable and Consistent Signatures of Gene Expression and Splicing
    Downloaded from rnajournal.cshlp.org on October 10, 2021 - Published by Cold Spring Harbor Laboratory Press BIOINFORMATICS Meta-analysis of transcriptomic variation in T-cell populations reveals both variable and consistent signatures of gene expression and splicing CALEB M. RADENS,1 DAVIA BLAKE,2 PAUL JEWELL,3,4 YOSEPH BARASH,1,3,4 and KRISTEN W. LYNCH1,2,3,5 1Cell and Molecular Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA 2Immunology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA 3Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA 4Department of Computer Science, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA 5Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA ABSTRACT Human CD4+ T cells are often subdivided into distinct subtypes, including Th1, Th2, Th17, and Treg cells, that are thought to carry out distinct functions in the body. Typically, these T-cell subpopulations are defined by the expression of distinct gene repertoires; however, there is variability between studies regarding the methods used for isolation and the markers used to define each T-cell subtype. Therefore, how reliably studies can be compared to one another remains an open ques- tion. Moreover, previous analysis of gene expression in CD4+ T-cell subsets has largely focused on gene expression rather than alternative splicing. Here we take a meta-analysis approach, comparing eleven independent RNA-seq studies of hu- man Th1, Th2, Th17, and/or Treg cells to determine the consistency in gene expression and splicing within each subtype across studies.
    [Show full text]
  • Ebola Virus Disease - a Comprehensive Review
    Babin D Reejo, et al / Int. J. of Res. in Pharmacology & Pharmacotherapeutics Vol-3(4) 2014 [293-300] International Journal of Research in Pharmacology & Pharmacotherapeutics ISSN Print: 2278-2648 IJRPP |Vol.3 | Issue 4 | Oct-Dec-2014 ISSN Online: 2278-2656 Journal Home page: www.ijrpp.com Review article Open Access Ebola virus disease - A comprehensive review 1Babin D Reejo*, 1Jeeva James, 2Molly Mathew, 1Dilip Krishnan K, 3Manu Jose, 4P. Natarajan. 1Assistant Professor, Department of Pharmacology, Malik Deenar College of pharmacy, Seethangoli, Kasaragod-671321, Kerala, India. 2Department of Pharmacognosy, Malik Deenar College of pharmacy, Seethangoli, Kasaragod- 671321, Kerala, India. 3Department of Pharmaceutical Analysis, Malik Deenar College of pharmacy, Seethangoli, Kasaragod-671321, Kerala, India. 4Department of Pharmacology, Sankaralingam Bhuvaneswari College of Pharmacy, Anaikuttam, Sivakasi, TN, India. .*Corresponding author: Babin D Reejo. E-mail id: [email protected] ABSTRACT Ebola virus disease (EVD) is caused by infection with Ebola virus. Ebola virus disease first appeared in 1976 in 2 simultaneous outbreaks, one in Nzara, Sudan, and the other in Yambuku, Democratic Republic of Congo. The latter occurred in a village near the Ebola River, from which the disease takes its name. Fruit bats are considered possible natural hosts for Ebola virus. Ebola virus enters the patient through mucous membranes, breaks in the skin, or parenterally. EVD is often characterized by the sudden onset of fever, intense weakness, muscle pain, headache and sore throat. No FDA-approved vaccine or medicine is available for Ebola. Several vaccines are being developed and the two most advanced vaccines identified based on recombinant vesicular stomatitis virus expressing an Ebola virus protein (VSV-EBOV) and recombinant chimpanzee adenovirus expressing an Ebola virus protein (ChAd-EBOV) – are currently being tested in humans for safety and efficacy and trials were started.
    [Show full text]
  • Canine KIM-1 / TIM1 / HAVCR1 Protein (His Tag)
    Canine KIM-1 / TIM1 / HAVCR1 Protein (His Tag) Catalog Number: 70001-D07H General Information SDS-PAGE: Gene Name Synonym: HAVCR1 Protein Construction: A DNA sequence encoding the extracellular domain of canine HAVCR1 (XP_854888.1) (Tyr 21-Ser 160) was expressed with a polyhistidine tag at the N-terminus. Source: Canine Expression Host: HEK293 Cells QC Testing Purity: > 96 % as determined by SDS-PAGE Endotoxin: Protein Description < 1.0 EU per μg of the protein as determined by the LAL method HAV cellular receptor 1 (HAVCR1), also known as Kidney injury molecule 1 (KIM-1) and T cell immunoglobulinmucin 1 (TIM-1), is a type â… integral Stability: membrane glycoprotein. KIM-1 protein is widely expressed with highest levels in kidney and testis. It has been shown to play a major role as a Samples are stable for up to twelve months from date of receipt at -70 ℃ human susceptibility gene for asthma, allergy and autoimmunity. IgA1lambda is a specific ligand of KIM-1 protein and that their association Predicted N terminal: His has a synergistic effect in virus-receptor interactions. KIM-1 involves in the Molecular Mass: pathogenesis of acute kidney injury. It had been confirmed that KIM-1 is a human urinary renal dysfunction biomarker. Moreover, KIM-1 protein is a The recombinant canine HAVCR1 consists of 156 amino acids and has a novel regulatory molecule of flow-induced calcium signaling. calculated molecular mass of 17.6 kDa. In SDS-PAGE under reducing conditions, the apparent molecular mass of the protein is approximately References 35-40 kDa due to glycosylation.
    [Show full text]